mRNA_P-littoralis_Contig673.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.14.1
Unique NamemRNA_P-littoralis_Contig673.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig673.14.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.070e-21
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  315 QNVAAKEEVLSMIHQDYPAATNNSVTAFLEKIEDSGVRSMASGVVAASSTILMASTKRLLVAQHRGICQKMHSNFVDLVVEFREKLRPDGSRG----TVSLFPTIYEY*D 632
            Q +A K++VL+MI +DYP+A N++VTA+L+ +ED+GV+S+ SGVVAA + +L+ASTKR      RG+CQK+HS+FVDLVVEFRE     G+ G     V LFP  +   D
Sbjct:  364 QQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKWWWSQRGVCQKIHSHFVDLVVEFREAFNV-GTEGETAAAVGLFPARFSMDD 472
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BLAST of mRNA_P-littoralis_Contig673.14.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.230e-20
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 3 
Query:  315 QNVAAKEEVLSMIHQDYPAATNNSVTAFLEKIEDSGVRSMASGVVAASSTILMASTKRLLVAQHRGICQKMHSNFVDLVVEFREKLRPDGSRG----TVSLFPTIYEY*D 632
            Q +A K +VL+MI +DYP+A NN+VTA+L+ +ED+GV+S+ SGVVAA   +L+AST+R      RG+CQK+HS+FVDLVVEFRE     G+ G     V LFP  +   D
Sbjct:  366 QQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKWWWSRRGVCQKIHSHFVDLVVEFREAFDV-GTEGETAAAVGLFPARFSMDD 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP62_9PHAE1.070e-2151.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFR0_ECTSI1.230e-2051.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:33350..35462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1116
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.3091993-UTR-P-littoralis_Contig673:33349..333961680791402.3091993-UTR-P-littoralis_Contig673:33349..33396Pylaiella littoralis U1_48UTRP-littoralis_Contig673 33350..33396 +
1680791402.3399272-UTR-P-littoralis_Contig673:34975..354621680791402.3399272-UTR-P-littoralis_Contig673:34975..35462Pylaiella littoralis U1_48UTRP-littoralis_Contig673 34976..35462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.3220325-CDS-P-littoralis_Contig673:33396..337621680791402.3220325-CDS-P-littoralis_Contig673:33396..33762Pylaiella littoralis U1_48CDSP-littoralis_Contig673 33397..33762 +
1680791402.3308053-CDS-P-littoralis_Contig673:34759..349751680791402.3308053-CDS-P-littoralis_Contig673:34759..34975Pylaiella littoralis U1_48CDSP-littoralis_Contig673 34760..34975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.14.1prot_P-littoralis_Contig673.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 33397..34975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.14.1

>prot_P-littoralis_Contig673.14.1 ID=prot_P-littoralis_Contig673.14.1|Name=mRNA_P-littoralis_Contig673.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MHFLWKNCRIAELQNFNQFTKFEFTEFLTQFQAHHGALLWFSEHGVEHAI
IETPGCTTQPRERKSVKQRMFACALVLIGHNSCAPCLCFQNVAAKEEVLS
MIHQDYPAATNNSVTAFLEKIEDSGVRSMASGVVAASSTILMASTKRLLV
AQHRGICQKMHSNFVDLVVEFREKLRPDGSRGTVSLFPTIYEY*
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mRNA from alignment at P-littoralis_Contig673:33350..35462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.14.1 ID=mRNA_P-littoralis_Contig673.14.1|Name=mRNA_P-littoralis_Contig673.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2113bp|location=Sequence derived from alignment at P-littoralis_Contig673:33350..35462+ (Pylaiella littoralis U1_48)
GGAGGATACACATATGCCTTCATTTTTCGTGAAACCTAATAGCACTGATG
CACTTTCTGTGGAAGAATTGCAGAATTGCAGAATTGCAAAATTTCAACCA
GTTTACGAAATTTGAGTTCACGGAATTCCTAACGCAGTTTCAGGCTCACC
ACGGCGCCTTGCTTTGGTTCTCAGAGCACGGAGTTGAGCATGCGATTATT
GAAACCCCCGGTTGTACAACGCAGCCCCGCGAACGAAAGAGCGTGAAGCA
ACGTATGTTTGCTTGTGCTTTGGTGCTGATAGGCCATAACTCCTGCGCAC
CCTGTCTGTGTTTCCAGAACGTCGCGGCCAAAGAAGAAGTGCTGAGCATG
ATCCACCAGGACTACCCAGCGGCGACCAACAACAGCGTAACCGCTTTCTT
GGAGAAGATTGAGGTACGGGGGTGAAAAGCTGTCCGTAAGGCACGGCTAA
CATTGTCTGTGTGGCTTTGGGTTGATGTGGATAATTCGTAATGGGGACAC
GGCTGATTTTTTTGCTACGATTTTGGCGGCGTCGGCTTGAGATCGTTGGC
GACCGACCCTTCAGGGCCGTGTGAAGTTTTCCTGGAACTTTGAAGCGCCG
ACGAGAGGGGAAACAGAGGTCGGCTTTCGAATACTCCGGAGTATTTGATT
ACTTCTGCGCGGGGTACGGGGTGAGATGGTTGTCAACCCCCCTGGCAATT
TTGATGCAAAGTGGTTCTCTTTTTTTTCAGGACCATCTTCTGAGCGCCGA
TGACCAGGACAGGCCTTGCTCTGGTCCGCAGGTCGACCTGTCATGGGCGT
CTTCCCCTCCCTCCACTTGCAAATGTTGACGCTTTCCGCGATGCGTCAGC
GGCAAAGACCTACCAAAGTTTATTGGGGTGATGACAGCGCCAGATGAGCC
GTGATGACAGCGCCAGATGAGCCGTAAAGTAGTCTTGGCAAGGGTTTTGG
AATGAACCAGCCTTGTTGCCCCCACCGACATCCATGTTGAATGAAGCTTT
CGGCGCGAATTCGCCGCAAGCGTCGGGATAGGGGAGCAGCGCCGCCGCTC
TCTTTATCTCTCAGCTATGAGAAAGACCAGTGGGTCGTGGTCGTTGAAAC
CCTCTAGGTGATTGTTGGCACCAAACTCGTATCGTTCCGGCTCGGCAGAA
ACGGGACGGTAAATGTCCATGTTGTGGCAAGATCCTACGAGCGCACGTTG
TCGAGTAGTACCCTGTTCCTCGTGTTCCTACATCTCTATCTCCTCCTACA
AAAAAGGTTGTACCCAAAATAAAACAAAATTATTTACATGTCCACACGCA
GCAACAAGTCCCAACAATGAGTGTGAATTTGACACCACGCCCGCACCTCC
TTTTCTTACGCATCAATTTTGCAACTCTTCCGGCTGCCTCGTCTGTCCCC
CGCTTTACAGGATTCTGGCGTCAGGTCGATGGCGAGCGGCGTCGTGGCTG
CCTCTTCCACCATTCTGATGGCCTCAACGAAGCGGCTCTTGGTGGCGCAG
CACAGGGGCATCTGCCAGAAAATGCACTCCAATTTTGTCGACCTCGTGGT
GGAGTTCAGAGAGAAGCTCAGACCGGATGGCAGTAGGGGCACGGTTAGTC
TGTTTCCCACCATATACGAGTACTGAGATGTGTCAACACGCTGCGGGCTC
TGTCGGAGACGCTTCTAGTTGCTGCACTCTTGTATTATATTGGGCCGCGC
GAGTGAAGCGAGCCTTTTTTCCCCTTCTCATCCCAGGAAGGGAAAAACTC
TTTTTAATATCGGGTCGCATAGGGTTCCCTCTTTTGATAAACGATCGGCT
TTGATGGCCCAACTTTGTGATCACAACGATATCTATAGAGCACCGATTCA
CGATCTGTTGGCTTCTGAGAGGGAAGAAAACAGGGAAATCCTCATCACGT
CGGTTTGGTTGCGCTCCGATAAGAGATGGCCGTGCTACAAGACCACACGT
CCAGAAATCAACCGGAGACCCCGAGCTAGGACGAAAAGCACCTGGGGTTT
CATTGAAAGAAGGGCCAAACGGAGATCGACAAACTACCGCCTTCGTGTCG
TCGAACGAGGTCATAGCTCTGTCCACACCACGCAACCAAAACAAAAACAC
CGGGTACTGCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:33350..35462+

>mRNA_P-littoralis_Contig673.14.1 ID=mRNA_P-littoralis_Contig673.14.1|Name=mRNA_P-littoralis_Contig673.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig673:33350..35462+ (Pylaiella littoralis U1_48)
ATGCACTTTCTGTGGAAGAATTGCAGAATTGCAGAATTGCAAAATTTCAA
CCAGTTTACGAAATTTGAGTTCACGGAATTCCTAACGCAGTTTCAGGCTC
ACCACGGCGCCTTGCTTTGGTTCTCAGAGCACGGAGTTGAGCATGCGATT
ATTGAAACCCCCGGTTGTACAACGCAGCCCCGCGAACGAAAGAGCGTGAA
GCAACGTATGTTTGCTTGTGCTTTGGTGCTGATAGGCCATAACTCCTGCG
CACCCTGTCTGTGTTTCCAGAACGTCGCGGCCAAAGAAGAAGTGCTGAGC
ATGATCCACCAGGACTACCCAGCGGCGACCAACAACAGCGTAACCGCTTT
CTTGGAGAAGATTGAGGATTCTGGCGTCAGGTCGATGGCGAGCGGCGTCG
TGGCTGCCTCTTCCACCATTCTGATGGCCTCAACGAAGCGGCTCTTGGTG
GCGCAGCACAGGGGCATCTGCCAGAAAATGCACTCCAATTTTGTCGACCT
CGTGGTGGAGTTCAGAGAGAAGCTCAGACCGGATGGCAGTAGGGGCACGG
TTAGTCTGTTTCCCACCATATACGAGTACTGA
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