mRNA_P-littoralis_Contig673.6.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE) HSP 1 Score: 427 bits (1099), Expect = 4.710e-136 Identity = 210/359 (58.50%), Postives = 251/359 (69.92%), Query Frame = 2
Query: 371 RWRILPALLVVTVAALGGF*LWVSS--TSSSAAELTVVRLGWDGGREEWLRGRETRHTRRDAVLLPPDWDSASCLQRWGLPRLQTEPDPVGYIVFVNGR*EPSRGGAVETRRRDRSEQLLKP*AFREQLGCTRFLMSDGLFIAKTLNRTLVEFPVANARIVGADSDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTEVIVMKNQWKSSIRREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYGHVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTYAKVCLRTLKASEDIVVNQPALFLL 1441
RWR+L AL+ AA+ +WV S T SA ELT VRLGW+GGR EW+RG+ RRDA LPP+W SA C++RWG+P L TEPDP GY++FVNGR EQLG R+L+SDGL+IAKTLNRTLVEFPVANARI ADSDLGFGAYW DSLCRYHRIL L AFRS+I+ GR+D + F+ MTP A PM L+TAKDVREAF GY+ ++VIVM +QWKS+IRREP+ L +PLPFY +LARRL+D+QQGWE E +L VQWRTETSTGNLT CYGHVR+ +E YR +EGF RGQVFFNTDL H S TY+ S+ + V Q L ++
Sbjct: 56 RWRVLKALVATLAAAVAA--VWVPSLWTRQSAVELTTVRLGWEGGRGEWMRGQRELQERRDARFLPPEWSSADCMKRWGVPWLLTEPDPAGYLIFVNGR---------------------------EQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWGLDSLCRYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLKTAKDVREAFGGYEDSQVIVMNDQWKSNIRREPLKLIKPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYS---------SQQLAVKQQVLAMI 376
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 6.180e-133 Identity = 207/336 (61.61%), Postives = 241/336 (71.73%), Query Frame = 2
Query: 371 RWRILPALLVVTVAALGGF*LWVSS--TSSSAAELTVVRLGWDGGREEWLRGRETRHTRRDAVLLPPDWDSASCLQRWGLPRLQTEPDPVGYIVFVNGR*EPSRGGAVETRRRDRSEQLLKP*AFREQLGCTRFLMSDGLFIAKTLNRTLVEFPVANARIVGADSDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTEVIVMKNQWKSSIRREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYGHVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTYA 1372
R R+L AL+ AA+ +WV S T SAAELT V+LGW+GGR EW RG+ RRDA LPP+W SA C++RWG+P L TEPDP GYI+FVNGR EQLG R+L+SDGL+IAKTLNRTLVEFPVANARI ADSDLGFGAYWD DSLC+YHRIL L AFRS+I+ GR+D + F+ MTP A PM LRTAKDVREAF GY+ ++VIVM QWKS+IRR P+ L RPLPFY +LARRL+D+QQGWE E +L VQWRTETSTGNLT CYGHVR+ +E YR +EGF RGQVFFNTDL H S TY+
Sbjct: 58 RRRVLKALVATLAAAVAA--VWVPSLWTRESAAELTTVQLGWEGGRGEWTRGQRKLPERRDARFLPPEWGSAGCMKRWGVPWLLTEPDPAGYIIFVNGR---------------------------EQLGSNRYLLSDGLYIAKTLNRTLVEFPVANARISRADSDLGFGAYWDLDSLCQYHRILGLGAFRSLIEAGRLDVEKFLVMTPVRPSADPMSTLRTAKDVREAFGGYEDSQVIVMNGQWKSNIRRYPLKLIRPLPFYENLARRLIDQQQGWENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYS 364
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 263 bits (672), Expect = 1.590e-71 Identity = 122/174 (70.11%), Postives = 143/174 (82.18%), Query Frame = 3
Query: 2472 SDSSCISWKRFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEA 2993
SDSSCISW+RFQNLVFG KGV W KFIRPAETRWMV+W+ AA+LE+RW++VRWL +EWAA LL TPFM YWFK+ CML +PLIRVHAKFC AL K +LSWAYNW+RGEGGY L+G GV +RLP GMRLA++ DFSLLL+ RL ELR HP KYFP+LL +A + L +EE A
Sbjct: 286 SDSSCISWERFQNLVFGCKGVKWGCKFIRPAETRWMVVWDAAALLEDRWDEVRWLHLEWAAAKLLGTPFMDYWFKSLCMLDDPLIRVHAKFCVALRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSA 459
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.360e-60 Identity = 121/305 (39.67%), Postives = 166/305 (54.43%), Query Frame = 2
Query: 464 ELTVVRLG--WDGGREEWLRGRETRHTRRDAVLLPPDWDSASCLQRWGLPRLQTEPDPVGYIVFVNGR*EPSRGGAVETRRRDRSEQLLKP*AFREQLGCTRFLMSDGLFIAKTLNRTLVEFPVANARIVGAD-SDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTEVIVMKNQWKSSIRREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYGHVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTY 1369
E+TV +G +D G + + + PP WDS C+ WG+P LQ EPDP GY+V+VNGR EQLG +FL+SDG+F+AK L RT VE+PV +AR+ + + +G GAYWD LC YHRIL L +FR+M+ DGR+ + F T+ + + A V + F Y+ +VIVM++ WKS R+ + RP PF+V + R L++ Q+ WE ++ VQWRTE S GNLT CY V+ +EE R G+ QV FNTDL S TY
Sbjct: 180 EITVGTVGESFDVRENGASAGPQEQALTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGR---------------------------EQLGGNKFLVSDGIFMAKALGRTFVEYPVKDARVAKLEEASIGLGAYWDLSELCMYHRILDLNSFRNMMVDGRIPPEAFTTIRSDSHEVLLYHATDEEHMV-DMFKDYEKYQVIVMESTWKSGNERDALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELSNGNLTECYQEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTY 456
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI) HSP 1 Score: 222 bits (566), Expect = 6.290e-60 Identity = 120/308 (38.96%), Postives = 165/308 (53.57%), Query Frame = 2
Query: 464 ELTVVRLG--WDGGREEWLRGRETRHTRRDAVLLPPDWDSASCLQRWGLPRLQTEPDPVGYIVFVNGR*EPSRGGAVETRRRDRSEQLLKP*AFREQLGCTRFLMSDGLFIAKTLNRTLVEFPVANARIVGA-DSDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTE---VIVMKNQWKSSIRREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYGHVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTY 1369
E+TV +G +D G + + + PP WDS C+ WG+P LQ EPDP GY+V+VNGR EQLG +FL++DG+F+AK L RT VE+PV +AR+ D+ +G GAYWD LC YHRIL L +FR+M+ DGR+ + F T+ + LR A D +K ++ VI M++ WKS RE + RP PF+V + R L++ Q+ WE ++ VQWRTE + G+LT CY V+ +EE R G+ QV FNTDL S TY
Sbjct: 55 EITVGTVGESFDVRENGASAGPQEQPLTEGTLATPPAWDSTLCMAHWGVPELQDEPDPNGYVVYVNGR---------------------------EQLGGNKFLVTDGIFMAKALGRTFVEYPVKDARVAKLEDASIGLGAYWDLSELCMYHRILDLTSFRNMMADGRIPPEAFTTIRSDTHEVL----LRHATDEEHIVDMFKDSDKYQVIAMESTWKSGKEREALQFLRPNPFFVGIVRMLLEAQKDWETGEFVAVQWRTELANGDLTECYKEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTY 331
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: D7G2V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI) HSP 1 Score: 180 bits (457), Expect = 1.130e-46 Identity = 91/180 (50.56%), Postives = 121/180 (67.22%), Query Frame = 2
Query: 833 NARIVGADSDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTEVIVMKNQWKSSIRREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYG-HVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTY 1369
++RI AD+DLG Y+D + LC YHRIL L AFR+++ D + A+ F+T+ A + + +L TA ++ F Y +VIVMK WKS++RREP+ L RP P Y+D +L++ Q+GW+ G+L+VQWRTETSTGNLT CYG HVR +EE R GF R QVFFNTDL STTY
Sbjct: 3 HSRISTADADLGSCDYFDCERLCSYHRILDLWAFRALLRDRLLSAEDFLTVLSAEWEQTLLPSLVTAGNITSFFEEYDQWQVIVMKMAWKSALRREPVDLLRPNPLYLDSVGQLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTY 182
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 182 bits (462), Expect = 3.470e-46 Identity = 91/148 (61.49%), Postives = 107/148 (72.30%), Query Frame = 3
Query: 2463 LSWSDSSCISWKRFQNLVFGSKGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRL 2906
+S SDSSCISW+R +NLVF +KGV+W KFIRPAETRWMVI + AA+LEERW++ +T ML +PLIRVHAKFC AL KA+LSWAYNW+RGEGGYFL+G GV +RLPPGMRLAE DFSLLL+ RL
Sbjct: 34 ISRSDSSCISWRRVKNLVFRAKGVMWICKFIRPAETRWMVIRDAAALLEERWDE------------------------STYMLDDPLIRVHAKFCVALRKAVLSWAYNWIRGEGGYFLEGTGGVAERLPPGMRLAEAADFSLLLVKRL 157
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE) HSP 1 Score: 173 bits (438), Expect = 2.070e-45 Identity = 92/194 (47.42%), Postives = 122/194 (62.89%), Query Frame = 3
Query: 2439 FLGGIRRFLSWSDSSCISWKRFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEE 3014
LG + S S SS ++R++ +V W KFIRPAETRWMV+ +GA +L ERWEQV WLF E+AA+ L +T F +YW ++ CML++PL+RVH F L + + WAYNW+ G+GG+FLKG +GV +RL PGMRL EV DFS LLL +L + + P YF LL L D + F+ NF E
Sbjct: 26 LLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKG-EGVGRRLSPGMRLVEVADFSRLLLQKLETIHKDPQTYFAALLDRVRTTLSDPMAKVFMLNFSE 218
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.150e-42 Identity = 108/313 (34.50%), Postives = 144/313 (46.01%), Query Frame = 2
Query: 476 VRLGWDGGREEWLRGRETRHTRRDAVL-------------LPPDWDSASCLQRWGLPRLQTEPDPVGYIVFVNGR*EPSRGGAVETRRRDRSEQLLKP*AFREQLGCTRFLMSDGLFIAKTLNRTLVEFPVANARIVGADSDLGFGAYWDFDSLCRYHRILALEAFRSMIDDGRVDADGFVTMTPANKDAAPMKALRTAKDVREAFSGYKTTEVIVMKNQWKSSI-RREPMTLFRPLPFYVDLARRLVDEQQGWEREGYLTVQWRTETSTGNLTRCYG-HVRDRIEEYRTREGFKRGQVFFNTDLPQHVSTTY 1369
V +G + GRE WL+G E R A L +PP WDS++C++ WG+P LQTE DP GY++F GR YHRIL L AFR+++ D + A+GF+T+ A + + +L TA ++ F Y +QW++ RREP+ L RP PFY+ L +L++ Q+GW+ G+L+VQWRTETSTGNLT CYG HVR +EE R GF R QVFFNTDL STTY
Sbjct: 36 VLVGEEAGRE-WLQGAEARSGDSTAALEGVQQVEGRRSTNIPPRWDSSTCMESWGVPELQTEVDPGGYLLFSEGR---------------------------------------------------------------------------------YHRILDLWAFRALLRDRLLSAEGFLTVLSAEWEQTLLPSLVTAGNITSFFEEY---------DQWQARAWRREPVDLLRPNPFYLGLVGKLIEAQEGWKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTY 257
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 166 bits (421), Expect = 2.900e-40 Identity = 88/194 (45.36%), Postives = 125/194 (64.43%), Query Frame = 3
Query: 2439 FLGGIRRFLSWSDSSCISWKRFQNLVFGS--KGVLWKTKFIRPAETRWMVIWEGAAILEERWEQVRWLFVEWAAKVLLRTPFMSYWFKATCMLQNPLIRVHAKFCGALHKAILSWAYNWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEE 3014
LG + S S+SS +++R++ +V W KF+RPAETRWMV+ +GA +L +RWEQV WLF E+AA+ L +T F +YW ++ ML++PL+RVH F L + + WAYNW+RG+GG+FLKG +GV ++L PGMRL EV DFS LLL +L +R+ P YF +L L + + F+ NF E
Sbjct: 26 LLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKLLCKRWEQVEWLFCEYAARNLNKTTFRNYWLQSAYMLRDPLVRVHVMFTARLGELLFDWAYNWIRGKGGFFLKG-EGVGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSE 218 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig673.6.2 >prot_P-littoralis_Contig673.6.2 ID=prot_P-littoralis_Contig673.6.2|Name=mRNA_P-littoralis_Contig673.6.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=259bp MSDGLFIAKTLNRTLVEFPVANARIVGADSDLGFGAYWDFDSLCRYHRILback to top mRNA from alignment at P-littoralis_Contig673:18875..28594+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig673.6.2 ID=mRNA_P-littoralis_Contig673.6.2|Name=mRNA_P-littoralis_Contig673.6.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9720bp|location=Sequence derived from alignment at P-littoralis_Contig673:18875..28594+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig673:18875..28594+ >mRNA_P-littoralis_Contig673.6.2 ID=mRNA_P-littoralis_Contig673.6.2|Name=mRNA_P-littoralis_Contig673.6.2|organism=Pylaiella littoralis U1_48|type=CDS|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig673:18875..28594+ (Pylaiella littoralis U1_48)back to top |