mRNA_P-littoralis_Contig673.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig673.1.1
Unique NamemRNA_P-littoralis_Contig673.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig673.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig673contigP-littoralis_Contig673:2168..2812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size625
Hectar predicted targeting categorysignal anchor
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.7706735-UTR-P-littoralis_Contig673:2167..23931680791401.7706735-UTR-P-littoralis_Contig673:2167..2393Pylaiella littoralis U1_48UTRP-littoralis_Contig673 2168..2393 -
1680791401.806884-UTR-P-littoralis_Contig673:2800..28121680791401.806884-UTR-P-littoralis_Contig673:2800..2812Pylaiella littoralis U1_48UTRP-littoralis_Contig673 2801..2812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.783708-CDS-P-littoralis_Contig673:2393..24621680791401.783708-CDS-P-littoralis_Contig673:2393..2462Pylaiella littoralis U1_48CDSP-littoralis_Contig673 2394..2462 -
1680791401.7934082-CDS-P-littoralis_Contig673:2482..28001680791401.7934082-CDS-P-littoralis_Contig673:2482..2800Pylaiella littoralis U1_48CDSP-littoralis_Contig673 2483..2800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig673.1.1prot_P-littoralis_Contig673.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig673 2394..2800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig673.1.1

>prot_P-littoralis_Contig673.1.1 ID=prot_P-littoralis_Contig673.1.1|Name=mRNA_P-littoralis_Contig673.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MGFWRWKAAHHRRDAPSARVSNPPKARYFVSFDLKFFGFRVGWILLSTAV
TVGSWRFISCDFFHVFCHNFCCAGHLCLKVVLVKFVLVSVGSQLLCHRDI
LPHISLLFLHVLRACGTPVLWIDITSQR*
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mRNA from alignment at P-littoralis_Contig673:2168..2812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig673.1.1 ID=mRNA_P-littoralis_Contig673.1.1|Name=mRNA_P-littoralis_Contig673.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig673:2168..2812- (Pylaiella littoralis U1_48)
TTGTTTTGGGTGATGGGCTTCTGGAGGTGGAAAGCAGCACATCACCGCCG
GGACGCGCCTTCTGCTAGGGTTTCAAACCCGCCCAAGGCACGTTATTTTG
TTTCTTTTGATTTGAAGTTCTTTGGTTTTCGCGTTGGATGGATATTGCTT
TCTACAGCAGTAACTGTTGGGTCATGGAGATTTATTTCGTGTGATTTTTT
CCATGTGTTTTGCCACAATTTTTGTTGTGCTGGTCATTTATGCCTGAAAG
TTGTGCTAGTGAAATTTGTTTTGGTTTCTGTAGGTTCGCAACTGCTGTGT
CATCGAGATATTTTACCGCATATCTCGCTCAGATCTATTTAGCATGTTCA
TTATTCTTGCACGTTTTGCGAGCATGCGGTACTCCTGTTTTATGGATCGA
TATCACTTCGCAACGATAAAGTTCTTGATTTTTTATCTCGGTATTTGTTT
GTTTGCAGCATCATTTCATCGGCATTCCAGCGTCTCACTTTACAGACACA
ACGTGCACAATGTTTTTCTACTCTGCGTTTGTTGGAATATTTCACGAAAT
CGCCACATTTGCTCACACTCATCTTGGCATTGGAAATTGTTTTATTGACA
ACGGCATCGTGAGTACGGCACGAAGTGAACTGATGCCTATCGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig673:2168..2812-

>mRNA_P-littoralis_Contig673.1.1 ID=mRNA_P-littoralis_Contig673.1.1|Name=mRNA_P-littoralis_Contig673.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig673:2168..2812- (Pylaiella littoralis U1_48)
ATGGGCTTCTGGAGGTGGAAAGCAGCACATCACCGCCGGGACGCGCCTTC
TGCTAGGGTTTCAAACCCGCCCAAGGCACGTTATTTTGTTTCTTTTGATT
TGAAGTTCTTTGGTTTTCGCGTTGGATGGATATTGCTTTCTACAGCAGTA
ACTGTTGGGTCATGGAGATTTATTTCGTGTGATTTTTTCCATGTGTTTTG
CCACAATTTTTGTTGTGCTGGTCATTTATGCCTGAAAGTTGTGCTAGTGA
AATTTGTTTTGGTTTCTGTAGGTTCGCAACTGCTGTGTCATCGAGATATT
TTACCGCATATCTCGCTCTTATTCTTGCACGTTTTGCGAGCATGCGGTAC
TCCTGTTTTATGGATCGATATCACTTCGCAACGATAA
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