mRNA_P-littoralis_Contig673.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.24.1
Unique NamemRNA_P-littoralis_Contig673.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig673.24.1 vs. uniprot
Match: A0A6H5KXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.890e-46
Identity = 105/263 (39.92%), Postives = 145/263 (55.13%), Query Frame = 2
Query: 1505 IDNLAESLEAEGKMSPEIKDLQELGFFKMRCMSFWYVCMLEELALMPERDFHMLFLKAVDGSEDPTWDDKRKINVGQKDDFLFELVCGPIKKMLELLALAGRKEVGVCALLKSLERSLLKAILQGHHADMCPSFDWESDFGLSCITAGSKPAQLDIYVGSFDGGMGSKGTP-------------------VRVDLLPGETIVLNGLARHRGVSYSSLNL*FVVSFVVKAAVKRAEKDQKEAETNELEKEQSPEEVGIPFEKWK 2236
            ++ L ++ E  GK SPE++ L +  FF  + +  WYVC+LE+L+LMP+R+F +LF KA++  EDP++DD RK++V  +DD L  L+CGP+KK++E +   G +EV                       DM   +DW  D G S I  G K   +D+Y  SFDG  GSK  P                   VR+ L PGE +   G+ RHRGVSY    L F +S+VVK A  +AEK+ + A TN LE E  PE   IPFE+WK
Sbjct:  121 VEQLKQNAERAGKSSPEMEHLAQYSFFVKKAVDPWYVCVLEKLSLMPQREFKLLFKKALEDEEDPSYDDYRKMSVILEDDILHGLICGPMKKVMEEIGSEGGREV-----------------------DMNNLYDWGEDVGFSLIPVGPKGGAVDLYPESFDGWEGSKKIPSWYIQKPWGIFKWLWKPYPVRITLEPGEMVCFTGVTRHRGVSYPFQCLRFFMSWVVKDAAVKAEKEGEGASTNNLELEGFPETRAIPFEQWK 360          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXG7_9PHAE2.890e-4639.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:62370..68453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2964
Hectar predicted targeting categoryother localisation
Exons8
Cds size1215
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.24.1prot_P-littoralis_Contig673.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 66241..67596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.4332368-UTR-P-littoralis_Contig673:62369..624921680791402.4332368-UTR-P-littoralis_Contig673:62369..62492Pylaiella littoralis U1_48UTRP-littoralis_Contig673 62370..62492 +
1680791402.4469938-UTR-P-littoralis_Contig673:63185..632531680791402.4469938-UTR-P-littoralis_Contig673:63185..63253Pylaiella littoralis U1_48UTRP-littoralis_Contig673 63186..63253 +
1680791402.459373-UTR-P-littoralis_Contig673:64090..641951680791402.459373-UTR-P-littoralis_Contig673:64090..64195Pylaiella littoralis U1_48UTRP-littoralis_Contig673 64091..64195 +
1680791402.480148-UTR-P-littoralis_Contig673:65012..650901680791402.480148-UTR-P-littoralis_Contig673:65012..65090Pylaiella littoralis U1_48UTRP-littoralis_Contig673 65013..65090 +
1680791402.4919207-UTR-P-littoralis_Contig673:65268..654241680791402.4919207-UTR-P-littoralis_Contig673:65268..65424Pylaiella littoralis U1_48UTRP-littoralis_Contig673 65269..65424 +
1680791402.5086987-UTR-P-littoralis_Contig673:65740..658481680791402.5086987-UTR-P-littoralis_Contig673:65740..65848Pylaiella littoralis U1_48UTRP-littoralis_Contig673 65741..65848 +
1680791402.5238316-UTR-P-littoralis_Contig673:65986..662401680791402.5238316-UTR-P-littoralis_Contig673:65986..66240Pylaiella littoralis U1_48UTRP-littoralis_Contig673 65987..66240 +
1680791402.5755806-UTR-P-littoralis_Contig673:67596..684531680791402.5755806-UTR-P-littoralis_Contig673:67596..68453Pylaiella littoralis U1_48UTRP-littoralis_Contig673 67597..68453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.539246-CDS-P-littoralis_Contig673:66240..668311680791402.539246-CDS-P-littoralis_Contig673:66240..66831Pylaiella littoralis U1_48CDSP-littoralis_Contig673 66241..66831 +
1680791402.5579588-CDS-P-littoralis_Contig673:66972..675961680791402.5579588-CDS-P-littoralis_Contig673:66972..67596Pylaiella littoralis U1_48CDSP-littoralis_Contig673 66973..67596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.24.1

>prot_P-littoralis_Contig673.24.1 ID=prot_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=405bp
MVKRAMNGGAGLLVSDLFQEDRLAHAPKWMQGMYDRVPDNLTLSSRVFTT
PRFLNVAEDVEGGGEGVEGGDSEQPSCEDPGEVEMRETGDRYAELVTVLE
MCTDAKSVVGQVQDLFGRRKSVRLATPPQGTESYLTCAVKYDEKLVWKTL
SMVLDRRISLGYRKDLEERLRTQQKPLRSRGEERRSGHEEQDEETPLVFS
AKPHIDNLAESLEAEGKMSPEIKDLQELGFFKMRCMSFWYVCMLEELALM
PERDFHMLFLKAVDGSEDPTWDDKRKINVGQKDDFLFELVCGPIKKMLEL
LALAGRKEVGVCALLKSLERSLLKAILQGHHADMCPSFDWESDFGLSCIT
AGSKPAQLDIYVGSFDGGMGSKGTPVRVDLLPGETIVLNGLARHRGVSYS
SLNL*
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mRNA from alignment at P-littoralis_Contig673:62370..68453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.24.1 ID=mRNA_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6084bp|location=Sequence derived from alignment at P-littoralis_Contig673:62370..68453+ (Pylaiella littoralis U1_48)
CCCCCCGTAGCTAGAGCACCCACAGCAGGACACCCCCCCCCCCTTGACCT CCGCCAGCTCAGGTTCAGCACCCCTGCACATGACCACCGCGCGAATGCTG TGTGGAGAGAAACACAAAGCGAAGTGATGTTTCGCACGTGTCTATCGTGA TGTTTGTTCTACTTTGTTTGCTGCCGCGTCTTGCCGTGCACAGACTCTGG GCGGTGGGGCGTATTGTTCACAAGTTAGGTGGTTGGCGGGCGCTTTCTGT CCTCACCTGTTCCCTTCAGTACCCGGAGGCTTCCACAAGCCTTTTCGGTC GGGACTTACCACGCGCCTCTCTCTGTACTCTCACTTCGGGTTTTCTCCTC GCTAAATAGATAACAAGAACACGGTTTTTCTTTGGCGGTAAAATACAGAA CAAGCAGATAGTGTGCGTGTGTGTGACAGAAACACTACTACGGCGTACCA GTTAACGTCAAGCTTCATGATATTCTTTCGTCTTCATATCTCTTTCCTTC CCATTTATCTCTTCTCCTCAATTTGCAGCACCTCCGCAACCAAGGCTGCC CCTACCGTGCAAATGCTCCAACAATCCTGAGCCTGTTTGACACCGTTTGC GGTCTTGACGAGTGAAGAGTGGGGGTGGCGGAGAGTGAGAGAGGTGGTTG AGTGCTGCCGTACTGTCATGTCCAATGATCCTGTGGGATATTCCACCAGT CGGGACGCAAACCTCCAACCAAGTACCACGTGCCAGTTTACGTGAAGCAA CGTGAAGCTCATGATAATCGCTCCCCCGCCCCCCCTCTCTCACCTTGAAC TAACCCCGTAACCAAGGCTCTCCCTGCATTGCAAATGCTCCAGCAATCCT GAGCCTGTGGGACACCCTGTGTGATATTTACGAGGTAAGAGTGGGGACCA TGAGCAAAGAGTGGGAGTGGCAGAAGTTGCGAGAGGCGGTGAGAGGTGCC GTGTTATCATGTCATTTGGTTGTGTGGAACCTTCATCCACCAAGCTCAAC TTACCGGTTATTGAACCAACGTGAAGCTCCATGATAACCCCCCCCCCCCA TTCTCTTTGCTCCCAGCCTATCTCTCTTTCTCTAACCCGAGTAAACACAG AGCCGACCCAACAACCTTCGTGACAAAAGGAACAGCACACACACCTTGCA CGCGCTACAAACCTCCTCTTCGATGTTTATCTCTGTCTCTCTTACGTTGA CGCAACTGCGTAATTAATACCTTCTCTACGGTGCGAATGCTCCAACGATC CTGAGCGAGTGTGACACCCTTTGTGTTATCCACGAGTTGATAGTTGGAGT GGCGTTGTAGTGGAGGAACCTGATTGGTAAATGTCCCATGAATTCTATTG GCACTTTCCTGGAGAAAACAAGCACTTTTGCGCCCCCCGGCACCAGTCAC ATACAGCAAGCCCGCACCAAAAGAGAAGGCAGCCTGACCTACACACGTAC GTATGCGTTAGGGTTATACATCACAAACGCTGTAGCCCGAGGTTCAGGTC GTGTTGTCTTCTTTCGCCGAAACTTGGGATGCGCGAAGAAGAGTATCAGA CGACAGCGGTGCTTTTTACCTAAATGCCTTACACATCGTTTCGCCCCCCC TCTGCTTCTCGTGTGCGAGTACATATAGTATGCTCCCTCCTTTCTCTCCA TCTCTCTTGAGTGCGCCCTCTCTCTCTACCCCTTGTCTTTCGCGCTCTCT CTTCCTCTCTCTCTTAACCAGCCCAATTTCCGTTTCTCACCCCTCCCTCT GTGACTCTTTCTGGGCGCCGAGAGAAGCGAGGACGCTGAGAAGCGAGGAC GCTGAAAGCAGCGAGGACAGAGTTCGGTAAAAGCTAGAAGTTTGAACTCG TTTTACTGAGGAGCATTTTTCACAGACCTGTGACTATATTTCCGCTGCGT TTCTCGTCTGCTTCTGAGACAAATGTACCCTCTCGTCAAGCCTCACCGAG GCTTACGCGGCAGGTTGCACGCTTCTCACCGAAAGGAAAGTATACTAGAG TATGCCGTGTCAGAAAAAAAGGATCAGCCTCTGGCAAGGTCTGCGAGAGG AGCTGTGCAAAATTTGTCAGCGCGTTTTTCCGTTGGACTTTTGGTCGTTT TGCCCCCTGCAAAAAATGTCGCCGATGAAAACCAGCTTTGCATCAAAAGC TCGAATCCTTGGTGTTGTGTTTTGCCAGCCCCGAAGAATGACTCAGATTC ACACGCATTTTGAGGCAGGTAATCGAACGTCTCGATTTGGCGCGACATTT TTGAAGCGACGTTCACATGGTAAACAGTTGATGGTTTGTGAACTGCTTTT GAGGAAAGTTTCCACTTGAGGCTCCGCCCTAGATTGAAATCGAAAAAAAA TTCTGTTTGGAAAAGAGGAAATGTTTTCGACTGGCCTAAAAGTTTGGCCC ATCCCAGAAAATGACGAAATTTGATTCGCATTGTGGGCTTTAGGTGATCG AACTGGTGGGGAAAGTTGTGTAGAAACCAACCGGACGCCTCCAGGATCCA TGGGTAAAGTGGTCAGCAAAGTCATGTGAGGTTGTGGTTTTTGGATTTTG GGAAGGAAACCAAGGGAGGAACTGTCTTCATTGTAGACTCTTGATGCATA CCCTATTCACCCCAATGTTTCTGCTGACCACCGTGCACGCAAGGCACACC CGAGGCGGCGTATCACCATGCAAGATGCGCCCATGGCAGTGCCACCCATG GAAGATGCACCACAACAACAGGTATGGTTACAGTTTCACGTGGAAATTTT AAAGTGTGAAAAAGCACACGCACATGCCTTGATTCACGGCGAAAATGTGT CTGGGGTTTGGATTGTGCGACTTTTACGTTCAAGTTAATCTGTTCTCCTT CAATGACGGACCCATCATTCCTCGCCGCCTCACGTGCTTCTTGTGCCAGG GCCGTCTATCCAAACGCCAAAAAACAAGACGGAGGACCAACGCCTCGAAG AGAGGACGGAAGTTGGGCCTTTCTCCACCGACACCGCTCGTCAAATCGGT CGTCAGGCTGTACTTCTTCGGCGGATACGCCCTCTCCGCATGGTCAATCC TGCAGGTGTGTGTTTTCTCGCAACATCTCTAGTAAGCAGTGCTCACGTAT AATAAGGTCCAAAACTTGTCCGATCTCTGTCGGCTGGTTTAGCGGCCTCG CGAATGCCACACAACTCCAAGAGCCGGCGGTGTCGAACACTACCACAACC CCAACAACGCGCATCCACCTCCACCGCTGCTGACCATATAATACCCTGTT ACGTTGCCAGAGCCAACGTGAATATGTTCGTGACGATATCGCCGCCAAAT TATTCCATCCACGCTCCTCTCAGTACGTTACCTCCCCCCTAAACCGCCCC CTCGTTTTGAACTTTGCGCAGATACCGGACTATATCCTCGTGGTCGAGAA TCGGCGCAGTATCTCTAACAAGCAAAACAGGAGGGCTCGGCGCCGATTCA CGGACGCAGCCGAGAAGCGGGGAGCCACGGTAAGCTCGAGTTCAATGTCT GCTTAGGGTTCAATGCCGTTTGATTCGTTGATTTGTTTGTATATTTATCA AAGGTCTGTTGACTTAAAGTGTTTTCTCCCCCGTTCCTCCGATTTCGTTC GAAAAACATCACAAAAGTGCCCGCTGCACGAAAATAGAGTCTTCGAAGTC GGAGAAGTGGTGCGCCATCTTGCCGAAGCGACCCCTCACGAAGAGAAGTT GAGAGATCTGGTAGAAGCGGCGCTACGAGAGCTGAAGTACGCTGTAACAC AGGGTATCAATAGAAACTCGTTTCACAAGGAGGGTCTCTGTATAATACTC AAGCTGGTGTTTTTTTTTCTCACCTGGAGTTGGAATTGCCCGAGGCAGAG CGAATCCCGCACTGGGATAAGATGGTGAAGCGTGCGATGAATGGTGGTGC TGGACTACTTGTGAGTGATCTCTTTCAAGAGGATCGTCTAGCGCATGCCC CAAAGTGGATGCAAGGCATGTATGACCGTGTCCCGGACAACCTCACGTTG AGCTCCCGCGTGTTCACGACTCCACGTTTTTTGAACGTAGCCGAGGACGT TGAGGGCGGAGGGGAGGGTGTTGAGGGCGGAGATTCCGAGCAACCTAGTT GTGAGGACCCGGGTGAAGTAGAGATGAGGGAAACAGGTGACAGATATGCA GAGTTGGTCACTGTATTGGAGATGTGCACAGATGCCAAGTCCGTGGTGGG GCAGGTACAAGATCTCTTCGGCAGACGAAAGAGTGTAAGGTTGGCCACTC CTCCACAAGGCACTGAATCATATCTCACGTGTGCGGTTAAGTACGACGAA AAGTTGGTGTGGAAGACTCTCTCTATGGTCCTCGATAGAAGGATCAGCCT CGGCTACCGGAAGGACTTGGAGGAACGCTTGCGTACCCAGCAAAAGCCAC TTAGGTCGAGGGGTGAGGAGCGGAGGTCGGGCCACGAGGAGCAAGACGAG GAGACACCGTTGGTGAGTGACGTGGGAAGAGACGCTGAGTGAGGCACTGT TGTAGCATTACACTTGGGTGAAGCCCTAATAGTAGTTGTGTTTCTGTGTC TGCCTTGACCAAGCCTCACATCGACGCTGTTTGTTTTCTCTGGTTTTCTG CAGGTCTTCTCGGCCAAGCCTCACATCGACAACTTGGCGGAGAGCTTGGA GGCGGAGGGGAAGATGTCACCAGAGATTAAGGACCTGCAGGAGCTTGGTT TTTTTAAGATGAGGTGCATGTCGTTTTGGTACGTGTGTATGCTCGAGGAG CTCGCGCTCATGCCCGAAAGAGATTTCCACATGCTTTTTCTGAAGGCCGT GGACGGGTCCGAGGACCCTACGTGGGATGATAAGCGTAAAATCAATGTGG GGCAGAAGGATGACTTTCTGTTTGAGCTGGTCTGCGGTCCCATCAAGAAA ATGTTGGAACTACTGGCCTTGGCAGGTAGAAAAGAAGTCGGTGTGTGTGC CTTGCTAAAGTCTCTAGAACGGTCGCTACTCAAAGCCATCCTCCAGGGGC ACCATGCGGACATGTGTCCTTCGTTCGATTGGGAGAGCGATTTCGGTTTG TCGTGCATTACCGCAGGCTCAAAGCCTGCCCAACTCGATATTTATGTCGG GTCTTTTGACGGTGGGATGGGGAGCAAGGGAACACCTGTGAGAGTAGACC TATTGCCGGGTGAGACTATTGTTCTCAATGGTCTTGCGAGGCACAGGGGT GTGTCTTACTCCAGCCTGAACCTTTGATTTGTCGTGTCTTTCGTGGTGAA GGCAGCTGTTAAGCGTGCAGAGAAGGACCAGAAAGAAGCCGAAACAAACG AGCTAGAGAAAGAACAGTCCCCAGAGGAGGTTGGGATTCCTTTCGAAAAG TGGAAGACGAAGTAGGTATAGGCGAAGATGGTTTGTCTGTTTTGCGTTGT CGGTATTCGGCGTGTCAGGAGGGTTGGTTATTCTTCGTGGTGTGCTGTTT TTTTTGTGCTTTTTCATCACGGGATCCTTTGGGTGGTAGTGACCCTTTTC ACGTACTCCACACACCGGGTTTGTTGCTCCTGTTGTGGATGCATCAAACA TGTTGAATTGACCTGCAGTGGTCTCCAACAAGTGCTCGCGCCGAACTAGC GTGTTGCTTCTGTTATGACGTATCACCTGGTTTAACTCAGCGTGCCTTGG TCTCACGCAGTTGCTCAACCCCATGAGTACAAATTCCAAACCATTGCAGG GCTTTCGGTAGTGGCCCTCTTCACGTGCTCCACATACCGGGTTGTTGCTA TCTGTTGTGTTTGCATCAAGCCTGTTGGATTAAGCTGCAGTGGTCTCTAG CAAGTGCTCGCGCCGACCTGGCGTGTTGCTTCTGTTATGACGTATCACCT GGTTCAATTCAGCGTTGGCTTGGTCTCACGCACTTGCTCACCCCCTTCAC AAACCAGTCAAGTACGCACGCCCAAATCCACGACCTCCACCCCCCGCCGG ACACAACCATAGCCTCGTCGACGAGGGCTTCAAAATCGCGCCCAGCCCTT CCCTCAAAAATGCAAAAGCTTTTTTCTGGGTTCATTTTAGCTCGAAAAGT AATGGACCTAGCCGAGTCACAACCTGTACCGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:62370..68453+

>mRNA_P-littoralis_Contig673.24.1 ID=mRNA_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1215bp|location=Sequence derived from alignment at P-littoralis_Contig673:62370..68453+ (Pylaiella littoralis U1_48)
ATGGTGAAGCGTGCGATGAATGGTGGTGCTGGACTACTTGTGAGTGATCT
CTTTCAAGAGGATCGTCTAGCGCATGCCCCAAAGTGGATGCAAGGCATGT
ATGACCGTGTCCCGGACAACCTCACGTTGAGCTCCCGCGTGTTCACGACT
CCACGTTTTTTGAACGTAGCCGAGGACGTTGAGGGCGGAGGGGAGGGTGT
TGAGGGCGGAGATTCCGAGCAACCTAGTTGTGAGGACCCGGGTGAAGTAG
AGATGAGGGAAACAGGTGACAGATATGCAGAGTTGGTCACTGTATTGGAG
ATGTGCACAGATGCCAAGTCCGTGGTGGGGCAGGTACAAGATCTCTTCGG
CAGACGAAAGAGTGTAAGGTTGGCCACTCCTCCACAAGGCACTGAATCAT
ATCTCACGTGTGCGGTTAAGTACGACGAAAAGTTGGTGTGGAAGACTCTC
TCTATGGTCCTCGATAGAAGGATCAGCCTCGGCTACCGGAAGGACTTGGA
GGAACGCTTGCGTACCCAGCAAAAGCCACTTAGGTCGAGGGGTGAGGAGC
GGAGGTCGGGCCACGAGGAGCAAGACGAGGAGACACCGTTGGTCTTCTCG
GCCAAGCCTCACATCGACAACTTGGCGGAGAGCTTGGAGGCGGAGGGGAA
GATGTCACCAGAGATTAAGGACCTGCAGGAGCTTGGTTTTTTTAAGATGA
GGTGCATGTCGTTTTGGTACGTGTGTATGCTCGAGGAGCTCGCGCTCATG
CCCGAAAGAGATTTCCACATGCTTTTTCTGAAGGCCGTGGACGGGTCCGA
GGACCCTACGTGGGATGATAAGCGTAAAATCAATGTGGGGCAGAAGGATG
ACTTTCTGTTTGAGCTGGTCTGCGGTCCCATCAAGAAAATGTTGGAACTA
CTGGCCTTGGCAGGTAGAAAAGAAGTCGGTGTGTGTGCCTTGCTAAAGTC
TCTAGAACGGTCGCTACTCAAAGCCATCCTCCAGGGGCACCATGCGGACA
TGTGTCCTTCGTTCGATTGGGAGAGCGATTTCGGTTTGTCGTGCATTACC
GCAGGCTCAAAGCCTGCCCAACTCGATATTTATGTCGGGTCTTTTGACGG
TGGGATGGGGAGCAAGGGAACACCTGTGAGAGTAGACCTATTGCCGGGTG
AGACTATTGTTCTCAATGGTCTTGCGAGGCACAGGGGTGTGTCTTACTCC
AGCCTGAACCTTTGA
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