mRNA_P-littoralis_Contig672.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig672.30.1
Unique NamemRNA_P-littoralis_Contig672.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig672.30.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.690e-67
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MDQDGLFLMLKMCNGCSHKKGSWKKCMSRRHNPRMSTVRQEELTHGHRQCVKPDQAITIYKLRDHETNDEFLEFDEEIIFQTACLDCLNIKSCIK--HKLVDWRPTFAGGRMAGSPSP 348
            MDQDGLFLMLKMCNGCSH KGSWKKCMSRRHNPRMSTVR++ELT+ HRQCVKPDQAITIYKL DHETN+++LEFDE+IIFQTAC  CLNIKSC++  HKL+DWRPTFAGGR+AGS  P
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHP 118
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BLAST of mRNA_P-littoralis_Contig672.30.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.630e-52
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 MDQDGLFLMLKMCNGCSHKKGSWKKCMSRRHNPRMSTVRQEELTHGHRQCVKPDQAITIYKLRDHETNDEFLEFDEEIIFQTACLDCLNIKSCIKHKLVDWRPTFA-GGRMAG 336
            MDQDGLFLMLKMCNGCSH KGSWKKCMSRRHNPRMSTVR++ELT+ HRQCVKPDQAITIYKL DHETN+++LEFDEEIIFQTAC  CLNIKSC++   V +  TF  GG+ AG
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKV-FSATFGKGGKSAG 112
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BLAST of mRNA_P-littoralis_Contig672.30.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.100e-24
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 MDQDGLFLMLKMCNGCSHKKGSWKKCMSRRHNPRMSTVRQEELTHGHRQCVKPDQAITIYKLRDHETNDEFLEFDEEIIFQTACLDCLNIKSCIK--HKLVDWRPTFAGGR 327
            MD DG  L++  CN C   K   + C+ R+HN R++ V+++EL   HRQCVKPDQ +TI+KL D  T +E +E+  ++IFQ  C  C+++K+CI   H+L DW P    GR
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGR 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U1_ECTSI1.690e-6783.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE1.630e-5278.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T9_ECTSI2.100e-2444.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:155913..160954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size387
Hectar predicted targeting categoryother localisation
Exons4
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.6925135-CDS-P-littoralis_Contig672:155912..1559721680791401.6925135-CDS-P-littoralis_Contig672:155912..155972Pylaiella littoralis U1_48CDSP-littoralis_Contig672 155913..155972 +
1680791401.7099922-CDS-P-littoralis_Contig672:159639..1597441680791401.7099922-CDS-P-littoralis_Contig672:159639..159744Pylaiella littoralis U1_48CDSP-littoralis_Contig672 159640..159744 +
1680791401.7236788-CDS-P-littoralis_Contig672:160353..1604721680791401.7236788-CDS-P-littoralis_Contig672:160353..160472Pylaiella littoralis U1_48CDSP-littoralis_Contig672 160354..160472 +
1680791401.7335172-CDS-P-littoralis_Contig672:160851..1609541680791401.7335172-CDS-P-littoralis_Contig672:160851..160954Pylaiella littoralis U1_48CDSP-littoralis_Contig672 160852..160954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.30.1prot_P-littoralis_Contig672.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig672 155913..160954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig672.30.1

>prot_P-littoralis_Contig672.30.1 ID=prot_P-littoralis_Contig672.30.1|Name=mRNA_P-littoralis_Contig672.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MDQDGLFLMLKMCNGCSHKKGSWKKCMSRRHNPRMSTVRQEELTHGHRQC
VKPDQAITIYKLRDHETNDEFLEFDEEIIFQTACLDCLNIKSCIKHKLVD
WRPTFAGGRMAGSPSPFSASDQPPPLLR*
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mRNA from alignment at P-littoralis_Contig672:155913..160954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig672.30.1 ID=mRNA_P-littoralis_Contig672.30.1|Name=mRNA_P-littoralis_Contig672.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5042bp|location=Sequence derived from alignment at P-littoralis_Contig672:155913..160954+ (Pylaiella littoralis U1_48)
ATGGATCAGGATGGCTTGTTTCTGATGCTCAAGATGTGTAATGGCTGCAG
TCACAAAAAGGTGAGCTGTGAATCGGATCGATCTCTCGACAACAAAACCA
CTGCCGACAAGAAAGAGATACGCCGGCGGTGTCTTTGGTTACTTGCTTGC
TTTTTTGCCTTGCGGCATCAAGTAGCGTAGCGGAAACAGCAGCAAGGACG
GAAGGCTCGTCGGCTCCTTCTCCTCTCTATCTCTCTTTCGCTCTCCCTCG
TCTTCTCTTTCCCTCTCTTCCTCTCGTCTCATCTCTCTATTTGTCGTGGT
TCGTTGTTCTACGAAGGGTCGACGTTAGTTGGTCGCGCTTCGCCGAGCTC
CTCGCGTCACAGTCAAACAGCTACATGGACGACCGTGGGGCACCTCGTAC
ACAAAAGCAGCGCAGTCGGGGAGATCGATCTCATCTGCATCGCACACACG
CACACCCTAAGCTTCCGTCTGCAGGTTGCACCTACTGACCCATACGACAA
TGCGGTGTTCGTGACGGACATCGACAGCTTGCTTTTGAAGCCTTGCTTTC
TCCTCGCCGGCTTCACACTTGCTCGAGAAGGGCAAGACCCAACAAGTTTG
TAGGAAACCGGCGTTGTTGGTAAATATATCGTTCAATTGATATCGTTACT
TCTTCCCGCCGTGTCCGTGCGGTGCTTGCTGCCCGATTGGCGGTGACAGC
TGCTGCTGCAGCCCTCGCCCTCACGCGAGTAGACCCGCTCCAGAAGCCGC
ATGTCAACACTGCTGTCGTATAACCGATTGGAGGTATGCGGCGTGCGGAT
AAAGATGAAGGCCGCCTTTGGTGCCGTCATCTAACGTCTGAGGACTGATC
ATTTTGGCGGGCCCAACTCTGTAGAAAGGTGGAAACAACAAGACACCGAC
CAGCCCGAGCCCACAATTTTGTACAAGCACGAAGTTACAATAACGTTCAT
GGGTCACGAGGTTGTCCCAGCGACGGACTTGTTGTTGCTGCGGCCCGGCC
CCGTGTGTGCAGTCGAGCTGTTGTGAGGTTGCTGTGGTGCGGCCGCCGTT
CGGTTGTCAAGCAAACAAGAACAACACGTAGTGTCCACGATGCATAATAT
CATAGGACCAAGTAATTCGAAGACGAAGTACAGCAGTGTAATTCGATTTA
CAAATTCGATTTGATTTTTTGAAAAGCTTTCGGACAAATCGTCCAAAATA
AAATTTTCGTTTACATATCTAGAAAAACTAAGTTTACTTCTTAGGTACTC
CGGAGTATTATTCGCATCTGGTTTGTACTTCGAAGTAGATGATACGATCT
CTGCTGCTGTATGCGTCGTATTCATGACGCGTTTTGGAGAGCTGCTGTAA
TCGAGTTTCCTCCCCACAGCATGTCGCCAACAACAACAAAAAGACGAGAG
CGAGCGCCGTATTGTTGTCTTGATTGTTTAAATGCTTTATGTAATACTCC
GTACGAAGTACTACTGCTGTACGTACGTATTCGATGCAGTTCGAGGAGCA
ACACGTGTTGTCCAGAGTCCAGCAGTTCCAGGTGCAGCAGTATGACATGA
ATTTATGAATTTGGCTAGTGTCGTGTTTCGTACCAGTGGTAGTTTGCAGT
TGGACTTCAATACAACCGCCGGCAGCTGCATGGGTCTTAAATCATGTCGT
CAGTGATTTTGCAGGCAGCCTTCATCAACGACGTTATTTTTGAGCAACGA
GTAATTAGACTGAGCTGCCTAGGGTTAGGGTTAGGGTTAGGCGAACCCTA
AGTACATAAATCTACGAAGTACTTCGTACTCAATGAAGTTGGCTCTTGAC
GCTACTGACATATTCACGTATACGAAGTATACGAACACTAGCATACACGT
AGCACCGACCGCCACATTTTATTTCGCGTATATATGGTCCATGCACGACA
ATTTGTCCATTCACGTTTTATGCGATAACTTTAAAACAAAAAATATTTGG
AACGTGAAACATCGACAGTCGTGATCGCCTCGTCGAGCTACGTCGATAGC
CGCAGAGTTCTTTTTTTTGAGAAAATGCAACATTTTGGGCCAAAATGACC
CACGGAGCCCCCCAAATCGCCACGGAGCCCCCTTAGTCACCACGGAACCC
CCGAGAATCGTCACGGAACCCCCCTAAATCATCGTCATGTACATATGATA
CATACATATGTATGTATGTACATATATGTATATATCTATATATTACACTA
CCAGTATAACACTCGTATCAACATATGCATATATAATCTAGACACTGTAA
ACCATACACTTGGTATATATATTTATACTTGTATATATTACAGCAGTACC
ACGAGAAATTAAATATACTCCGGAGTATGCGTGATCGAACACACGCTTGC
AGCCCATTGCACGTCACCATTTATTTATGGACACACCCAAACAACCACGT
AGCAACCAACACGGGTGTGCATTTCATACTGCTGAATGTATGTGTGCATT
TATACTGCTGTATGTAGGTCCATACATACAGCAGTATATAATACTTTGTG
TTTTTCCTCGCATTTTACGGTAGAACAAAATATGGAATATCTAGAGAAAT
ATCGTTTTTCTCGAAAAAAAAAATATACCCACCTGGGGATTGACGAGAGG
AATCGTTTGCCGCACTCTATTTTAAAATCGTAGGGTTGAAAATTGAGTTT
AAAAGTTTAAAAGGAAACAAGTCTGTCTTCTATATCCGGTTTTTGGCCGA
TATCTCCATCAATTCCGAATATTTTCAAAAAAAAAAAAATACTCAACTGA
GGAATTCCGAGATCTGTTCGAATCCGTTGAGATATTCGGAATCGACAATC
AACACGACCCCCTGTAAAGGAAACAAGTTTATCCGCTCTTTTGTTGATAA
AAACTCAGAGAACAAAAAAAAAAAGCGTTCCGTCAGAAGATGCGCCTGGA
GACAGCGCGTTTGCCGGTGTCTTTAGATTTCGGAACAACAGTCCCTTACG
TACCAGGTACGGATTGAGAACGACATTGTCCTTGGGTGCGCACACGGGAG
ATTAATGCTACTGAATACTTCAGCACGATGTATGCGAATGCGCCGACCAT
CACCCCTACTCCGTTAACGATCCCCGCTCTTGAGTCGTTGGCATGATGTC
AATGTGATTTGTGAAAGCATGAACGATTTCAATTTTCTTCGCCGACTGTT
GGAGTACTTTTGGTCGGTCTGCCAGCACCCCCCCCCCCTTGTCTCGTTTC
ATTTTTACATTAGAAGAAATGTCCACAATATTATATTGGCACTCCGACAG
AAAGTGTACTTCGTCTGTATTAGCAGACGAAGTCCAGGGCACACAAAAAC
AAGTTTCGCGGTTGTTTTCAGAAGTAAGTCGGAAGGCGGGTTGTTCGACG
CTATATCATTTTTCGTTAGGCCCACTCCGCACTTCACGTTATTTGGGATG
ATGTAACGGTATGGGGCGTCATACTACAAAGTAGAAGTATAATTTTGTAG
CAGAGCGCACAAAAGCACGGCACCCTGACAAGCACGCAGACAATCGCTCT
CAATTGGGAGATTCGGGGAATCATCATGACGACTGGTGAATCCGTAGTCT
GAAGTCGTGGATTGGACACTTGGTTGCCTGAAGCCGCCAAATTTTGATCG
CGTAAGGCATACCAGTTAAAGTATCCTCTTTTCTCTTGTGTTCTGTTTTT
GGTGTGTTTTTCGTCTCTCGTGTGTTTCGTGTTTTTTCATCGTTTCATCG
CGGCGGTGGCGGCGACGGTACCGACAGGGGAGCTGGAAAAAGTGCATGTC
CAGGAGGCACAACCCGAGGATGTCCACCGTACGGCAAGAGGAGCTCACGC
ACGGGCACCGGCAGTGCGTGAAGCCTGACCAGGTGATTCGTCGTCCCAGA
CCCCCCGAGAGTTGAAAATAACTTCACCATGTTCCTGGTATATTATATCA
TGTGATCAACGTTTGTACGAAGTACTTCGAAGTATGATTTCAGGGCGTCC
GAGCGGCAACGAGCGTCGATTTATCGAGTCTTTGTCGCTTTTTGTTTCGC
CTTCTTTTTTTTTCGAGCAGAGAGCACAACAAGTCTTGAGAAACATCAGG
AAAACGCCAAGAGATTAGCACCACCCACCTGAGGCGGGACTGCGGAGAAT
TTCTTGAATTATCTGCAGAGAGGAGGTGTAGTTTGTCGGTCGGAAAAAAA
AAAAAAAAAAACGCCCACATAGACACACGGCAGTTTATTGTAGTTTTGGG
TCGGAGAATGATAATACTCATTTTGAAAAATTATCACCCAGAGGAAACGA
GGCTCTTTCGGTCTGGCGTCGGAAATCCACCTTCCGCTCCTTCGCCACAC
CTAATAAGGACTGCTGGTGCTAGTCTTACCGTAGCCTACTTTTGGTTTTC
TGCTCAAACCAACCTGGCAAAACTCGCGATTTCGACACCTCATTCTTGTG
CGTACCTATCATACCCCCGCACCGTCGTTCGCCGCTCAAAGGCCATTACA
ATCTACAAACTCCGCGACCACGAGACGAACGACGAATTCCTCGAGTTCGA
CGAGGAGATTATTTTCCAGACGGCGTGCCTGGATTGCCTCAACATCAAGT
CCTGCATCAAGTAAGCAAACTCCCGGTGTTCTTGGTCGGTGTCAAGAGGA
CTCGGTCAGCGCGAAGGTCACCTGAATCTAAATCTATGTGCCGGGCCATT
ACGATGACACGCAAAAAAATATATATTCAGCTGTGCGGCACTAGTAAAGA
CGACAGAGTCTCGACGTGCGACATCCTGGTTTACGCGGCCCGACGTGACA
TTTAACAAGAGCATCGTACTGTTGTTCAGTGTCTTCCTTAGGTGGATATC
GGCTGCCGGTGACACGAGAAATCATTTGTACGCACACACACACATTCTTC
TACAAATATCGACGTGACCTATGACCTACTCTGAAGTGCTCACCGTCGAC
CGCACGTGTAACCCTAACCTTTATAAACTCAGCGCCGAGGCACAAGCTCG
TCGACTGGCGACCCACTTTTGCCGGCGGAAGAATGGCCGGATCTCCATCG
CCATTTTCGGCGTCTGATCAACCTCCGCCTCTTCTTCGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig672:155913..160954+

>mRNA_P-littoralis_Contig672.30.1 ID=mRNA_P-littoralis_Contig672.30.1|Name=mRNA_P-littoralis_Contig672.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig672:155913..160954+ (Pylaiella littoralis U1_48)
ATGGATCAGGATGGCTTGTTTCTGATGCTCAAGATGTGTAATGGCTGCAG
TCACAAAAAGGGGAGCTGGAAAAAGTGCATGTCCAGGAGGCACAACCCGA
GGATGTCCACCGTACGGCAAGAGGAGCTCACGCACGGGCACCGGCAGTGC
GTGAAGCCTGACCAGGCCATTACAATCTACAAACTCCGCGACCACGAGAC
GAACGACGAATTCCTCGAGTTCGACGAGGAGATTATTTTCCAGACGGCGT
GCCTGGATTGCCTCAACATCAAGTCCTGCATCAAGCACAAGCTCGTCGAC
TGGCGACCCACTTTTGCCGGCGGAAGAATGGCCGGATCTCCATCGCCATT
TTCGGCGTCTGATCAACCTCCGCCTCTTCTTCGCTGA
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