mRNA_P-littoralis_Contig671.12.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: A0A6H5KRQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE) HSP 1 Score: 310 bits (793), Expect = 1.050e-95 Identity = 150/212 (70.75%), Postives = 170/212 (80.19%), Query Frame = 3
Query: 3 RMARSALWLPSANASEWSTGSTAPLIGTGAAPAGCVGEPIQYYGEA---DDQ----------AYCGVGASWPFQPGQVRSLVSSFKPDVVLANWAFVHQLWHTELEDFEVFLEQLGEQLDGMTGQDGHRPRHMFWLSSPFLVSEREPHCVLERGLQFTKAMRGLLEPRGWIEIDWVSMTRKWSLDILDGMHHTEPATRMLAYLLMHQICHGS 599
RMAR+ALWLP+A++S WSTG IG GA +GCVG PIQYYGEA DD+ YCGV + W +PGQVR+L FKPDVVLANWA VH+LWH L++F+ FL+QLG QLDGMT QDGHRPR+ FWLS+PFLVSEREPHCVLERGLQFTKA+RGLLEPRGWIEI+WVSMTRKW +DILDGMHH EPATRMLAYLLMH +CH S
Sbjct: 265 RMARTALWLPTADSSVWSTGGGEKKIGEGAKESGCVGGPIQYYGEARHQDDRDGSGSTATTNRYCGVESYWQVKPGQVRNL---FKPDVVLANWALVHRLWHHTLDEFQTFLKQLGRQLDGMTEQDGHRPRYTFWLSAPFLVSEREPHCVLERGLQFTKALRGLLEPRGWIEINWVSMTRKWGVDILDGMHHGEPATRMLAYLLMHHVCHAS 473
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: D7G564_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G564_ECTSI) HSP 1 Score: 189 bits (480), Expect = 6.110e-49 Identity = 86/161 (53.42%), Postives = 112/161 (69.57%), Query Frame = 3
Query: 111 GEPIQYYGEADDQAYCGVGASWPFQPGQVRSLVSSFKPDVVLANWAFVHQLWHTELE-DFEVFLEQLGEQLDGMTGQDGHRPRHMFWLSSPFLVSEREPHCVLERGLQFTKAMRGLLEPRGWIEIDWVSMTRKWSLDILDGMHHTEPATRMLAYLLMHQIC 590
G PI+Y YCG+ + +R + SF+PDVVLANW +H+LWH + + F E LG+ LD MT RPR +FWLSSPFLVSEREPHCVLER +QF +R +LEPRGWIE++W ++T+KW+LDI DGMHH + ATRMLA+LL+H++C
Sbjct: 445 GSPIKY-------RYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIARFFENLGKTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHRMC 598
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: A0A6H5JQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ9_9PHAE) HSP 1 Score: 176 bits (446), Expect = 3.390e-45 Identity = 86/181 (47.51%), Postives = 113/181 (62.43%), Query Frame = 3
Query: 111 GEPIQYYGEADDQAYCGVGASWPFQPGQVRSLVSSFKPDVVLANWAFVHQLW-HTELEDFEVFLEQLGEQLDGMTGQDGHRPRHMFWLSSPFLVSEREPHCVLERGLQFTKAMRGLLEPRGWIE--------------------IDWVSMTRKWSLDILDGMHHTEPATRMLAYLLMHQIC 590
G PI+Y YCG+ A + + +R + SF+PDVVLANWA +H+LW H + F E LG LD MT RPR +FW+SSPFLVSEREPHCVLER +QF +R +LEPRGWIE ++W ++T+KW++DI DGMHH + ATRMLA+LL+H++C
Sbjct: 292 GLPIKY-------RYCGLPALYDSKDDAIRDYILSFRPDVVLANWAMMHKLWRHGYGSEITPFFENLGRTLDKMTENGEFRPRFLFWMSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEASARLRVQWMNYDSCFFTFEVNWTTLTKKWAVDIQDGMHHLKHATRMLAHLLVHRMC 465
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: D7FTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.550e-38 Identity = 80/130 (61.54%), Postives = 94/130 (72.31%), Query Frame = 3
Query: 3 RMARSALWLPSANASEWSTGSTAPLIGTGAAPAGCVGEPIQYYGEADDQ-------------AYCGVGASWPFQPGQVRSLVSSFKPDVVLANWAFVHQLWHTELEDFEVFLEQLGEQLDGMTGQDGHRP 353
RMAR+ALWLP+A++S WSTG IG GA +GCVG PIQYYGEA Q YCGV + W +PGQVR+LV+SFKPDVVLANWA VH+LWH L++F+ FL+QLG QLDGMT QDGHRP
Sbjct: 529 RMARTALWLPTADSSVWSTGGGENKIGEGAKESGCVGGPIQYYGEARHQDEHDGSGSTATTNRYCGVESYWQVKPGQVRNLVTSFKPDVVLANWALVHRLWHHTLDEFQTFLKQLGRQLDGMTEQDGHRP 658
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: A0A6H5KGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ9_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.440e-29 Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 3
Query: 111 GEPIQYYGEADDQAYCGVGASWPFQPGQVRSLVSSFKPDVVLANWAFVHQLWHTELE-DFEVFLEQLGEQLDGMTGQDGHRPRHMFWLSSPFLVSEREPHCVLERGLQFTKAMRGLLEPRGWIE 479
G PI+Y YCG+ + +R + SF+PDVVLANW +H+LWH + + F E LG LD MT RPR +FWLSSPFLVSEREPHCVLER +QF +R +LEPRGWIE
Sbjct: 514 GSPIKY-------RYCGLSGFHYSKDYAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRALDKMTDNGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRSVLEPRGWIE 630
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Match: A0A7S2LU63_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LU63_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.900e-6 Identity = 36/130 (27.69%), Postives = 63/130 (48.46%), Query Frame = 3
Query: 210 SSFKPDVVLANWAFVHQLWHTELEDFEVFLEQLGEQLDGMTGQDGHRPRHMFWLSSPFLVSEREPHCVLERGLQFTKAMRGLLEPRGWIEIDWVSMTRKWSLDI---LDGMHHTEPATRMLAYLLMHQIC 590
++F ++VL H +WH ++ F G +LD G+ + ++++ + SEREPH V++R LQF+ L P+G+ I+ +T ++ D DG+H T P R + H +C
Sbjct: 739 TAFSRNIVLDTLKMPHVVWHDAVKVF-------GNKLDAY-GEINNETSEYYFVTGFYFSSEREPHVVVDRSLQFSNLAWKKLTPKGYKMINAFDVTAAFTYDSDAQNDGLHITGPPIRAILTKFFHHLC 860 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig671.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig671.12.1 >prot_P-littoralis_Contig671.12.1 ID=prot_P-littoralis_Contig671.12.1|Name=mRNA_P-littoralis_Contig671.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=200bp MARSALWLPSANASEWSTGSTAPLIGTGAAPAGCVGEPIQYYGEADDQAYback to top mRNA from alignment at P-littoralis_Contig671:73587..77664+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig671.12.1 ID=mRNA_P-littoralis_Contig671.12.1|Name=mRNA_P-littoralis_Contig671.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4078bp|location=Sequence derived from alignment at P-littoralis_Contig671:73587..77664+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig671:73587..77664+ >mRNA_P-littoralis_Contig671.12.1 ID=mRNA_P-littoralis_Contig671.12.1|Name=mRNA_P-littoralis_Contig671.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=600bp|location=Sequence derived from alignment at P-littoralis_Contig671:73587..77664+ (Pylaiella littoralis U1_48)back to top |