mRNA_P-littoralis_Contig670.1.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig670.1.6 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI) HSP 1 Score: 1031 bits (2667), Expect = 0.000e+0 Identity = 847/1805 (46.93%), Postives = 934/1805 (51.75%), Query Frame = 1
Query: 265 WGSNLSIQRRERAVVWASCLQKVQALRQGGSWQRPENG---------AAA------GSLADGG--SGSASLAGATALVXXXXXXXXXKLNDQLDILATLTYPNSSISPQDAGFMVSALCEAAPRCSCRLSARVAQFFVSLCAKQQKVAFLAWQLNIVLDFLVASLPPGTEQASSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRRDCARALAQLLYENGERLGTRFDDVLPPLLGLADSSAVDLDTKHAALDALANLSLKNWAGCTEPQRQAVCSSLTKNFVKHWRVFTPSSXXXXXXXXXXXXXXXXXXXXXXXXXLKVLASTTRGLACAINKSGVSPVIEPYLARVVHALNHLVQPAGEGERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLADPRARVRLQALTLLESIAVKDAKSLYQHWALFFSPCVPGFASGATAASG---------LSKEGAGSNNPV-LPAGLVSILENDDAPQVRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIATTSAGGSGVGIGERVESMMLHLHRSLVSCLAREKSPAVVAKLCACAGALIVEMPYAAAVSWEWSTTGDSRRTGGPGGRAG-----------------VEESLRVLLRALARLMVNVTAEPIARIAASQALTAAFSTKEPAAAIDSFLLSFRCAAATPSXXXXXXXXXWAGVRTTAPFPPSXXXXXXXXXXARRSS-SSMEAGLAGWSPLPLRPGSADDRGNRFVVGGARNSSAKQRLRPASSPLGKHEGSRVEKSTAGSCGEGGRSGXXXXXXXXXXXXXXXX------VSKPENARGSPHQMPPSLPR-TKLDE---------------AVVSTPHSTNSXXXXXXX---QSFVDLLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGVVGGGAXXXXXXXXXXXXXXXXXXXGPRKSTWDRVSALLLGCFADPDQNLRLHALKVLEALLLARAEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESVSPQQRPTQPRPEDEDDTATGRLREGQPGGAAPLQXXXXXXXXXEEGGRSWVEWRNGISGGTGAERDLGGDLWRDLVQKHLQRALEDPYHGVRAVACSCHACLLDSDWAAFSDRERDRCLDRVLAATKDRAAGVNILACRVIAGVMTMTGREGAAAWCREPQFLGRCAGRLQDMMEDPKATIRGQAMLAVGNLACSLHSIRSRRSPPLXXXXXXXXXSIQQHPVLRRSLAAPVCLGDLVTRPRLRALCNGALRLTATEPDHAAGSAVRALGYLAWGLDPEPNAGGSXXXXXXXXXXXXXXXXXXXRVSXXXXXXXXQ---SGADIIDAAPAAPAGGVPKERGRNVENGEKEAEGEGGEDRDLQNKTVLALAIRLAPETGTLALSGGGGTRGERGTGGRGAGRSSVG---DRRAEIAAAKCSTRSSRWVVELLHCPGDRSVRKRDASEDRRGVMGAGTDAFPSKVRVLHSNKHLKVRTHAAHALKTVPDVRAYGDQLSAILGGSLRGLRACRQRSIVADPTQMRYAGELEAALRSLLLHILLALVL---DDHTPAANEPARSDAGGRGGHTSATAALLGEHAENVLEVLSSPESDTALSPSGLFPYYRRGHRQIEEKIAAHFTLTAEMPQQQQXXXXXXXXXXXXXXXXXXXXQLECRSPLLPAAVVLAAAAEGLVHLFGRRDGDCGSDIVSNSGXXXXXXXXXXVDSVEXXXXXXXXXTQETEQLP------MVSKQTWTACVAEARRRRLRVAQLLAG 5424
WGS+LS QRRER VVWASCL+KVQALRQGGSWQR E+G AAA G LA GG SG + AG A +LN+QL ILA LTYPNSSISPQDAGFM+SALCEA PR S LSARVAQ F LCAKQQ+V+FLAWQLNIVLD VASLP + XXXXXXXXXXXXXXXX SG+RDC RALAQLLYENGERLGTRFDDV+PPLL LAD SA+DLDT+HAALDALANL LKNWAG E QRQA+CS LT+NFV HW ARVRLQAL LLES+A KDAKS+Y HWALFF+P VPG SG A G +S+ G GS PV LPAGLVSI+E+D APQV XXXXXXXXXXX GIGERVESMML LHRSLV CLA+EKSPAVVAKLC+C GALI EMPYA + + + VEESL LLR LARLMV+V AEP ARIAASQALTA FSTKEP AAIDSFLLSFRC+AA W G R T P PS ARR + ++ AG WSPLPLRPGSADDRGNRFV G ARN K XXXXXXXXXXX XXX S E R S QMPP LPR +D+ + S N SFVD LIALAGAPGQLRAEALGLLTRIGRSYPAHLSG +TW+RVSALLL CFADPDQNLRLHALKVLEALLLARAEQA XXXX AESVSP+Q+P E GG +WRDLVQKHLQRALEDPYHGVRAVACSCHA LL SDW AFSDRER+RCL RVLAAT+DRAAGVNILACRV+AGVMTM G+EGAAAWCR+P+FL RCA RLQ+MMED K P XXXXX Q P GDL+ RPRLR+LC+GALRLTATEPDHAAGSAVRALGYLAWGLDP+ GG V + ++AA AA G +ERG G E+ E G DRDLQ+K +LAL+ RLAP+ +G+R G GAG DRRAEIA AKC RS +VELLH P D VR+ ASE R G +GA A + R + + HLKVRTHAAHALK V D RAYGDQL +ILGG LRGL AC+ RS+VADPTQMRYAG+LE ALRSL+LHIL+ALV D +AALLGE+A+ +LEVLSSPESD ALSPS L PYYR R+ I ++ +P Q + SP L VLAA AEGL L G XXXXXXXXXX XXXXXXXXX + +VSKQTW ACVAEA RRRLRV +LL G
Sbjct: 50 WGSSLSTQRRERTVVWASCLRKVQALRQGGSWQRAESGGTPAGAGAGAAAVSPSDDGILAHGGRASGDRAGAGTAAFPARPEQLDGAELNEQLGILARLTYPNSSISPQDAGFMLSALCEAVPRSSRGLSARVAQLFELLCAKQQRVSFLAWQLNIVLDLFVASLPSAAAEVQ--------VAPXXXXXXXXXXXXXXXXRPPRPLSGQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEQQRQAICSCLTRNFVAHW------------------------------------------------------------------------------------------------------------------------------------------------ARVRLQALALLESMAAKDAKSMYPHWALFFAPYVPGAVSGGGACGGDAAAATPGEVSEGGGGSTRPVVLPAGLVSIMESDHAPQVSPLRKWMMLAXXXXXXXXXXX----------------------GIGERVESMMLRLHRSLVLCLAQEKSPAVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEESLGDLLRELARLMVDVAAEPSARIAASQALTAVFSTKEPIAAIDSFLLSFRCSAA--GGLPSSCRGSWGGSRATPP--PSSPASA-----ARRGNGANAVAGSGAWSPLPLRPGSADDRGNRFVGGVARNGGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVXXXXXGGLRASDREGVRAS-DQMPPPLPREATVDDDTAPAXXXXXXXXXXGLASASEGANGRGDGVDGGGSDSFVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSG---------------GCTARGTVAEKTTATTWERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQAAAAAEALPVAGEKSSGTAGXXXXA--------AESVSPKQKPRS-----------------------------------ETXXXXXXXXXXXXXXXXXXXXXXGGKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDRERERCLGRVLAATRDRAAGVNILACRVVAGVMTMAGQEGAAAWCRDPEFLHRCAARLQEMMEDTK--------------------------PXXXXXXXEGTRDCQVSPAAGTGAGT----GDLIPRPRLRSLCDGALRLTATEPDHAAGSAVRALGYLAWGLDPDNFGGGGDGWGGKDGVVKARERDNESAVPLLPVGGDEDDAVASGRTVEAAAAAAVGRPVQERGGE---GFGESGEEDGGDRDLQDKAILALSTRLAPD------------KGDRELGNYGAGXXXXXXXXDRRAEIAGAKC--RSEPLLVELLHRPWDCPVREGGASEGREGPVGARAHAVLREARAVLDDNHLKVRTHAAHALKAVLDARAYGDQLPSILGGCLRGLAACKSRSVVADPTQMRYAGDLEVALRSLVLHILIALVALGDDASXXXXXXXXXXXXXXXXXXXXPSAALLGEYADELLEVLSSPESDAALSPSELSPYYRPRPRRRRLPIEDFQSVARGIPHQ-DGRNQQDEMTSARFQLVEPQQRPGGPSPRLITEAVLAATAEGLTCLLGGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATELSSSLVSKQTWAACVAEAGRRRLRVDRLLGG 1564
BLAST of mRNA_P-littoralis_Contig670.1.6 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE) HSP 1 Score: 979 bits (2530), Expect = 1.740e-315 Identity = 873/1769 (49.35%), Postives = 961/1769 (54.32%), Query Frame = 1
Query: 625 VSLCAKQQKVAFLAWQLNIVLDFLVASLPPGTEQASSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRRDCARALAQLLYENGERLGTRFDDVLPPLLGLADSSAVDLDTKHAALDALANLSLKNWAGCTEPQRQAVCSSLTKNFVKHWRVFTPSSXXXXXXXXXXXXXXXXXXXXXXXXXLKVLASTTRGLACAINKSGVSPVIEPYLARVVHALNHLVQPAGEGERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLADPRARVRLQALTLLESIAVKDAKSLYQHWALFFSPCVPGFASGA---------TAASGLSKEGAGSNNPV-LPAGLVSILENDDAPQVRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIATTSAGGSGVGIGERVESMMLHLHRSLVSCLAREKSPAVVAKLCACAGALIVEMPYAAAVSWEWSTTGDSRRTGGPGGR-----------------AGVEESLRVLLRALARLMVNVTAEPIARIA---------------------------------------------ASQALTAAFSTKEPAAAIDSFLLSFRCAAATPSXXXXXXXXXWAGVRTTAPFPPSXXXXXXXXXXARRSS-SSMEAGLAGWSPLPLRPGSADDRGNRFVVGGARNSSAKQRLRPASSPLGKHEGSRVEKS----------------------TAGSCGEGGRSGXXXXXXXXXXXXXXXXVSKPENARGSPHQMPPSLPR-TKLDE-------------AVVSTP----HSTNSXXXXXXXQSFVDLLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGVVGGGAXXXXXXXXXXXXXXXXXXXGPRKSTWDRVSALLLGCFADPDQNLRLHALKVLEALLLARAEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESVSPQQRPTQPRPEDEDDTATGRLREGQPGGAAPLQXXXXXXXXXEEGGRSWVEW--RNGISGGTGAERDLGGD------LWRDLVQKHLQRALEDPYHGVRAVACSCHACLLDSDWAAFSDRERDRCLDRVLAATKDRAAGVNILACRVIAGVMTMTGREGAAAWCREPQFLGRCAGRLQDMMEDPKATIRGQAMLAVGNLACSLHSIRSRR-SPPLXXXXXXXXXSIQQHPVL-------RRSLAAPVC-----LGDLVTRPRLRALCNGALRLTATEPDHAAGSAVRALGYLAWGLDPEPNAGGSXXXXXXXXXXXXXXXXXXXRVSXXXXXXXXQSGADIIDAAP----AAPAGGVP-KERGRNVENGEKEAEGEGGEDRDLQNKTVLALAIRLAPET-GTLALSGGGGTRGERGTGGRGAGRSSVGDRRAEIAAAKCSTRSSRW--VVELLHCPGDRSVRKRDASEDRRGVMGAGTDAFPSKVRVLHSNKHLKVRTHAAHALKTVPDVRAYGDQLSAILGGSLRGLRACRQRSIVADPTQMRYAGELEAALRSLLLHILLALVL--DDHTPAANEPARSDAGGRGGHTSATAALLGEHAENVLE---------------VLSSPESDTALSPSGLFPYYRRGHRQIEEKIAA-HFTLTAEMPQQQQXXXXXXXXXXXXXXXXXXXXQLEC------RSPLLPAAVVLAAAAEGLVHLFGRRDGDCGSDIVSNSGXXXXXXXXXXVDSVEXXXXXXXXXTQE--TE-QLPMVSKQTWTACVAEARRRRLRVAQLLAG 5424
+ LCA QQ+V FLAWQLNIVLD VA LP + S +RDC RALAQLLYENGERLGTRFDDV+PPLL LAD SA+DLDT+HAALDALANL LKNWAG EPQRQ CS LT+NFV +WR F SSXXXXXXXXXXXXXXXXXXXXXX K+LAS TRGLACAI K+GVSPV+EPYLARVVHALNHLVQPAGEGER+ XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX L DPRARVRLQAL LLES+A KDAKS+Y HWALFF+PCVPG SG S PV LPAGLVSI+E+D APQVRAA XXXXXXXXXXXXXXXXXXXXXXXXXXX GIGERVESMML LHRSLV CLA+EKSPAVVAKLC+C GALI EMPYA + + + +GVEESL LLR LARLMV+V AEP ARIA +SQALTA FSTKEP AAIDSFLLSFRC+AA W G R T PPS ARR + ++ AG WSPLPLRPGSADDRGNRFV G ARN T G+ GGR+ S AR S QMPP LPR + +D+ A ++ P + SFVD LIALAGAPGQLRAEALGLLTRIGRSYPAHLSG +TW+RVSALLL CFADPDQNLRLHALKVLEALLLARAEQ XXXXXXXXXX XXXXX SVSP+Q P E A G L GA Q R G+ G +G +WRDLVQKHLQRALEDPYHGVRAVACSCHA LL SDW AFSD ERDRCL RVLAAT+DRAAGVNILACRV+AGVMTM G EGAAAWCR+P+FL RCA RLQ+MMED KA MLAVGNL+CSLH IRSRR S P XXXXXXXXX R +P GDL+ RPRLR+LC+GALRL ATEP+HAAGSAVRALGYLAWGLDPE GG+ S D+I P AA AG P +ERG + G E+ E G DRDLQ+K +L L+ RLAP+ G L L R G G G S GDRRAEIA AKC RW + L R V+ R A V+ S R + + HLKVRTHAAHALK V D RAYGDQL +ILGG LRGL AC+ RSIVAD TQMRYAG+LE ALRSL+LHIL+ALV DD + +A+ DA GG LLGE+A+ VLSSPESDTALSPS L PYYR ++ +F L A+ QQ +E SP L VLAA AEGL L G V + +E TE + SKQTW ACVAEA RRRLRV +LLAG
Sbjct: 19 LQLCANQQRVTFLAWQLNIVLDLFVACLPTADAEVQ---------VAPPRPPAPAEENLPPPLRPPRPLSFQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEPQRQMTCSCLTRNFVANWRAFASSSXXXXXXXXXXXXXXXXXXXXXXPGERKILASATRGLACAIGKAGVSPVLEPYLARVVHALNHLVQPAGEGERSGAATTAAATRGASGXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXPTRSSASAS--LVDPRARVRLQALALLESMAAKDAKSMYPHWALFFAPCVPGAVSGGGXXXXXXXXXXXXXXXXXXXXSTRPVVLPAGLVSIMESDLAPQVRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GIGERVESMMLRLHRSLVLCLAQEKSPAVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVEESLGDLLRELARLMVDVAAEPSARIAGASFFHDXXXXXXXXXNLLYFCLALLCSVLVQSWPLDRASYRSVSSSQALTAVFSTKEPVAAIDSFLLSFRCSAA--GGLPSSCGGSWGGSRAT---PPSSSPASA----ARRGNGANAVAGPGAWSPLPLRPGSADDRGNRFVGGVARNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGA-DVGGRA------------RGGLRASDRRGARAS-DQMPPPLPRESTVDDDTAPAAAXXXPAPAGLAAPSEGANDRGDDGDGGGGDSFVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSG---------------GCSARGAVAETTTATTWERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQXXXXXXXXXXXAEALSVAGENFSGTAGGXXXXXX-SVSPKQNPLS-----ETAAAAGGLSAEGVEGAGLSQGTPISNVAEXXXXXXXXXXXERRGVVGSSGTAAXXXXXXXXXXKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDPERDRCLGRVLAATRDRAAGVNILACRVVAGVMTMAGEEGAAAWCRDPEFLDRCAARLQEMMEDTKA------MLAVGNLSCSLHGIRSRRRSLPXXXXXXXXXXXXXXXXXXXXXXEGTRDCQVSPAAGTGAGTGDLLPRPRLRSLCDGALRLAATEPNHAAGSAVRALGYLAWGLDPENFGGGADGRGGKNGVVEARARDNESAASLLPVEGDE---VDVIAIGPTVEAAAMAGRRPVQERGGD---GFGESGEEDGGDRDLQDKAILTLSTRLAPDKKGDLEL---------RNCGAWGEGGSGGGDRRAEIAGAKC-----RWNCCIALGVVLSARGVQARAARAQWAPVL------MQSLGRAVLDDNHLKVRTHAAHALKAVLDARAYGDQLPSILGGCLRGLDACKNRSIVADSTQMRYAGDLEVALRSLVLHILIALVALGDDASSSASAGKPGDAADCGGXXXXXX-LLGEYADXXXXXXXXXXXXXXXXXXGVLSSPESDTALSPSELSPYYRPRXXXXXXRLPIENFQLMAQNIPQQDGRNQQDKGALGEEMTSASFQPMEPWQRPRGPSPRLITEAVLAATAEGLTCLLGXXXXXXXXXXXXXXXNGARGNGEEGVVAGSSGCGSRCGDGEEVATELSSSLASKQTWAACVAEAGRRRLRVDRLLAG 1692 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig670.1.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig670.1.6 >prot_P-littoralis_Contig670.1.6 ID=prot_P-littoralis_Contig670.1.6|Name=mRNA_P-littoralis_Contig670.1.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1827bp MPDERQPRRWVPGSGGRSSASPSNTRRFGPGSTETNKPQQQQKRWGSNLSback to top mRNA from alignment at P-littoralis_Contig670:6968..28372- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig670.1.6 ID=mRNA_P-littoralis_Contig670.1.6|Name=mRNA_P-littoralis_Contig670.1.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=21405bp|location=Sequence derived from alignment at P-littoralis_Contig670:6968..28372- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig670:6968..28372- >mRNA_P-littoralis_Contig670.1.6 ID=mRNA_P-littoralis_Contig670.1.6|Name=mRNA_P-littoralis_Contig670.1.6|organism=Pylaiella littoralis U1_48|type=CDS|length=5481bp|location=Sequence derived from alignment at P-littoralis_Contig670:6968..28372- (Pylaiella littoralis U1_48)back to top |