mRNA_P-littoralis_Contig672.11.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 358 bits (918), Expect = 1.640e-111 Identity = 177/271 (65.31%), Postives = 207/271 (76.38%), Query Frame = 2
Query: 2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGA 805
K+PSLD FMD+LD ++GKFPL +T FDM P A+ L VDK TN+YVNLCTT G D RK HQ K RT G TL +PAFE KHIYGM+G+TIT GLTKK RMRKHWS++ D+YP VRECM RDL ELLYCRF+HCSDGNAPP+ GED NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA + R+ KPI HG+K++A+CDI+GYC +SSVDGG+ GDPKLR WF+CPLGRTTR VL V+LGA
Sbjct: 613 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGA 879
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 331 bits (848), Expect = 8.200e-102 Identity = 175/320 (54.69%), Postives = 207/320 (64.69%), Query Frame = 2
Query: 2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPK----------------------------------------------KLP---TGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGA 805
K+PSLD FMD LD ++GKFPL L +T FDM P AV L VDK TN+YVNLCTT P G D RK HQ K RT G TL +PAFE KHIYGM+G+TIT GLT K RMRKHWS++ D+YP VR+CM RDL ELLY RF+HCSDGNAPP+ P TGED NPE+DSK HIR LE+ILN AW EN++ N+WL YDEQM++ VS FA + R +PI HG+K++A+CDI+GYC +SSVDGG+ GDPKLR WF+CPLGRTTR VL V+LGA
Sbjct: 508 KLPSLDTFMDNLD-ESGKFPLHGLMMTCFDMMFPDEAVDLFVDK-TNKYVNLCTTPPLPGAKDTRKAHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGA 825
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KVX6_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX6_9PHAE) HSP 1 Score: 310 bits (794), Expect = 1.720e-101 Identity = 158/282 (56.03%), Postives = 195/282 (69.15%), Query Frame = 2
Query: 5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
+PSLD+FM +P +G+F L+ D+ P A KL +DK TN YV CTT P GE D RK HQ K T G TLG+ + FE++H+ GMIG+ IT GLTKK RMRKHWS++A DNYP V++ MPRD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK LEE+LN AWA NVE + WLSYDEQM+K VSK+++ + Y KPI HG+K+ A CDI GYCL SSVDGG++GDPKLR + +CPL RTTR VL V+LG +L K
Sbjct: 34 LPSLDNFMSHQNPTSGEFSLDLALEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHMDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKSMPRDVFELLYCRFLHCSDPNAPKRLLPAGEENPDYDSKE----LEEMLNTAWATNVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLDRTTRHVLHVLLGECGVLRQK 310
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE) HSP 1 Score: 275 bits (703), Expect = 1.760e-88 Identity = 140/221 (63.35%), Postives = 161/221 (72.85%), Query Frame = 2
Query: 2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
K+PSLD FMD+LD ++GKFPL +T FDM P A+ L VDK TN+YVNLCTT G D RK HQ K RT G TL +PAFE KHIYGM+G+TIT GLTKK MRKHWS++ D+YP VRECM RDL ELLYCRF+HCSDGNAPP+ GED NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA + R+ KPI HG
Sbjct: 106 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQLEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHG 322
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE) HSP 1 Score: 272 bits (695), Expect = 5.920e-88 Identity = 131/212 (61.79%), Postives = 158/212 (74.53%), Query Frame = 2
Query: 215 KKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
K T G TLG+ + FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CMPRD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ + Y KPI HG+K+ A CDI Y L SSVDGG++GDPKLR + +CPLGRTTR VL V+LG +L K
Sbjct: 3 KSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQK 214
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE) HSP 1 Score: 281 bits (719), Expect = 4.440e-86 Identity = 143/224 (63.84%), Postives = 165/224 (73.66%), Query Frame = 2
Query: 2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKV 664
K+PSLD FMD+LD ++GKFPL +T FDM P A+ L VDK TN+YVNLCTT G D RK HQ K RT G TL +PAFE KHIYGM+G+TIT GLTKK RMRKHWS++ D+YP VRECM RDL ELLYCRF+HCSDGNAPP+ GED NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA + R+ KPI HG+KV
Sbjct: 397 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGLKV 616
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KAD5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD5_9PHAE) HSP 1 Score: 254 bits (649), Expect = 4.360e-81 Identity = 128/225 (56.89%), Postives = 156/225 (69.33%), Query Frame = 2
Query: 5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
+PSLD+FM +P +G+F L+ + D+ P A KL +DK TN YV CTT P GE D RK HQ K T G TLG+ + FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ + Y KPI HG
Sbjct: 34 LPSLDNFMSHQNPTSGEFSLDLVLEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 256 bits (653), Expect = 2.850e-79 Identity = 127/212 (59.91%), Postives = 150/212 (70.75%), Query Frame = 2
Query: 215 KKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
K T G TLG+ + FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE WLSYDEQM+K VSK+ G+K+ A CDI GYCL SSVDGG++GDPKLR + +CPLGRTTR VL V+LG +L K
Sbjct: 3 KSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSKYE-------------QGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQK 201
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.610e-78 Identity = 128/225 (56.89%), Postives = 156/225 (69.33%), Query Frame = 2
Query: 5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
+PSLD+FM +P +G+F L+ + D+ P A KL +DK TN YV CTT P GE D RK HQ K T G TLG+ + FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ + Y KPI HG
Sbjct: 34 LPSLDNFMSHQNPTSGEFSLDLVLEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPTGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.450e-75 Identity = 137/247 (55.47%), Postives = 160/247 (64.78%), Query Frame = 2
Query: 2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKK------------------------RTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIK 661
K+PS+D FMD+LD ++GKFPL L + DM P AV DK TN+YVNLCTT P G D RK HQ RT G TL +PAF KHIYGM+G+TIT G TKK R+RKHWS++ D+YP VRECM RDL ELLYCRF+HCSDGNAPP TGED NPE+DSK HIR LE+ILN AW +N++ NQWLSYDEQMVK VS FA + R+ KPI HG+K
Sbjct: 438 KLPSVDTFMDSLD-ESGKFPLHGLMMMCLDMMFPDEAV----DK-TNKYVNLCTTPPLPGAKDARKAHQXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTLGMVTLPEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHW--TGEDKTPNPEFDSKWHIRELEDILNNAWTDNMDFNQWLSYDEQMVKTVSTFANYLMRHSPKKPITHGLK 676 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig672.11.3 >prot_P-littoralis_Contig672.11.3 ID=prot_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNback to top mRNA from alignment at P-littoralis_Contig672:48275..51569+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig672.11.3 ID=mRNA_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3295bp|location=Sequence derived from alignment at P-littoralis_Contig672:48275..51569+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig672:48275..51569+ >mRNA_P-littoralis_Contig672.11.3 ID=mRNA_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig672:48275..51569+ (Pylaiella littoralis U1_48)back to top |