mRNA_P-littoralis_Contig670.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig670.10.1
Unique NamemRNA_P-littoralis_Contig670.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig670.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig670contigP-littoralis_Contig670:61616..63263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791398.1186197-CDS-P-littoralis_Contig670:61615..619751680791398.1186197-CDS-P-littoralis_Contig670:61615..61975Pylaiella littoralis U1_48CDSP-littoralis_Contig670 61616..61975 -
1680791398.1336863-CDS-P-littoralis_Contig670:63081..631351680791398.1336863-CDS-P-littoralis_Contig670:63081..63135Pylaiella littoralis U1_48CDSP-littoralis_Contig670 63082..63135 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791398.1435084-UTR-P-littoralis_Contig670:63135..632631680791398.1435084-UTR-P-littoralis_Contig670:63135..63263Pylaiella littoralis U1_48UTRP-littoralis_Contig670 63136..63263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig670.10.1prot_P-littoralis_Contig670.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig670 61616..63135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig670.10.1

>prot_P-littoralis_Contig670.10.1 ID=prot_P-littoralis_Contig670.10.1|Name=mRNA_P-littoralis_Contig670.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MMKRCQHPHPHPHRRHWLQSPRTAMDTPTTSNGVSAVASVASTTTGGGLP
QDQQQPQQQQQLGSSRSGGGSGAASGDSGSSSSSTKEKDHVVKRIFEYIE
DSVRVTAQDEKKKTHSMEATHDSVYDAKTRLDAAIASK
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mRNA from alignment at P-littoralis_Contig670:61616..63263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig670.10.1 ID=mRNA_P-littoralis_Contig670.10.1|Name=mRNA_P-littoralis_Contig670.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-littoralis_Contig670:61616..63263- (Pylaiella littoralis U1_48)
CACGGGGGTAGCTTGGGTAAACGAGAAAACGAAGGAGACGTGGGACGAGT
GGCACAGCGTCGAAGAAAACAACGACGAGGAGGAAGTGGCCTATTCCTTC
TGGAGGCTAGAGGAGGAGGAAAAGAAGGATGATGAAACGTTGTCAGCATC
CTCATCCTCATCCTCATCGTCGCCACTGGTTGCTGGACGTTTTACCAGAG
AAGACTCGCCGCCTTTCGATGGCGAGGTGCCGAGTGGAAACTTGGAGAAA
GTGTTTGCCGCCATGGTGAGTCAATTCAGTGTGTGACGCACGTATCCGAG
CCACCATCAAAATTCGGTGACTACGAGACTTATCGGATATCGGCCCCACA
AAATGGAAACACAAACATATCACACGCACACATCATACAATACACAGGCG
ACACATACATATTCGCAACACGGAGAATTAGCAAAACTTAGAGTGTACGG
CTGTTGAGGCTGTTTGATCATTTCAAGTGCGCCATCGTCACCAATTTAGA
GTCGCGACACATACAATGCTCGGAATCCCCAAAAACACACGTTCAGTCGA
CAAAGCATCACATCAAAGTATCGCACTTGTTTCCGCTGAACCTGCAGTTG
AACACCAGACATTTTCTGTATCGTGCTACATGTTATCTTGCGTCTCACAC
GTGTGTGCTGTGTGTGTGGTTGTCATCCCTTCTACTGTGGAGGTGCTAGT
CTACACCTTTAAGTGTACGTTGGGCGCACTGGCAGGCGTTACACAGGAGG
AACGTCAACACGCTTCAGGTCATTTTTCTCCACACGTTCCTTTTCTGCGG
TGCTTGCCCTCAAGTTCATCGCAAGAAGGGTTCGACCGTTTCTATCCCTT
TTCGACCTTTTCTAAAGAACGAATTGTGACTTCTCTCGAAGAAATCAAAC
CCTTCCCACGCCCAAGTATTGCGTGAGAAAAAATCCCGCTCTCCACCAGG
ATTCGAAGTCACCACGAGGTCCCCAAAACAATTACGACGACAGGCAGTAG
GTCCCTAGGTGCCAGAATGGTGTTGAAGTTGCATACATACCGCCGAAGCG
ACAGGTTACACGTGTGCATGGGACAAATCATACGAATATAGCGTTTATGG
CTTCGCACCGCGATATGATACTGAAGACACGTCGATTTTCATTCCCGTGT
GATGGACAAGTGGAAACAAGGCTTTTTTCTCGCTCCCTCGCCCTCCTCCG
CCCGCCGACGCTGTCTTCCTGATTCCTCTTTGTCACAACTCCCACCGCCC
ACCCCCCACCCCCCACCCCCGTATTCCTTCCTCCTCACCAGTCCCCCCGG
ACGGCCATGGACACCCCGACGACTAGCAACGGAGTATCAGCGGTAGCGTC
GGTGGCATCAACTACTACCGGCGGTGGTCTTCCACAGGATCAGCAACAGC
CGCAGCAACAGCAACAGCTGGGATCTTCTCGTTCGGGCGGCGGCAGTGGT
GCTGCTTCCGGCGACTCTGGCAGCTCCAGCAGCAGCACCAAGGAGAAGGA
CCACGTGGTGAAGCGAATCTTTGAGTATATCGAAGATTCGGTCCGCGTTA
CCGCCCAGGACGAGAAAAAGAAGACCCACTCTATGGAAGCGACGCACGAT
AGTGTCTATGACGCAAAGACAAGACTGGATGCGGCTATCGCATCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig670:61616..63263-

>mRNA_P-littoralis_Contig670.10.1 ID=mRNA_P-littoralis_Contig670.10.1|Name=mRNA_P-littoralis_Contig670.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig670:61616..63263- (Pylaiella littoralis U1_48)
ATGATGAAACGTTGTCAGCATCCTCATCCTCATCCTCATCGTCGCCACTG
GTTGCAGTCCCCCCGGACGGCCATGGACACCCCGACGACTAGCAACGGAG
TATCAGCGGTAGCGTCGGTGGCATCAACTACTACCGGCGGTGGTCTTCCA
CAGGATCAGCAACAGCCGCAGCAACAGCAACAGCTGGGATCTTCTCGTTC
GGGCGGCGGCAGTGGTGCTGCTTCCGGCGACTCTGGCAGCTCCAGCAGCA
GCACCAAGGAGAAGGACCACGTGGTGAAGCGAATCTTTGAGTATATCGAA
GATTCGGTCCGCGTTACCGCCCAGGACGAGAAAAAGAAGACCCACTCTAT
GGAAGCGACGCACGATAGTGTCTATGACGCAAAGACAAGACTGGATGCGG
CTATCGCATCCAAG
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