mRNA_P-littoralis_Contig673.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.10.1
Unique NamemRNA_P-littoralis_Contig673.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig673.10.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-14
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:  719 RIGCLLHILHLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 886
            R+G +LHILH+++ AG  S+FFMGPL + SWHEW   H+ +LLG +WYNTSRS+SS
Sbjct:   67 RLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMVWYNTSRSNSS 122
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BLAST of mRNA_P-littoralis_Contig673.10.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.780e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 2 
Query:  767 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCISW 898
            M+  FFMGPL + SWHEW   HLVALL +LWYN SRSDSSCISW
Sbjct:    1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISW 44
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BLAST of mRNA_P-littoralis_Contig673.10.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.610e-7
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  767 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 886
            M S++FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESS 40
[Close]
BLAST of mRNA_P-littoralis_Contig673.10.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.470e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  767 MQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSS 886
            M S  FMGPL + SWHEW + H+ +LLG +WYNTSRS+SS
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESS 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE2.580e-1460.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE2.780e-1172.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI1.610e-762.50Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KH75_9PHAE5.470e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:26841..27738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size899
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.2578437-UTR-P-littoralis_Contig673:26840..274351680791402.2578437-UTR-P-littoralis_Contig673:26840..27435Pylaiella littoralis U1_48UTRP-littoralis_Contig673 26841..27435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791402.26994-CDS-P-littoralis_Contig673:27435..277381680791402.26994-CDS-P-littoralis_Contig673:27435..27738Pylaiella littoralis U1_48CDSP-littoralis_Contig673 27436..27738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.10.1prot_P-littoralis_Contig673.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 27436..27738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.10.1

>prot_P-littoralis_Contig673.10.1 ID=prot_P-littoralis_Contig673.10.1|Name=mRNA_P-littoralis_Contig673.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MADSAQGRGQQPQSNNQFQQVESEPAPAAAASAFDGFVFAIRIGCLLHIL
HLAVNAGMQSLFFMGPLTQASWHEWPKPHLVALLGSLWYNTSRSDSSCIS
W
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mRNA from alignment at P-littoralis_Contig673:26841..27738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.10.1 ID=mRNA_P-littoralis_Contig673.10.1|Name=mRNA_P-littoralis_Contig673.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=898bp|location=Sequence derived from alignment at P-littoralis_Contig673:26841..27738+ (Pylaiella littoralis U1_48)
GCGACGGGCGGCACGTGGCCCCACCGGCGAGACTTGCTGCAAGAGCCTCT
TCAGGTGAATGAGTGCATATGCTCGCGGGTTGATGGTGTTAGTGGGCTGT
ACTACAAGTTTCGGAAGCAACGTGCTGCAGCGGCCGGGGGAAGCTCGTCG
TTGATGGAGACCGGACAAAGGGCCCTTCTTGGGCGGTATCCGTCGCTTCC
TCAGCTGGTGATTATTATCCTGTGTGCATGTGACTGCTGTTAGAAAAAGT
ATGACAGTTAGGGCTGCGCCTGACCCCCCTTTTTGAGGGTAAAATATGTC
CGGAGTTCGTTCCGAAAATGATGAATAGATTTATTTTAGCCAATCATATA
ACAACATTTTGAGTGACGTTTTCATCTGTTGGAACCGAAGAGCCCAAAGA
ACAAACCAAAGAACGGCGAGTACGTGTGTGTGCCGGTGCTGCTGCTGCTC
TCACGATTTTCTCTCAAGCGCTCTAGAGGCGCGATGCTGATGAAGCAGCA
GTAACAGCAGCACTAGCAGTGTGCACTGCTGTGCAAAGCAGCCGCCTGTG
ATTCAACAAGCAGCAGTAGCCAGATCACACCACCAGTGGGCCGCCATGGC
CGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGAGCAATAATCAATTTC
AACAAGTAGAGAGCGAGCCTGCTCCTGCTGCTGCTGCTTCTGCTTTCGAT
GGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTTGCACATCCTGCACCT
CGCGGTGAATGCGGGGATGCAGTCTCTGTTTTTCATGGGCCCCCTCACTC
AGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTCGTCGCTTTACTTGGA
TCACTTTGGTACAACACCTCCAGGTCGGATTCATCTTGTATTTCATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:26841..27738+

>mRNA_P-littoralis_Contig673.10.1 ID=mRNA_P-littoralis_Contig673.10.1|Name=mRNA_P-littoralis_Contig673.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig673:26841..27738+ (Pylaiella littoralis U1_48)
ATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCCAGAGCAATAATCA
ATTTCAACAAGTAGAGAGCGAGCCTGCTCCTGCTGCTGCTGCTTCTGCTT
TCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTCTTGCACATCCTG
CACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTTTTCATGGGCCCCCT
CACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACCTCGTCGCTTTAC
TTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCATCTTGTATTTCA
TGG
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