|
|
Homology
BLAST of mRNA_P-littoralis_Contig673.24.1 vs. uniprot
Match: A0A6H5KXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG7_9PHAE) HSP 1 Score: 180 bits (457), Expect = 2.890e-46 Identity = 105/263 (39.92%), Postives = 145/263 (55.13%), Query Frame = 2
Query: 1505 IDNLAESLEAEGKMSPEIKDLQELGFFKMRCMSFWYVCMLEELALMPERDFHMLFLKAVDGSEDPTWDDKRKINVGQKDDFLFELVCGPIKKMLELLALAGRKEVGVCALLKSLERSLLKAILQGHHADMCPSFDWESDFGLSCITAGSKPAQLDIYVGSFDGGMGSKGTP-------------------VRVDLLPGETIVLNGLARHRGVSYSSLNL*FVVSFVVKAAVKRAEKDQKEAETNELEKEQSPEEVGIPFEKWK 2236
++ L ++ E GK SPE++ L + FF + + WYVC+LE+L+LMP+R+F +LF KA++ EDP++DD RK++V +DD L L+CGP+KK++E + G +EV DM +DW D G S I G K +D+Y SFDG GSK P VR+ L PGE + G+ RHRGVSY L F +S+VVK A +AEK+ + A TN LE E PE IPFE+WK
Sbjct: 121 VEQLKQNAERAGKSSPEMEHLAQYSFFVKKAVDPWYVCVLEKLSLMPQREFKLLFKKALEDEEDPSYDDYRKMSVILEDDILHGLICGPMKKVMEEIGSEGGREV-----------------------DMNNLYDWGEDVGFSLIPVGPKGGAVDLYPESFDGWEGSKKIPSWYIQKPWGIFKWLWKPYPVRITLEPGEMVCFTGVTRHRGVSYPFQCLRFFMSWVVKDAAVKAEKEGEGASTNNLELEGFPETRAIPFEQWK 360
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2964 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Cds size | 1215 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791402.4332368-UTR-P-littoralis_Contig673:62369..62492 | 1680791402.4332368-UTR-P-littoralis_Contig673:62369..62492 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 62370..62492 + |
| 1680791402.4469938-UTR-P-littoralis_Contig673:63185..63253 | 1680791402.4469938-UTR-P-littoralis_Contig673:63185..63253 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 63186..63253 + |
| 1680791402.459373-UTR-P-littoralis_Contig673:64090..64195 | 1680791402.459373-UTR-P-littoralis_Contig673:64090..64195 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 64091..64195 + |
| 1680791402.480148-UTR-P-littoralis_Contig673:65012..65090 | 1680791402.480148-UTR-P-littoralis_Contig673:65012..65090 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 65013..65090 + |
| 1680791402.4919207-UTR-P-littoralis_Contig673:65268..65424 | 1680791402.4919207-UTR-P-littoralis_Contig673:65268..65424 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 65269..65424 + |
| 1680791402.5086987-UTR-P-littoralis_Contig673:65740..65848 | 1680791402.5086987-UTR-P-littoralis_Contig673:65740..65848 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 65741..65848 + |
| 1680791402.5238316-UTR-P-littoralis_Contig673:65986..66240 | 1680791402.5238316-UTR-P-littoralis_Contig673:65986..66240 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 65987..66240 + |
| 1680791402.5755806-UTR-P-littoralis_Contig673:67596..68453 | 1680791402.5755806-UTR-P-littoralis_Contig673:67596..68453 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig673 67597..68453 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791402.539246-CDS-P-littoralis_Contig673:66240..66831 | 1680791402.539246-CDS-P-littoralis_Contig673:66240..66831 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig673 66241..66831 + |
| 1680791402.5579588-CDS-P-littoralis_Contig673:66972..67596 | 1680791402.5579588-CDS-P-littoralis_Contig673:66972..67596 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig673 66973..67596 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig673.24.1 >prot_P-littoralis_Contig673.24.1 ID=prot_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=405bp
MVKRAMNGGAGLLVSDLFQEDRLAHAPKWMQGMYDRVPDNLTLSSRVFTT PRFLNVAEDVEGGGEGVEGGDSEQPSCEDPGEVEMRETGDRYAELVTVLE MCTDAKSVVGQVQDLFGRRKSVRLATPPQGTESYLTCAVKYDEKLVWKTL SMVLDRRISLGYRKDLEERLRTQQKPLRSRGEERRSGHEEQDEETPLVFS AKPHIDNLAESLEAEGKMSPEIKDLQELGFFKMRCMSFWYVCMLEELALM PERDFHMLFLKAVDGSEDPTWDDKRKINVGQKDDFLFELVCGPIKKMLEL LALAGRKEVGVCALLKSLERSLLKAILQGHHADMCPSFDWESDFGLSCIT AGSKPAQLDIYVGSFDGGMGSKGTPVRVDLLPGETIVLNGLARHRGVSYS SLNL* back to topmRNA from alignment at P-littoralis_Contig673:62370..68453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig673.24.1 ID=mRNA_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6084bp|location=Sequence derived from alignment at P-littoralis_Contig673:62370..68453+ (Pylaiella littoralis U1_48) CCCCCCGTAGCTAGAGCACCCACAGCAGGACACCCCCCCCCCCTTGACCT
CCGCCAGCTCAGGTTCAGCACCCCTGCACATGACCACCGCGCGAATGCTG
TGTGGAGAGAAACACAAAGCGAAGTGATGTTTCGCACGTGTCTATCGTGA
TGTTTGTTCTACTTTGTTTGCTGCCGCGTCTTGCCGTGCACAGACTCTGG
GCGGTGGGGCGTATTGTTCACAAGTTAGGTGGTTGGCGGGCGCTTTCTGT
CCTCACCTGTTCCCTTCAGTACCCGGAGGCTTCCACAAGCCTTTTCGGTC
GGGACTTACCACGCGCCTCTCTCTGTACTCTCACTTCGGGTTTTCTCCTC
GCTAAATAGATAACAAGAACACGGTTTTTCTTTGGCGGTAAAATACAGAA
CAAGCAGATAGTGTGCGTGTGTGTGACAGAAACACTACTACGGCGTACCA
GTTAACGTCAAGCTTCATGATATTCTTTCGTCTTCATATCTCTTTCCTTC
CCATTTATCTCTTCTCCTCAATTTGCAGCACCTCCGCAACCAAGGCTGCC
CCTACCGTGCAAATGCTCCAACAATCCTGAGCCTGTTTGACACCGTTTGC
GGTCTTGACGAGTGAAGAGTGGGGGTGGCGGAGAGTGAGAGAGGTGGTTG
AGTGCTGCCGTACTGTCATGTCCAATGATCCTGTGGGATATTCCACCAGT
CGGGACGCAAACCTCCAACCAAGTACCACGTGCCAGTTTACGTGAAGCAA
CGTGAAGCTCATGATAATCGCTCCCCCGCCCCCCCTCTCTCACCTTGAAC
TAACCCCGTAACCAAGGCTCTCCCTGCATTGCAAATGCTCCAGCAATCCT
GAGCCTGTGGGACACCCTGTGTGATATTTACGAGGTAAGAGTGGGGACCA
TGAGCAAAGAGTGGGAGTGGCAGAAGTTGCGAGAGGCGGTGAGAGGTGCC
GTGTTATCATGTCATTTGGTTGTGTGGAACCTTCATCCACCAAGCTCAAC
TTACCGGTTATTGAACCAACGTGAAGCTCCATGATAACCCCCCCCCCCCA
TTCTCTTTGCTCCCAGCCTATCTCTCTTTCTCTAACCCGAGTAAACACAG
AGCCGACCCAACAACCTTCGTGACAAAAGGAACAGCACACACACCTTGCA
CGCGCTACAAACCTCCTCTTCGATGTTTATCTCTGTCTCTCTTACGTTGA
CGCAACTGCGTAATTAATACCTTCTCTACGGTGCGAATGCTCCAACGATC
CTGAGCGAGTGTGACACCCTTTGTGTTATCCACGAGTTGATAGTTGGAGT
GGCGTTGTAGTGGAGGAACCTGATTGGTAAATGTCCCATGAATTCTATTG
GCACTTTCCTGGAGAAAACAAGCACTTTTGCGCCCCCCGGCACCAGTCAC
ATACAGCAAGCCCGCACCAAAAGAGAAGGCAGCCTGACCTACACACGTAC
GTATGCGTTAGGGTTATACATCACAAACGCTGTAGCCCGAGGTTCAGGTC
GTGTTGTCTTCTTTCGCCGAAACTTGGGATGCGCGAAGAAGAGTATCAGA
CGACAGCGGTGCTTTTTACCTAAATGCCTTACACATCGTTTCGCCCCCCC
TCTGCTTCTCGTGTGCGAGTACATATAGTATGCTCCCTCCTTTCTCTCCA
TCTCTCTTGAGTGCGCCCTCTCTCTCTACCCCTTGTCTTTCGCGCTCTCT
CTTCCTCTCTCTCTTAACCAGCCCAATTTCCGTTTCTCACCCCTCCCTCT
GTGACTCTTTCTGGGCGCCGAGAGAAGCGAGGACGCTGAGAAGCGAGGAC
GCTGAAAGCAGCGAGGACAGAGTTCGGTAAAAGCTAGAAGTTTGAACTCG
TTTTACTGAGGAGCATTTTTCACAGACCTGTGACTATATTTCCGCTGCGT
TTCTCGTCTGCTTCTGAGACAAATGTACCCTCTCGTCAAGCCTCACCGAG
GCTTACGCGGCAGGTTGCACGCTTCTCACCGAAAGGAAAGTATACTAGAG
TATGCCGTGTCAGAAAAAAAGGATCAGCCTCTGGCAAGGTCTGCGAGAGG
AGCTGTGCAAAATTTGTCAGCGCGTTTTTCCGTTGGACTTTTGGTCGTTT
TGCCCCCTGCAAAAAATGTCGCCGATGAAAACCAGCTTTGCATCAAAAGC
TCGAATCCTTGGTGTTGTGTTTTGCCAGCCCCGAAGAATGACTCAGATTC
ACACGCATTTTGAGGCAGGTAATCGAACGTCTCGATTTGGCGCGACATTT
TTGAAGCGACGTTCACATGGTAAACAGTTGATGGTTTGTGAACTGCTTTT
GAGGAAAGTTTCCACTTGAGGCTCCGCCCTAGATTGAAATCGAAAAAAAA
TTCTGTTTGGAAAAGAGGAAATGTTTTCGACTGGCCTAAAAGTTTGGCCC
ATCCCAGAAAATGACGAAATTTGATTCGCATTGTGGGCTTTAGGTGATCG
AACTGGTGGGGAAAGTTGTGTAGAAACCAACCGGACGCCTCCAGGATCCA
TGGGTAAAGTGGTCAGCAAAGTCATGTGAGGTTGTGGTTTTTGGATTTTG
GGAAGGAAACCAAGGGAGGAACTGTCTTCATTGTAGACTCTTGATGCATA
CCCTATTCACCCCAATGTTTCTGCTGACCACCGTGCACGCAAGGCACACC
CGAGGCGGCGTATCACCATGCAAGATGCGCCCATGGCAGTGCCACCCATG
GAAGATGCACCACAACAACAGGTATGGTTACAGTTTCACGTGGAAATTTT
AAAGTGTGAAAAAGCACACGCACATGCCTTGATTCACGGCGAAAATGTGT
CTGGGGTTTGGATTGTGCGACTTTTACGTTCAAGTTAATCTGTTCTCCTT
CAATGACGGACCCATCATTCCTCGCCGCCTCACGTGCTTCTTGTGCCAGG
GCCGTCTATCCAAACGCCAAAAAACAAGACGGAGGACCAACGCCTCGAAG
AGAGGACGGAAGTTGGGCCTTTCTCCACCGACACCGCTCGTCAAATCGGT
CGTCAGGCTGTACTTCTTCGGCGGATACGCCCTCTCCGCATGGTCAATCC
TGCAGGTGTGTGTTTTCTCGCAACATCTCTAGTAAGCAGTGCTCACGTAT
AATAAGGTCCAAAACTTGTCCGATCTCTGTCGGCTGGTTTAGCGGCCTCG
CGAATGCCACACAACTCCAAGAGCCGGCGGTGTCGAACACTACCACAACC
CCAACAACGCGCATCCACCTCCACCGCTGCTGACCATATAATACCCTGTT
ACGTTGCCAGAGCCAACGTGAATATGTTCGTGACGATATCGCCGCCAAAT
TATTCCATCCACGCTCCTCTCAGTACGTTACCTCCCCCCTAAACCGCCCC
CTCGTTTTGAACTTTGCGCAGATACCGGACTATATCCTCGTGGTCGAGAA
TCGGCGCAGTATCTCTAACAAGCAAAACAGGAGGGCTCGGCGCCGATTCA
CGGACGCAGCCGAGAAGCGGGGAGCCACGGTAAGCTCGAGTTCAATGTCT
GCTTAGGGTTCAATGCCGTTTGATTCGTTGATTTGTTTGTATATTTATCA
AAGGTCTGTTGACTTAAAGTGTTTTCTCCCCCGTTCCTCCGATTTCGTTC
GAAAAACATCACAAAAGTGCCCGCTGCACGAAAATAGAGTCTTCGAAGTC
GGAGAAGTGGTGCGCCATCTTGCCGAAGCGACCCCTCACGAAGAGAAGTT
GAGAGATCTGGTAGAAGCGGCGCTACGAGAGCTGAAGTACGCTGTAACAC
AGGGTATCAATAGAAACTCGTTTCACAAGGAGGGTCTCTGTATAATACTC
AAGCTGGTGTTTTTTTTTCTCACCTGGAGTTGGAATTGCCCGAGGCAGAG
CGAATCCCGCACTGGGATAAGATGGTGAAGCGTGCGATGAATGGTGGTGC
TGGACTACTTGTGAGTGATCTCTTTCAAGAGGATCGTCTAGCGCATGCCC
CAAAGTGGATGCAAGGCATGTATGACCGTGTCCCGGACAACCTCACGTTG
AGCTCCCGCGTGTTCACGACTCCACGTTTTTTGAACGTAGCCGAGGACGT
TGAGGGCGGAGGGGAGGGTGTTGAGGGCGGAGATTCCGAGCAACCTAGTT
GTGAGGACCCGGGTGAAGTAGAGATGAGGGAAACAGGTGACAGATATGCA
GAGTTGGTCACTGTATTGGAGATGTGCACAGATGCCAAGTCCGTGGTGGG
GCAGGTACAAGATCTCTTCGGCAGACGAAAGAGTGTAAGGTTGGCCACTC
CTCCACAAGGCACTGAATCATATCTCACGTGTGCGGTTAAGTACGACGAA
AAGTTGGTGTGGAAGACTCTCTCTATGGTCCTCGATAGAAGGATCAGCCT
CGGCTACCGGAAGGACTTGGAGGAACGCTTGCGTACCCAGCAAAAGCCAC
TTAGGTCGAGGGGTGAGGAGCGGAGGTCGGGCCACGAGGAGCAAGACGAG
GAGACACCGTTGGTGAGTGACGTGGGAAGAGACGCTGAGTGAGGCACTGT
TGTAGCATTACACTTGGGTGAAGCCCTAATAGTAGTTGTGTTTCTGTGTC
TGCCTTGACCAAGCCTCACATCGACGCTGTTTGTTTTCTCTGGTTTTCTG
CAGGTCTTCTCGGCCAAGCCTCACATCGACAACTTGGCGGAGAGCTTGGA
GGCGGAGGGGAAGATGTCACCAGAGATTAAGGACCTGCAGGAGCTTGGTT
TTTTTAAGATGAGGTGCATGTCGTTTTGGTACGTGTGTATGCTCGAGGAG
CTCGCGCTCATGCCCGAAAGAGATTTCCACATGCTTTTTCTGAAGGCCGT
GGACGGGTCCGAGGACCCTACGTGGGATGATAAGCGTAAAATCAATGTGG
GGCAGAAGGATGACTTTCTGTTTGAGCTGGTCTGCGGTCCCATCAAGAAA
ATGTTGGAACTACTGGCCTTGGCAGGTAGAAAAGAAGTCGGTGTGTGTGC
CTTGCTAAAGTCTCTAGAACGGTCGCTACTCAAAGCCATCCTCCAGGGGC
ACCATGCGGACATGTGTCCTTCGTTCGATTGGGAGAGCGATTTCGGTTTG
TCGTGCATTACCGCAGGCTCAAAGCCTGCCCAACTCGATATTTATGTCGG
GTCTTTTGACGGTGGGATGGGGAGCAAGGGAACACCTGTGAGAGTAGACC
TATTGCCGGGTGAGACTATTGTTCTCAATGGTCTTGCGAGGCACAGGGGT
GTGTCTTACTCCAGCCTGAACCTTTGATTTGTCGTGTCTTTCGTGGTGAA
GGCAGCTGTTAAGCGTGCAGAGAAGGACCAGAAAGAAGCCGAAACAAACG
AGCTAGAGAAAGAACAGTCCCCAGAGGAGGTTGGGATTCCTTTCGAAAAG
TGGAAGACGAAGTAGGTATAGGCGAAGATGGTTTGTCTGTTTTGCGTTGT
CGGTATTCGGCGTGTCAGGAGGGTTGGTTATTCTTCGTGGTGTGCTGTTT
TTTTTGTGCTTTTTCATCACGGGATCCTTTGGGTGGTAGTGACCCTTTTC
ACGTACTCCACACACCGGGTTTGTTGCTCCTGTTGTGGATGCATCAAACA
TGTTGAATTGACCTGCAGTGGTCTCCAACAAGTGCTCGCGCCGAACTAGC
GTGTTGCTTCTGTTATGACGTATCACCTGGTTTAACTCAGCGTGCCTTGG
TCTCACGCAGTTGCTCAACCCCATGAGTACAAATTCCAAACCATTGCAGG
GCTTTCGGTAGTGGCCCTCTTCACGTGCTCCACATACCGGGTTGTTGCTA
TCTGTTGTGTTTGCATCAAGCCTGTTGGATTAAGCTGCAGTGGTCTCTAG
CAAGTGCTCGCGCCGACCTGGCGTGTTGCTTCTGTTATGACGTATCACCT
GGTTCAATTCAGCGTTGGCTTGGTCTCACGCACTTGCTCACCCCCTTCAC
AAACCAGTCAAGTACGCACGCCCAAATCCACGACCTCCACCCCCCGCCGG
ACACAACCATAGCCTCGTCGACGAGGGCTTCAAAATCGCGCCCAGCCCTT
CCCTCAAAAATGCAAAAGCTTTTTTCTGGGTTCATTTTAGCTCGAAAAGT
AATGGACCTAGCCGAGTCACAACCTGTACCGCAC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig673:62370..68453+ >mRNA_P-littoralis_Contig673.24.1 ID=mRNA_P-littoralis_Contig673.24.1|Name=mRNA_P-littoralis_Contig673.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1215bp|location=Sequence derived from alignment at P-littoralis_Contig673:62370..68453+ (Pylaiella littoralis U1_48) ATGGTGAAGCGTGCGATGAATGGTGGTGCTGGACTACTTGTGAGTGATCT CTTTCAAGAGGATCGTCTAGCGCATGCCCCAAAGTGGATGCAAGGCATGT ATGACCGTGTCCCGGACAACCTCACGTTGAGCTCCCGCGTGTTCACGACT CCACGTTTTTTGAACGTAGCCGAGGACGTTGAGGGCGGAGGGGAGGGTGT TGAGGGCGGAGATTCCGAGCAACCTAGTTGTGAGGACCCGGGTGAAGTAG AGATGAGGGAAACAGGTGACAGATATGCAGAGTTGGTCACTGTATTGGAG ATGTGCACAGATGCCAAGTCCGTGGTGGGGCAGGTACAAGATCTCTTCGG CAGACGAAAGAGTGTAAGGTTGGCCACTCCTCCACAAGGCACTGAATCAT ATCTCACGTGTGCGGTTAAGTACGACGAAAAGTTGGTGTGGAAGACTCTC TCTATGGTCCTCGATAGAAGGATCAGCCTCGGCTACCGGAAGGACTTGGA GGAACGCTTGCGTACCCAGCAAAAGCCACTTAGGTCGAGGGGTGAGGAGC GGAGGTCGGGCCACGAGGAGCAAGACGAGGAGACACCGTTGGTCTTCTCG GCCAAGCCTCACATCGACAACTTGGCGGAGAGCTTGGAGGCGGAGGGGAA GATGTCACCAGAGATTAAGGACCTGCAGGAGCTTGGTTTTTTTAAGATGA GGTGCATGTCGTTTTGGTACGTGTGTATGCTCGAGGAGCTCGCGCTCATG CCCGAAAGAGATTTCCACATGCTTTTTCTGAAGGCCGTGGACGGGTCCGA GGACCCTACGTGGGATGATAAGCGTAAAATCAATGTGGGGCAGAAGGATG ACTTTCTGTTTGAGCTGGTCTGCGGTCCCATCAAGAAAATGTTGGAACTA CTGGCCTTGGCAGGTAGAAAAGAAGTCGGTGTGTGTGCCTTGCTAAAGTC TCTAGAACGGTCGCTACTCAAAGCCATCCTCCAGGGGCACCATGCGGACA TGTGTCCTTCGTTCGATTGGGAGAGCGATTTCGGTTTGTCGTGCATTACC GCAGGCTCAAAGCCTGCCCAACTCGATATTTATGTCGGGTCTTTTGACGG TGGGATGGGGAGCAAGGGAACACCTGTGAGAGTAGACCTATTGCCGGGTG AGACTATTGTTCTCAATGGTCTTGCGAGGCACAGGGGTGTGTCTTACTCC AGCCTGAACCTTTGA back to top
|