mRNA_P-littoralis_Contig672.11.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig672.11.3
Unique NamemRNA_P-littoralis_Contig672.11.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.640e-111
Identity = 177/271 (65.31%), Postives = 207/271 (76.38%), Query Frame = 2
Query:    2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGA 805
            K+PSLD FMD+LD ++GKFPL    +T FDM  P  A+ L VDK TN+YVNLCTT    G  D RK HQ  K RT G  TL +PAFE KHIYGM+G+TIT GLTKK RMRKHWS++  D+YP VRECM RDL ELLYCRF+HCSDGNAPP+    GED   NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA  + R+   KPI HG+K++A+CDI+GYC +SSVDGG+ GDPKLR WF+CPLGRTTR VL V+LGA
Sbjct:  613 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGA 879          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 8.200e-102
Identity = 175/320 (54.69%), Postives = 207/320 (64.69%), Query Frame = 2
Query:    2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPK----------------------------------------------KLP---TGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGA 805
            K+PSLD FMD LD ++GKFPL  L +T FDM  P  AV L VDK TN+YVNLCTT P  G  D RK HQ  K RT G  TL +PAFE KHIYGM+G+TIT GLT K RMRKHWS++  D+YP VR+CM RDL ELLY RF+HCSDGNAPP+                                                P   TGED   NPE+DSK HIR LE+ILN AW EN++ N+WL YDEQM++ VS FA  + R    +PI HG+K++A+CDI+GYC +SSVDGG+ GDPKLR WF+CPLGRTTR VL V+LGA
Sbjct:  508 KLPSLDTFMDNLD-ESGKFPLHGLMMTCFDMMFPDEAVDLFVDK-TNKYVNLCTTPPLPGAKDTRKAHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGA 825          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KVX6_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX6_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 1.720e-101
Identity = 158/282 (56.03%), Postives = 195/282 (69.15%), Query Frame = 2
Query:    5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
            +PSLD+FM   +P +G+F L+       D+  P  A KL +DK TN YV  CTT P  GE D RK HQ  K  T G  TLG+ +        FE++H+ GMIG+ IT GLTKK RMRKHWS++A DNYP V++ MPRD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK     LEE+LN AWA NVE + WLSYDEQM+K VSK+++ +  Y   KPI HG+K+ A CDI GYCL SSVDGG++GDPKLR + +CPL RTTR VL V+LG   +L  K
Sbjct:   34 LPSLDNFMSHQNPTSGEFSLDLALEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHMDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKSMPRDVFELLYCRFLHCSDPNAPKRLLPAGEENPDYDSKE----LEEMLNTAWATNVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLDRTTRHVLHVLLGECGVLRQK 310          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 1.760e-88
Identity = 140/221 (63.35%), Postives = 161/221 (72.85%), Query Frame = 2
Query:    2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
            K+PSLD FMD+LD ++GKFPL    +T FDM  P  A+ L VDK TN+YVNLCTT    G  D RK HQ  K RT G  TL +PAFE KHIYGM+G+TIT GLTKK  MRKHWS++  D+YP VRECM RDL ELLYCRF+HCSDGNAPP+    GED   NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA  + R+   KPI HG
Sbjct:  106 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQLEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHG 322          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 5.920e-88
Identity = 131/212 (61.79%), Postives = 158/212 (74.53%), Query Frame = 2
Query:  215 KKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
            K  T G  TLG+ +        FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CMPRD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ +  Y   KPI HG+K+ A CDI  Y L SSVDGG++GDPKLR + +CPLGRTTR VL V+LG   +L  K
Sbjct:    3 KSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQK 214          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 4.440e-86
Identity = 143/224 (63.84%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKV 664
            K+PSLD FMD+LD ++GKFPL    +T FDM  P  A+ L VDK TN+YVNLCTT    G  D RK HQ  K RT G  TL +PAFE KHIYGM+G+TIT GLTKK RMRKHWS++  D+YP VRECM RDL ELLYCRF+HCSDGNAPP+    GED   NPE+DSK HIR LE+ILN AW EN++ NQWL YDEQMVK VS FA  + R+   KPI HG+KV
Sbjct:  397 KLPSLDTFMDSLD-ESGKFPLHGSMMTCFDMMFPDEAIDLFVDK-TNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWA--GEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGLKV 616          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KAD5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD5_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 4.360e-81
Identity = 128/225 (56.89%), Postives = 156/225 (69.33%), Query Frame = 2
Query:    5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
            +PSLD+FM   +P +G+F L+ +     D+  P  A KL +DK TN YV  CTT P  GE D RK HQ  K  T G  TLG+ +        FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ +  Y   KPI HG
Sbjct:   34 LPSLDNFMSHQNPTSGEFSLDLVLEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPPGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.850e-79
Identity = 127/212 (59.91%), Postives = 150/212 (70.75%), Query Frame = 2
Query:  215 KKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFNCPLGRTTRQVLWVVLGASPLLSAK 826
            K  T G  TLG+ +        FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE   WLSYDEQM+K VSK+               G+K+ A CDI GYCL SSVDGG++GDPKLR + +CPLGRTTR VL V+LG   +L  K
Sbjct:    3 KSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSKYE-------------QGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQK 201          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.610e-78
Identity = 128/225 (56.89%), Postives = 156/225 (69.33%), Query Frame = 2
Query:    5 MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPA--------FEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHG 655
            +PSLD+FM   +P +G+F L+ +     D+  P  A KL +DK TN YV  CTT P  GE D RK HQ  K  T G  TLG+ +        FE++HI GMIG+ IT GLTKK RMRKHWS++A DNYP V++CM RD+ ELLYCRFLHCSD NAP + LP GE+NP+YDSK HIR LEEILN AWA NVE + WLSYDEQM+K VSK+++ +  Y   KPI HG
Sbjct:   34 LPSLDNFMSHQNPTSGEFSLDLVLEKCLDLTFPQKARKLFLDK-TNAYVKHCTTAPPTGEEDKRKPHQMKKSATLGRVTLGERSEERNTYGMFEEQHIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257          
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.450e-75
Identity = 137/247 (55.47%), Postives = 160/247 (64.78%), Query Frame = 2
Query:    2 KMPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVNLCTTEPKDGEPDLRKNHQKAKK------------------------RTCGYTTLGDPAFEDKHIYGMIGLTITWGLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPKKLPTGED---NPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSKFAAAIRRYMKDKPIPHGIK 661
            K+PS+D FMD+LD ++GKFPL  L +   DM  P  AV    DK TN+YVNLCTT P  G  D RK HQ                            RT G  TL +PAF  KHIYGM+G+TIT G TKK R+RKHWS++  D+YP VRECM RDL ELLYCRF+HCSDGNAPP    TGED   NPE+DSK HIR LE+ILN AW +N++ NQWLSYDEQMVK VS FA  + R+   KPI HG+K
Sbjct:  438 KLPSVDTFMDSLD-ESGKFPLHGLMMMCLDMMFPDEAV----DK-TNKYVNLCTTPPLPGAKDARKAHQXXXXXXXXXXXXXXXXXXXXXXXXXXXTRTLGMVTLPEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHW--TGEDKTPNPEFDSKWHIRELEDILNNAWTDNMDFNQWLSYDEQMVKTVSTFANYLMRHSPKKPITHGLK 676          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.11.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE1.640e-11165.31HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE8.200e-10254.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX6_9PHAE1.720e-10156.03DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KIE0_9PHAE1.760e-8863.35DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMJ3_9PHAE5.920e-8861.79DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE4.440e-8663.84DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KAD5_9PHAE4.360e-8156.89DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KCC7_9PHAE2.850e-7959.91DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JER6_9PHAE1.610e-7856.89DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5K2B4_9PHAE1.450e-7555.47DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:48275..51569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8081.XP_008415172.1
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size826
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.89e-10
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size822
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.1861656-UTR-P-littoralis_Contig672:48274..482781680791401.1861656-UTR-P-littoralis_Contig672:48274..48278Pylaiella littoralis U1_48UTRP-littoralis_Contig672 48275..48278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.1995394-CDS-P-littoralis_Contig672:48278..484071680791401.1995394-CDS-P-littoralis_Contig672:48278..48407Pylaiella littoralis U1_48CDSP-littoralis_Contig672 48279..48407 +
1680791401.2129333-CDS-P-littoralis_Contig672:49210..495841680791401.2129333-CDS-P-littoralis_Contig672:49210..49584Pylaiella littoralis U1_48CDSP-littoralis_Contig672 49211..49584 +
1680791401.226526-CDS-P-littoralis_Contig672:49814..499601680791401.226526-CDS-P-littoralis_Contig672:49814..49960Pylaiella littoralis U1_48CDSP-littoralis_Contig672 49815..49960 +
1680791401.239698-CDS-P-littoralis_Contig672:51396..515691680791401.239698-CDS-P-littoralis_Contig672:51396..51569Pylaiella littoralis U1_48CDSP-littoralis_Contig672 51397..51569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.11.3prot_P-littoralis_Contig672.11.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig672 48279..51569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig672.11.3

>prot_P-littoralis_Contig672.11.3 ID=prot_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MPSLDDFMDALDPDTGKFPLEDLTLTTFDMNVPVAAVKLLVDKQTNRYVN
LCTTEPKDGEPDLRKNHQKAKKRTCGYTTLGDPAFEDKHIYGMIGLTITW
GLTKKHRMRKHWSKTAEDNYPQVRECMPRDLSELLYCRFLHCSDGNAPPK
KLPTGEDNPEYDSKHHIRLLEEILNAAWAENVEVNQWLSYDEQMVKCVSK
FAAAIRRYMKDKPIPHGIKVWALCDIKGYCLISSVDGGIQGDPKLRRWFN
CPLGRTTRQVLWVVLGASPLLSAK
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mRNA from alignment at P-littoralis_Contig672:48275..51569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig672.11.3 ID=mRNA_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3295bp|location=Sequence derived from alignment at P-littoralis_Contig672:48275..51569+ (Pylaiella littoralis U1_48)
CAAGATGCCTTCGCTCGACGACTTCATGGATGCCCTTGACCCGGACACCG GCAAGTTTCCGCTGGAAGATCTGACGCTGACTACATTCGACATGAACGTT CCGGTCGCGGCGGTGAAGCTCTTGGTAGACAAGGTGGGTCTCATTTGTTT CAGTGTGTGTGTTTCGAGAATGAGGTCAACAACTAATTTTTTACCCCGCA CCACCCCTCCCCTCCCCCCCCCCTGCAATATTCTCATATTGTGAGAGAGA TGAATAGCGCAGGGAATAATAAGACCCATTCATACGTCATCAGTATAGTT TCGTATGTATTTTCGTTGTGGAGTTACCGGCATTTTTACAGAAACAGCAC GGACGAAAAGCAGCCGTGGACTATTAGGAAAAAAGGCAAAGACATGTGTT GCTAGCAGTGAAACAGTGACGGTCTTGATGTTTGTTGGGTAACGTGACGC TGCTGTTTTTATTCGTGTACTGTTACTGTATTGTTGATTTGTCTTTGTTT CGCGGATGGACGATCACCAACTGAAACCACCTGAAAAAGAGCGGTTGTGA CGGCTTCAGGTGGGGTGGCACATGTGTGTCACGACCACGGCACATCCGCT CACACACACAATCTGTTTTTTTATTATTACTACTATCTTCACACCCGACC ATCCCATCTGGATATTTTCGTCCAAAGTCCGCGCTCGCTCGGGAGGGGGT TCTCCGTCGAATATCGAGTCTAAAGAGCGACCACCACGACCGATTTCCTC TGCCACCACTTTTGATCAAATATACAACCGAGTTTGCATCCGTGAGCCTT TCTCCTTTTTTCACCTGTCGTCATGCCAGGGCAGTAGGTACACCCGCATT CATCCGCTACTTGCCCTGCCCCCCCTGTTGCCCACATTGTTTCCGAATGC CCGACGTTGTTGGCTTTGTTTTGCTTTTCGTGCCAGCAGACCAATCGATA CGTAAACTTGTGCACGACGGAGCCTAAGGACGGGGAACCCGACTTGAGGA AGAACCACCAGAAGGCGAAGAAGAGGACATGCGGCTACACGACGTTGGGT GACCCGGCGTTCGAGGACAAGCACATTTATGGTATGATCGGACTGACAAT TACCTGGGGCCTGACTAAGAAACATCGTATGAGGAAACACTGGAGTAAGA CAGCGGAAGACAACTACCCTCAAGTGCGCGAGTGCATGCCGCGCGATTTG AGCGAGCTGCTCTACTGTCGATTCCTTCACTGCTCGGATGGTAATGCGCC CCCAAAGAAGTTGCCAACCGGAGAGGACAACCCCGAGTACGACTCGAAAC ATCATATCAGGCGAGGACGACCATCAAATGCCCACATGCCAAGTAAATCC TGTAGGAATTTTTAAGCGGTGATGTTTATAGTCGAAATTATCCTCGCACG ATTCTGTGGCAGGCGTATACTGGGCTTCGTTGTCACTAAGTCTTGGCCGT AGGTCACGATCGATCGCACTCCCCTAAAATGGCTCAAATTTCAACTAATG TTTTATTTCCTTTCTCGCACTTTTACTCCTTGGCCGGCAGACTTCTCGAA GAGATTTTGAACGCGGCGTGGGCGGAGAACGTGGAAGTCAACCAGTGGCT CTCGTACGATGAACAAATGGTGAAGTGTGTGTCCAAGTTTGCTGCCGCCA TCAGGAGGTACATGAAGGACAAACCCATCCCTCATGGTGAGTGCTCCATC TCTACGATAGGGGGCGACGGGACTGCTGTTGTATCTATTCTTAGCGCCAG GACGGCGGTTGTTGATATTGAGCGACGGGACGGTAGTAAGTTATGATTTG GCGCATGCTTGTTGTTTTCAGGTCTCTTCATGATGACTCGTATGTCATGC TTAATAGAGGCATTGTGTGTTGTTTTGTATCTTCGTTGTTGACATCGTCG GACGTGTGATGTGATACTCGTATAATACTGCTCTATGATCAATACTGTTG TATGAGGATATCATATAATATGACCTTGTCTTGTTTTTCGTTGTTGGTAT GGTATGATGTGCTTCGAAGTATGATACCTGGTATATGATATGATGCTGAT TTATGAAGAATACAGTAATCCCCTCTGTTCCCCCCCCCCGGGTGGGATCT GTTTTTTTGTCTAAAATAAGCCCCCCGGGGGAAATTCGTGTCTAGGGAGT GATTTCTTTTTGTTTTCTACAACAATACCCCGGGGGGAAATGTCCACGGG GGGGCGGAGCCTATATTTTTACCGGTATTCACTCCCAGGGAAAAAGCGAA AAACAACTCCATGCACCTATCATGAAACGAAAACCGCCCTTTTACAAGTG TGCCGAATGATAGGAGCTTGTTGGCCGCAAGAACCGTCCCTTTTTTTCGC AGTGTTGCCAAAATCGCAGGAACAATCATCGCACAGAAAAATAACCCCGG GGGTAACACACAGAAAAAAACTTACCTCAGGGGGAATTCGTGTCTGAGGG ACGAACCTTTTTTTTTCGCATGAAACTGGCCCCCCGGGGGGAAATCTGAA GTTTAATGCTTTTCGGCCGAAAAGGGGATTGGGGGGGGGGGGCGCGTGCA CGAATGCCGCGGCGACGGCGGGGGTGGAATTCATATACTGGGGGGAAATA GAGAGGACTACGGTACTGCTGCTATATGATGATATCATGTATGACCTTGG TTTATTTTTTCGTTGACAACTGTTGTATGATATGATATCACACTTGCTGC TGTATGCTCAAAAATACTGCATGATAACATCATATAATATGACCTGGTTT TGTATTTACGTTGTTGATATGGTATGATATACTTCGGCATGATACGATAT GGTGCTGCTGTATGATTGTATCATAAAATATTACCTTGTTTTCCTTTTTC GTTGTTGATACTGTATGACATACGATATAATATAATATGATATGATATGA TACTGGATGATCGGTACTGCTGTATGACGACATCATCCAATTGGATTTTG CGACCTACTTCGAAACTTGTTACGACTGCTGTTCGATTTTCCATTTCTTC GTTTTTTACGTTACGACAAGCACATGTTTTTTTGCACGATGCGAAATTGC CGTACCCCCTCGCAATGACTGATCGTACCCTTGCTTCAATGGATTTTCTC GTTATCTTGTCCAAACAAACAGGTATCAAGGTGTGGGCGCTTTGTGACAT CAAGGGCTACTGCTTGATCAGCAGTGTCGACGGCGGGATCCAGGGGGACC CGAAGCTGCGCCGGTGGTTCAACTGCCCGCTTGGCCGCACCACGCGTCAG GTGCTTTGGGTCGTGTTGGGTGCATCCCCTCTGCTGAGCGCTAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig672:48275..51569+

>mRNA_P-littoralis_Contig672.11.3 ID=mRNA_P-littoralis_Contig672.11.3|Name=mRNA_P-littoralis_Contig672.11.3|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig672:48275..51569+ (Pylaiella littoralis U1_48)
ATGCCTTCGCTCGACGACTTCATGGATGCCCTTGACCCGGACACCGGCAA
GTTTCCGCTGGAAGATCTGACGCTGACTACATTCGACATGAACGTTCCGG
TCGCGGCGGTGAAGCTCTTGGTAGACAAGCAGACCAATCGATACGTAAAC
TTGTGCACGACGGAGCCTAAGGACGGGGAACCCGACTTGAGGAAGAACCA
CCAGAAGGCGAAGAAGAGGACATGCGGCTACACGACGTTGGGTGACCCGG
CGTTCGAGGACAAGCACATTTATGGTATGATCGGACTGACAATTACCTGG
GGCCTGACTAAGAAACATCGTATGAGGAAACACTGGAGTAAGACAGCGGA
AGACAACTACCCTCAAGTGCGCGAGTGCATGCCGCGCGATTTGAGCGAGC
TGCTCTACTGTCGATTCCTTCACTGCTCGGATGGTAATGCGCCCCCAAAG
AAGTTGCCAACCGGAGAGGACAACCCCGAGTACGACTCGAAACATCATAT
CAGACTTCTCGAAGAGATTTTGAACGCGGCGTGGGCGGAGAACGTGGAAG
TCAACCAGTGGCTCTCGTACGATGAACAAATGGTGAAGTGTGTGTCCAAG
TTTGCTGCCGCCATCAGGAGGTACATGAAGGACAAACCCATCCCTCATGG
TATCAAGGTGTGGGCGCTTTGTGACATCAAGGGCTACTGCTTGATCAGCA
GTGTCGACGGCGGGATCCAGGGGGACCCGAAGCTGCGCCGGTGGTTCAAC
TGCCCGCTTGGCCGCACCACGCGTCAGGTGCTTTGGGTCGTGTTGGGTGC
ATCCCCTCTGCTGAGCGCTAAA
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