mRNA_P-littoralis_Contig672.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig672.4.1
Unique NamemRNA_P-littoralis_Contig672.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig672.4.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.180e-21
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:   58 AIRCLCASL-------SGFP-AATGGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAV 315
            A+R +C++L       + FP    G   F+GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV
Sbjct:   65 ALRFVCSALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAV 158
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BLAST of mRNA_P-littoralis_Contig672.4.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.640e-16
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  106 GGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVV 318
            G   ++GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVV
Sbjct:   12 GSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVV 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig672.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE2.180e-2156.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE7.640e-1649.30Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig672contigP-littoralis_Contig672:41455..41772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size319
Hectar predicted targeting categorysignal anchor
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791401.0910177-CDS-P-littoralis_Contig672:41454..417721680791401.0910177-CDS-P-littoralis_Contig672:41454..41772Pylaiella littoralis U1_48CDSP-littoralis_Contig672 41455..41772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig672.4.1prot_P-littoralis_Contig672.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig672 41455..41772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig672.4.1

>prot_P-littoralis_Contig672.4.1 ID=prot_P-littoralis_Contig672.4.1|Name=mRNA_P-littoralis_Contig672.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
LFRRRGLRWRDLGRNVRASAIRCLCASLSGFPAATGGLFFLGDTGAVIHA
VSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTL
RNVAVV
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mRNA from alignment at P-littoralis_Contig672:41455..41772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig672.4.1 ID=mRNA_P-littoralis_Contig672.4.1|Name=mRNA_P-littoralis_Contig672.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig672:41455..41772+ (Pylaiella littoralis U1_48)
CTCTTCCGCAGACGGGGACTCCGGTGGCGTGATTTGGGGCGGAATGTTCG
CGCTTCAGCTATACGCTGCCTATGCGCCTCCCTCTCAGGTTTTCCAGCCG
CGACCGGGGGCCTCTTTTTTCTGGGAGACACGGGCGCGGTAATTCATGCC
GTTTCCAACGATGAACACGTCTATAATCGGCGTGCGCCGCGCCGCGGAGA
GACGCTTCTCATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTG
GGGATTTGGACCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTG
CGCAACGTAGCGGTCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig672:41455..41772+

>mRNA_P-littoralis_Contig672.4.1 ID=mRNA_P-littoralis_Contig672.4.1|Name=mRNA_P-littoralis_Contig672.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig672:41455..41772+ (Pylaiella littoralis U1_48)
CTCTTCCGCAGACGGGGACTCCGGTGGCGTGATTTGGGGCGGAATGTTCG
CGCTTCAGCTATACGCTGCCTATGCGCCTCCCTCTCAGGTTTTCCAGCCG
CGACCGGGGGCCTCTTTTTTCTGGGAGACACGGGCGCGGTAATTCATGCC
GTTTCCAACGATGAACACGTCTATAATCGGCGTGCGCCGCGCCGCGGAGA
GACGCTTCTCATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTG
GGGATTTGGACCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTG
CGCAACGTAGCGGTCGTC
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