mRNA_P-littoralis_Contig672.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig672.24.1
Unique NamemRNA_P-littoralis_Contig672.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig672.24.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.050e-26
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 1 
Query:    1 GSSCSSDGAAAGLEASDCCGSNIKASGVFCGDGVNPAPCILGG------ASTSTCSDDVTVGVDGKGVVCCPTSCSQCTGSGCSAAG-------DDXXGGGIVASGVYCQNGINDAPCILGSPPAPTPVPA 354
            G+ C++ GAA GL+ S CCG  +KAS  +C D  N APCI+G        S +TCS+ +  G+DG GVVCCP  C QC G+GC+ +G           GG I ASG YC    NDAPCI+GS PAP+P P+
Sbjct:  217 GTGCNTSGAAFGLDGSSCCGGGVKASDEYC-DETNEAPCIIGSRPTPSPTSANTCSNGLE-GIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDE-TNDAPCIIGSSPAPSPTPS 344
[Close]
BLAST of mRNA_P-littoralis_Contig672.24.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.050e-24
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    1 GSSCSSDGAAAGLEASDCCGSNIKASGVFCGDGVNPAPCILGGASTS--TCSDDVTVGVDGKGVVCCPTSCSQCTGSGCSAAG-------DDXXGGGIVASGVYCQNGINDAPCILGS 327
            G+ C+  G+AAGL +  CCG  IKASG +C D  N APCI+G   T+  TCS+ +  G+DG GVVCCP  C+QC G+GC+ +G       +   GGGI ASG YC +  N+APCI+GS
Sbjct:  496 GTGCTMSGSAAGLGSESCCGGGIKASGAYCDD-TNEAPCIIGSRPTTVETCSNGLE-GIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDD-TNEAPCIIGS 610
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE1.050e-2648.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV4_ECTSI1.050e-2450.00Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:99371..99906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQV4
PFAMsGlyco_hydro_88
Model size362
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.72e-25
EggNOG OGs2CYCX@1|root,2S3MN@2759|Eukaryota
DescriptionGlycosyl Hydrolase Family 88
Cds size360
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.362296-CDS-P-littoralis_Contig672:99370..996001680791401.362296-CDS-P-littoralis_Contig672:99370..99600Pylaiella littoralis U1_48CDSP-littoralis_Contig672 99371..99600 -
1680791401.3752038-CDS-P-littoralis_Contig672:99776..999061680791401.3752038-CDS-P-littoralis_Contig672:99776..99906Pylaiella littoralis U1_48CDSP-littoralis_Contig672 99777..99906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.24.1prot_P-littoralis_Contig672.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig672 99371..99906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig672.24.1

>prot_P-littoralis_Contig672.24.1 ID=prot_P-littoralis_Contig672.24.1|Name=mRNA_P-littoralis_Contig672.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
GSSCSSDGAAAGLEASDCCGSNIKASGVFCGDGVNPAPCILGGASTSTCS
DDVTVGVDGKGVVCCPTSCSQCTGSGCSAAGDDCCGGGIVASGVYCQNGI
NDAPCILGSPPAPTPVPASV
back to top

mRNA from alignment at P-littoralis_Contig672:99371..99906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig672.24.1 ID=mRNA_P-littoralis_Contig672.24.1|Name=mRNA_P-littoralis_Contig672.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=536bp|location=Sequence derived from alignment at P-littoralis_Contig672:99371..99906- (Pylaiella littoralis U1_48)
GGGTCGTCGTGCAGCTCGGATGGAGCTGCGGCCGGCCTTGAAGCCAGCGA
CTGTTGCGGGTCAAACATCAAGGCTTCCGGCGTGTTCTGTGGTGACGGCG
TCAACCCAGCACCATGCATCCTTGGCGGAGGTACGCTAGTAGCGCAGCCT
TATTGGGTGATCGTACCTTCCCTGCATCATACGATAAACGATAACTTAAA
GGTGTGTTTTACAATAGTTGTAGGATTCCAGCCGCATGGCGAACGTCCTT
AATACAGCACACAACGCTTCTTCATGTCTGGCATGTGCGCCATCTATCGC
CAACAGCATCGACCTCGACGTGCAGTGACGACGTCACTGTAGGCGTGGAC
GGCAAGGGCGTCGTCTGCTGCCCAACCAGCTGCTCCCAATGCACTGGGTC
AGGATGCAGCGCGGCTGGAGACGATTGCTGTGGGGGGGGCATTGTGGCTT
CCGGCGTGTACTGCCAAAATGGAATCAACGACGCACCCTGCATCCTCGGC
AGCCCCCCCGCCCCCACCCCCGTCCCCGCTTCCGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig672:99371..99906-

>mRNA_P-littoralis_Contig672.24.1 ID=mRNA_P-littoralis_Contig672.24.1|Name=mRNA_P-littoralis_Contig672.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig672:99371..99906- (Pylaiella littoralis U1_48)
GGGTCGTCGTGCAGCTCGGATGGAGCTGCGGCCGGCCTTGAAGCCAGCGA
CTGTTGCGGGTCAAACATCAAGGCTTCCGGCGTGTTCTGTGGTGACGGCG
TCAACCCAGCACCATGCATCCTTGGCGGAGCATCGACCTCGACGTGCAGT
GACGACGTCACTGTAGGCGTGGACGGCAAGGGCGTCGTCTGCTGCCCAAC
CAGCTGCTCCCAATGCACTGGGTCAGGATGCAGCGCGGCTGGAGACGATT
GCTGTGGGGGGGGCATTGTGGCTTCCGGCGTGTACTGCCAAAATGGAATC
AACGACGCACCCTGCATCCTCGGCAGCCCCCCCGCCCCCACCCCCGTCCC
CGCTTCCGTC
back to top