mRNA_P-littoralis_Contig671.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig671.8.1
Unique NamemRNA_P-littoralis_Contig671.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig671.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig671contigP-littoralis_Contig671:54457..55556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1100
Hectar predicted targeting categoryother localisation
Exons1
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791399.5821037-UTR-P-littoralis_Contig671:54456..544811680791399.5821037-UTR-P-littoralis_Contig671:54456..54481Pylaiella littoralis U1_48UTRP-littoralis_Contig671 54457..54481 +
1680791399.6163406-UTR-P-littoralis_Contig671:55057..555561680791399.6163406-UTR-P-littoralis_Contig671:55057..55556Pylaiella littoralis U1_48UTRP-littoralis_Contig671 55058..55556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791399.6062584-CDS-P-littoralis_Contig671:54481..550571680791399.6062584-CDS-P-littoralis_Contig671:54481..55057Pylaiella littoralis U1_48CDSP-littoralis_Contig671 54482..55057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig671.8.1prot_P-littoralis_Contig671.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig671 54482..55057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig671.8.1

>prot_P-littoralis_Contig671.8.1 ID=prot_P-littoralis_Contig671.8.1|Name=mRNA_P-littoralis_Contig671.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp
MSLVLWQNGLAPAIQCLQLSEQPVSSFREAVDRARRHEAASLVGAVSAIQ
FTHVPNRAAADQQQFHHRAPSGPAASGRTKNNRGASSNNRGASSNNRGSS
SHNHGSSSGALSPSAKRTTSRPPPPAGVNVEDHKRDGRPYCSYDGCKKPV
GHFVWECFQKANKGKKKAKTTTSAGSGSSKKPAHDNSGDDE*
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mRNA from alignment at P-littoralis_Contig671:54457..55556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig671.8.1 ID=mRNA_P-littoralis_Contig671.8.1|Name=mRNA_P-littoralis_Contig671.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-littoralis_Contig671:54457..55556+ (Pylaiella littoralis U1_48)
TCCAGGCACCACGCCCTGGACCGTCATGTCTCTTGTCTTGTGGCAAAATG
GTTTAGCTCCGGCAATCCAATGCTTACAACTGTCTGAACAGCCGGTCTCC
TCTTTCCGCGAGGCTGTCGACCGTGCTCGTCGTCACGAGGCAGCTAGCCT
CGTCGGTGCTGTCTCCGCCATACAATTTACACATGTGCCCAATCGTGCTG
CTGCTGATCAACAACAGTTCCACCACAGGGCTCCGAGCGGACCCGCCGCC
TCAGGGCGGACCAAGAACAACCGCGGTGCGTCGTCAAACAACCGCGGAGC
GTCGTCGAACAACCGCGGATCGTCGTCGCACAACCACGGATCGTCATCTG
GCGCCCTTTCTCCGTCCGCCAAGAGAACCACCAGTCGCCCGCCGCCTCCT
GCTGGAGTCAACGTCGAAGATCACAAGCGGGACGGACGACCGTACTGCAG
CTACGACGGCTGCAAGAAACCGGTAGGACACTTCGTCTGGGAGTGCTTCC
AGAAAGCCAACAAGGGCAAGAAAAAGGCCAAGACCACCACCTCCGCTGGC
TCGGGTTCTTCGAAGAAGCCCGCCCACGACAACAGCGGCGATGATGAGTG
ATGTTGCCCAGTTGCTGTAGCGCCTGTAGTAGTTGGGTTGTCTCCTGTGT
CCCCCAGGAAAGGCGTGAAGAGAAAAAAACCTCTCTCCACATCAGTAGCA
GTCGGTGCTACTGGTCTAGTCGTACCCCGTGTCGGTGTCCGTAATGGTCA
CTTTGTCGTTTCACGAGTTCGTGCCAGTTCTTGTGGTACAAAGAGAAAAC
TTTTAGGAAAGCGTGTCGGTGAAATTCGTGCTTCTTCCTCGAAAGTTGTC
AGTGGTGTTGGTTCATCTCCCGTGCGCAAGTCATGTAAACGGTTGTCTTC
TGTCGGTGATGTAGCCTCGCCTCCAAAACGCAAGTCATGCTTACGGAGGT
TGTCCCCCGGTGATGTCAACTCACCTTCCGCTCGAAAGTCAAACAAGCGA
GTATCCTTTGCAGGTAGAGGTACTCATGATTTATCTTCTGTGTTGGATGA
TAATAAAAACGATATGTGTGGTACAGTTCTTCGCTGGCGCACAAACCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig671:54457..55556+

>mRNA_P-littoralis_Contig671.8.1 ID=mRNA_P-littoralis_Contig671.8.1|Name=mRNA_P-littoralis_Contig671.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig671:54457..55556+ (Pylaiella littoralis U1_48)
ATGTCTCTTGTCTTGTGGCAAAATGGTTTAGCTCCGGCAATCCAATGCTT
ACAACTGTCTGAACAGCCGGTCTCCTCTTTCCGCGAGGCTGTCGACCGTG
CTCGTCGTCACGAGGCAGCTAGCCTCGTCGGTGCTGTCTCCGCCATACAA
TTTACACATGTGCCCAATCGTGCTGCTGCTGATCAACAACAGTTCCACCA
CAGGGCTCCGAGCGGACCCGCCGCCTCAGGGCGGACCAAGAACAACCGCG
GTGCGTCGTCAAACAACCGCGGAGCGTCGTCGAACAACCGCGGATCGTCG
TCGCACAACCACGGATCGTCATCTGGCGCCCTTTCTCCGTCCGCCAAGAG
AACCACCAGTCGCCCGCCGCCTCCTGCTGGAGTCAACGTCGAAGATCACA
AGCGGGACGGACGACCGTACTGCAGCTACGACGGCTGCAAGAAACCGGTA
GGACACTTCGTCTGGGAGTGCTTCCAGAAAGCCAACAAGGGCAAGAAAAA
GGCCAAGACCACCACCTCCGCTGGCTCGGGTTCTTCGAAGAAGCCCGCCC
ACGACAACAGCGGCGATGATGAGTGA
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