mRNA_P-littoralis_Contig670.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig670.9.1
Unique NamemRNA_P-littoralis_Contig670.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig670.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig670contigP-littoralis_Contig670:59830..60649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size426
Hectar predicted targeting categoryother localisation
Exons2
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791398.0580232-CDS-P-littoralis_Contig670:59829..600731680791398.0580232-CDS-P-littoralis_Contig670:59829..60073Pylaiella littoralis U1_48CDSP-littoralis_Contig670 59830..60073 -
1680791398.070638-CDS-P-littoralis_Contig670:60469..606331680791398.070638-CDS-P-littoralis_Contig670:60469..60633Pylaiella littoralis U1_48CDSP-littoralis_Contig670 60470..60633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791398.083819-UTR-P-littoralis_Contig670:60633..606491680791398.083819-UTR-P-littoralis_Contig670:60633..60649Pylaiella littoralis U1_48UTRP-littoralis_Contig670 60634..60649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig670.9.1prot_P-littoralis_Contig670.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig670 59830..60633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig670.9.1

>prot_P-littoralis_Contig670.9.1 ID=prot_P-littoralis_Contig670.9.1|Name=mRNA_P-littoralis_Contig670.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
MGPPQGLFVVFGSQEAGNRQENTDWKEEGRVTEGRSSGRNAGRRPWAKTK
KTLGRKTVAGKDATSAPMYSFPESSGSFDDRSSSSAVGNKKWRRGRHHHH
QPSHSSVKLYSFSIVGQGLMVISVDPDSFLFCVMWR
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mRNA from alignment at P-littoralis_Contig670:59830..60649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig670.9.1 ID=mRNA_P-littoralis_Contig670.9.1|Name=mRNA_P-littoralis_Contig670.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=820bp|location=Sequence derived from alignment at P-littoralis_Contig670:59830..60649- (Pylaiella littoralis U1_48)
GCCACAGGTATAATCGATGGGACCGCCGCAGGGGCTCTTTGTGGTATTCG
GGTCGCAGGAGGCGGGAAACCGGCAGGAGAACACGGATTGGAAGGAAGAG
GGACGAGTGACGGAGGGCAGGTCGTCGGGAAGAAACGCGGGCCGTCGGCC
ATGGGCAAAGACGAAGAAGACCCTCGGGAGGTGAGCGGTCATGCACAGTC
CCTTGAGAAAAAGCACGCGCTCTAGGAGGTTATCACATACCGTACGCTGG
AGGTTACACGGAATGCGCCGCTACTCTGCTTTATGTCTAGCAATCGGCTG
CACCGCGTTGTCGTACCATACAGCCTCTGGTGCATGCATAGATGTACTCA
CTGAAGATTACTCTCTTACTTTTCATCGGCTTTCCTGAATGAATTTCCTC
CGCGTGCTTCATTTGTTTTAGGTGCTGATTTCCGAGAGGGCGTCATGTTT
GTATGCCGTACCATACCACCGCCCGCCGCCTGTGCGTGCGTACTCTGCGT
GACTCCTTTCGCAACCTGCCAACTAGCCTCTCCCGCATCTCGAACCCTTC
CCCGCAATATCGATGTCGGTGAGCAGGAAGACCGTGGCCGGGAAGGACGC
AACAAGCGCGCCCATGTATAGCTTCCCGGAAAGCAGTGGGTCATTCGACG
ATCGATCCTCGTCATCAGCCGTTGGAAACAAAAAATGGAGAAGGGGACGT
CATCACCATCACCAACCGTCCCACAGTAGTGTAAAACTTTATTCCTTTTC
CATCGTTGGGCAAGGGTTGATGGTGATAAGTGTTGATCCTGATTCGTTCT
TATTTTGTGTGATGTGGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig670:59830..60649-

>mRNA_P-littoralis_Contig670.9.1 ID=mRNA_P-littoralis_Contig670.9.1|Name=mRNA_P-littoralis_Contig670.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig670:59830..60649- (Pylaiella littoralis U1_48)
ATGGGACCGCCGCAGGGGCTCTTTGTGGTATTCGGGTCGCAGGAGGCGGG
AAACCGGCAGGAGAACACGGATTGGAAGGAAGAGGGACGAGTGACGGAGG
GCAGGTCGTCGGGAAGAAACGCGGGCCGTCGGCCATGGGCAAAGACGAAG
AAGACCCTCGGGAGGAAGACCGTGGCCGGGAAGGACGCAACAAGCGCGCC
CATGTATAGCTTCCCGGAAAGCAGTGGGTCATTCGACGATCGATCCTCGT
CATCAGCCGTTGGAAACAAAAAATGGAGAAGGGGACGTCATCACCATCAC
CAACCGTCCCACAGTAGTGTAAAACTTTATTCCTTTTCCATCGTTGGGCA
AGGGTTGATGGTGATAAGTGTTGATCCTGATTCGTTCTTATTTTGTGTGA
TGTGGAGA
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