mRNA_P-littoralis_Contig117.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.63.1
Unique NamemRNA_P-littoralis_Contig117.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: D7FMJ5_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ5_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 2.490e-176
Identity = 283/411 (68.86%), Postives = 313/411 (76.16%), Query Frame = 2 
Query:  167 MWNSARRRVCALSGCNDTV*TDHRTGQEHDFCGRTHATLYEQQQ----HQMAAALRPAGTSRRVLPPDRASGGNKKLVSTSMLRPGAKRNQHKSNPKPSGPHTSAGY-HEYPRAANR------AVPPP-HQTLPITRHTSTAWQALRVTDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIRWEHPDLASRPQVQEAAAAMEVEYGLTPSIAPFAPPAGAAMTAGSLGAYDMTALQTQLHCPDMAFQRAHVTAPPTLGGPAPEV-VSVTSVPPAQQSTADAYAKTPGKN 1360
            MW+S RR VCALS CN+ V  D  TGQEHDFCGRTHATL++QQQ    HQ AA  RP          DR      KLV T++LR GA RN+HKSNP+PSG HTSAGY H +P AA        A+PP   QTLPIT HT    QALRVTDT+VLFW PPCVFTQWEPA F+VDG+++C AEQYMMA KA +F DTDI + IMSTSDPAQQKRLG+EVANYD G+W++ KVQ VL GNY+KFTQNP MCDQLLATGDKMLAEAS +DKVWGIGM+AFDP VERHECW GQNLLGKILMYVRNKIRWE PDLASR QVQEAAAAME E+ L PS   F   AG AMTA SLGA +MTALQTQLHCPDM   RA VTAPPTLG PAPEV ++V +V   QQ+ AD  AKTP KN
Sbjct:    1 MWSS-RRPVCALSACNEAVYQDPVTGQEHDFCGRTHATLFKQQQQQLQHQKAATFRP----------DRY-----KLVPTAVLRSGAVRNKHKSNPRPSGSHTSAGYNHGHPTAAAANGVVVVALPPSAQQTLPITHHTPKVPQALRVTDTMVLFWNPPCVFTQWEPALFEVDGVKYCSAEQYMMACKANVFGDTDIWNKIMSTSDPAQQKRLGKEVANYDHGIWNLCKVQFVLTGNYSKFTQNPGMCDQLLATGDKMLAEASQHDKVWGIGMDAFDPNVERHECWRGQNLLGKILMYVRNKIRWERPDLASRRQVQEAAAAMEAEHRLIPSNGRFVSAAGPAMTADSLGALNMTALQTQLHCPDMGL-RAPVTAPPTLGEPAPEVFIAVAAV---QQNKADTDAKTPSKN 391
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: A0A6H5JWH6_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH6_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 5.310e-100
Identity = 173/268 (64.55%), Postives = 196/268 (73.13%), Query Frame = 2 
Query:  167 MWNSARRRVCALSGCNDTV*TDHRTGQEHDFCGRTHATLYEQQQ----HQMAAALRPAGTSRRVLPPDRASGGNKKLVSTSMLRPGAKRNQHKSNPKPSGPHTSAGY-HEYPRAANR------AVPPP-HQTLPITRHTSTAWQALRVTDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKV 934
            MW   R RVCALS CN+ V  D RTGQEHDFCGRTHATL++QQQ    HQ AA LRP          DR       LV+T++L  GA RNQHKSN +PSG HTSAGY H +P AA        A+PP   Q LPI +HT    QALRVTDT+VLFW PPCVFTQWEPA F+VDG+++C AEQYMMA KA +F DT+I   IMSTSDPAQQKRLG+EVANYD G+W++ KVQ VL GNY+KFTQNP MCDQLLATGDKMLAEAS +DKV
Sbjct:    1 MWGF-RHRVCALSTCNEAVYKDPRTGQEHDFCGRTHATLFKQQQQQLQHQKAATLRP----------DRYM-----LVTTAVLPSGAGRNQHKSNRRPSGTHTSAGYNHGHPTAAAANGVGTVALPPATQQKLPINQHTPKVPQALRVTDTMVLFWNPPCVFTQWEPALFEVDGVKYCSAEQYMMACKANVFGDTNIWKKIMSTSDPAQQKRLGKEVANYDHGIWNLCKVQFVLTGNYSKFTQNPGMCDQLLATGDKMLAEASQHDKV 252
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.060e-49
Identity = 81/156 (51.92%), Postives = 107/156 (68.59%), Query Frame = 2 
Query:  572 VTDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKI 1039
            V+  ++ FW+PP VF+QW P+ F VD +++ CAEQYMMA KA +F D      IM+T  P + K LG+ V+ YD  +WD HK+++V RGNYAKFTQN  M  +LL TG+K+LAEASP D+VWGIG+ A +P       W GQNLLG IL  VR ++
Sbjct:   56 VSPDLLFFWQPPSVFSQWTPSVFVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQNVWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSSWRGQNLLGDILQEVRTRM 211
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 170 bits (430), Expect = 3.790e-47
Identity = 78/156 (50.00%), Postives = 110/156 (70.51%), Query Frame = 2 
Query:  575 TDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIR 1042
            T+T+VLFW+PP VF QW  + F VDG+ + CAEQ+MMA KA +F D   R+ I++T  P Q K LG+EVA +   +W+   +++V+RGN AKF Q+P++   LLATGDK+L EASP D++WG+G+ A DP +     W G+NLLG+ LM VR ++R
Sbjct:   14 TETMVLFWQPPGVFGQWTSSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTSRWRGKNLLGEALMRVRAELR 169
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT)

HSP 1 Score: 168 bits (425), Expect = 2.260e-46
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 2 
Query:  575 TDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKI 1039
            T+T+VLFW+PP VF QW P+ F VDG+ + CAEQ+MMA KA +F D   R+ I++   P   K LG++VA +   +WD   + +V+RGN AKF QNP+M   LLATG K+L EASP D++WG+G+ A DP +     W G+NLLG+ LM VR ++
Sbjct:   14 TETMVLFWQPPAVFGQWTPSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDPRIHDPNQWRGKNLLGEALMRVRAEL 168
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: A0A836CP42_9STRA (NADAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP42_9STRA)

HSP 1 Score: 166 bits (420), Expect = 9.860e-46
Identity = 75/152 (49.34%), Postives = 104/152 (68.42%), Query Frame = 2 
Query:  584 VVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKI 1039
            +VLFW+PP    QW P+ F++ G+ + CAEQ+MMA KA +F   D+ + I++T+DP Q KRLG+ V N++  LW+ H +QVV+ GNYAKFTQN  +  +L+ TG ++L EASP+D+VWGIG+ A DP       W G N LG+ LM VR  I
Sbjct:    1 MVLFWQPPGFLVQWTPSPFQIAGVAYSCAEQWMMACKARLFNARDVLAQILATADPEQHKRLGRAVPNFNSELWERHSLQVVIHGNYAKFTQNAALRRELVDTGSRLLVEASPHDRVWGIGLAANDPKALDERRWRGTNKLGQALMVVRQLI 152
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: F0IFL7_9FLAO (NADAR domain-containing protein n=1 Tax=Capnocytophaga sp. oral taxon 338 str. F0234 TaxID=888059 RepID=F0IFL7_9FLAO)

HSP 1 Score: 169 bits (427), Expect = 2.580e-45
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 2 
Query:  587 VLFWEPPC------VFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIR 1042
            V FW+P C       F+QW+P+ F +DG E+ C EQYMMA KA +F D ++  +IM+TSDP   K LG++V N+D  +WD  K  +VL GNY KFTQN EM D LL+TGDK+L EASP D +WGIG++  +   +    W G+NLLG  LM VR++IR
Sbjct:  116 VFFWKPNCKVVDESCFSQWQPSSFCIDGDEYSCTEQYMMAEKARLFGDKEVEEEIMNTSDPKLMKALGRKVRNFDPQVWDKAKYSIVLNGNYYKFTQNKEMMDFLLSTGDKILVEASPMDTIWGIGLSKDNEKSQNIAAWRGKNLLGFALMEVRDEIR 273
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: D7G659_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G659_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 9.410e-45
Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 2 
Query:  566 LRVTDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIRWEHPD 1057
            +R T+ +VLFW+ P  F QW P  F++DG  +C AEQ+MMA KA +F D      IM+T+DP +QK LG++V  +D  +WD     VV+RGN AKF QNP   D+LLATGD++LAEASP D  WGIG++A D        W G+N LG+ LM VR+++R E  D
Sbjct:   53 VRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAMWDKKGYDVVVRGNLAKFKQNPGFRDELLATGDRILAEASPYDSEWGIGLHANDADALIQARWPGRNKLGEALMDVRSQLRNEAYD 216
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: A0A6H5L2E7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.390e-44
Identity = 81/164 (49.39%), Postives = 107/164 (65.24%), Query Frame = 2 
Query:  566 LRVTDTVVLFWEPPCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIRWEHPD 1057
            +R T+ +VLFW+ P  F QW P  F++DG  +C AEQ+MMA KA +F D      IM+T+DP +QK LG++V  +D  +WD     VV+RGN AKF QNP   D+LLATGD++LAEASP D  WGIG+ A D        W G+N LG+ LM VR+++R E  D
Sbjct:   52 VRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAVWDKTGYDVVVRGNLAKFRQNPGFRDELLATGDRILAEASPYDSEWGIGLKANDADALIQARWPGRNKLGEALMDVRSQLRDEAYD 215
[Close]
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Match: A0A2S0L992_9FLAO (DUF1768 domain-containing protein n=2 Tax=Capnocytophaga sp. oral taxon 878 TaxID=1316596 RepID=A0A2S0L992_9FLAO)

HSP 1 Score: 166 bits (419), Expect = 2.880e-44
Identity = 80/158 (50.63%), Postives = 104/158 (65.82%), Query Frame = 2 
Query:  587 VLFWEPPC------VFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPAQQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKMLAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIR 1042
            + FW+P           QW+P+ F VDG ++ CAEQYMMA KA +F D ++R +IM+TSDP   K LG++V N+D  +WD  K  +VL GNY KFTQN EM D LL+TGDK+L EASP D +WGIG+   +   +    W GQNLLG  LM VR++IR
Sbjct:  107 IFFWKPNANVIDESCLGQWQPSPFSVDGDKYSCAEQYMMAEKARLFEDEEVREEIMNTSDPKMMKALGRKVRNFDPQVWDKAKYSIVLNGNYYKFTQNKEMMDFLLSTGDKILVEASPVDAIWGIGLGKENEKAKNVAMWRGQNLLGFALMEVRDEIR 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMJ5_ECTSI2.490e-17668.86NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JWH6_9PHAE5.310e-10064.55NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FYJ3_ECTSI1.060e-4951.92NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001CCB45E43.790e-4750.00NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
A0A1I2I2Z7_9DELT2.260e-4649.68NADAR domain-containing protein n=2 Tax=Nannocysti... [more]
A0A836CP42_9STRA9.860e-4649.34NADAR domain-containing protein n=1 Tax=Tribonema ... [more]
F0IFL7_9FLAO2.580e-4550.63NADAR domain-containing protein n=1 Tax=Capnocytop... [more]
D7G659_ECTSI9.410e-4549.39NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L2E7_9PHAE1.390e-4449.39NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2S0L992_9FLAO2.880e-4450.63DUF1768 domain-containing protein n=2 Tax=Capnocyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:221811..232258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMJ5
PFAMsDUF1768
Model size1414
Max annot lvl2759|Eukaryota
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.04e-156
EggNOG OGsCOG3236@1|root,2S4FY@2759|Eukaryota
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-23_000540.1
DescriptionDomain of unknown function (DUF1768)
Cds size1059
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789488.3532276-UTR-P-littoralis_Contig117:221810..2218611680789488.3532276-UTR-P-littoralis_Contig117:221810..221861Pylaiella littoralis U1_48UTRP-littoralis_Contig117 221811..221861 -
1680789488.4074764-UTR-P-littoralis_Contig117:231954..2322581680789488.4074764-UTR-P-littoralis_Contig117:231954..232258Pylaiella littoralis U1_48UTRP-littoralis_Contig117 231955..232258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789488.3651652-CDS-P-littoralis_Contig117:221861..2223231680789488.3651652-CDS-P-littoralis_Contig117:221861..222323Pylaiella littoralis U1_48CDSP-littoralis_Contig117 221862..222323 -
1680789488.3803165-CDS-P-littoralis_Contig117:223343..2235921680789488.3803165-CDS-P-littoralis_Contig117:223343..223592Pylaiella littoralis U1_48CDSP-littoralis_Contig117 223344..223592 -
1680789488.3973658-CDS-P-littoralis_Contig117:231606..2319541680789488.3973658-CDS-P-littoralis_Contig117:231606..231954Pylaiella littoralis U1_48CDSP-littoralis_Contig117 231607..231954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.63.1prot_P-littoralis_Contig117.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 221862..231954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.63.1

>prot_P-littoralis_Contig117.63.1 ID=prot_P-littoralis_Contig117.63.1|Name=mRNA_P-littoralis_Contig117.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=353bp
MAAALRPAGTSRRVLPPDRASGGNKKLVSTSMLRPGAKRNQHKSNPKPSG
PHTSAGYHEYPRAANRAVPPPHQTLPITRHTSTAWQALRVTDTVVLFWEP
PCVFTQWEPAYFKVDGIEFCCAEQYMMAYKAYIFCDTDIRSDIMSTSDPA
QQKRLGQEVANYDGGLWDMHKVQVVLRGNYAKFTQNPEMCDQLLATGDKM
LAEASPNDKVWGIGMNAFDPGVERHECWGGQNLLGKILMYVRNKIRWEHP
DLASRPQVQEAAAAMEVEYGLTPSIAPFAPPAGAAMTAGSLGAYDMTALQ
TQLHCPDMAFQRAHVTAPPTLGGPAPEVVSVTSVPPAQQSTADAYAKTPG
KN*
back to top

mRNA from alignment at P-littoralis_Contig117:221811..232258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.63.1 ID=mRNA_P-littoralis_Contig117.63.1|Name=mRNA_P-littoralis_Contig117.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10448bp|location=Sequence derived from alignment at P-littoralis_Contig117:221811..232258- (Pylaiella littoralis U1_48)
GTCCAATGAAAGTGATGACAACACACACACACACACACACACATACCTCA
CGCGTCACAGAGTGTAAAAGTAGCACGCGCGAAGTTCGGGTCTCGAACGC
GAGGAAAATAAATACAGGGTGAGTGTTGAACAGAAACGGCGACGAGATAC
TGGCAGAGCGTGGACCATGTGGAACTCAGCTCGTCGCCGTGTGTGCGCGC
TGTCGGGGTGCAACGACACCGTGTAGACGGATCACCGCACCGGCCAGGAA
CACGACTTCTGCGGAAGGACGCACGCCACTTTGTACGAACAGCAGCAGCA
CCAGATGGCAGCGGCCCTGAGGCCGGCGGGAACATCACGACGTGTTCTCC
CGCCGGACCGAGCCAGCGGAGGAAACAAAAAGTTGGTGTCCACGTCCATG
CTTCGACCGGGCGCCAAGAGGAACCAGCACAAAAGCAACCCCAAGCCAAG
CGGGCCGCACACCTCTGCTGGGTATCACGAATACCCTCGCGCTGCCAATA
GAGCGGTTCCACCCCCGCACCAGACGCTTCCCATCACCCGCCACACCTCG
ACAGCGTGGCAAGCGTTGAGGGTAACTGATACAGTGGTATTGTTCTGGGA
GCCCCCGTGTGTGTTCACGCAGTGGGAACCGGCCTACTTCAAGGTTGACG
GGGTGAGTTCAGTAGACGCAGAGCAGAGTATCGACAAATCAATTTTGGCC
GGATCTTCACGTTTGTACAATGTGGGGCAGAAACAACTGGGTACGGTTGT
GCCAGTAGCAGGAGGCATGAGTGAGGAGAGCAAGCGTGAACAGGCAGACC
TCGTGGCAAGACATGTTTCCGATTGATTGCATGCCTTTATTTCATTTTTT
GAACCGGTCGCCCCGGTGGTTCAGTTGGTTATCCACGCAACCTTCTGACA
TTCACTCGTGAGTTCGAATCCCAGTGCAGTAACACGATCTGGGGCTTTTT
CTCACATTGCGCGTGAAAGTGGAAAGCGATCAATTCGTGAGTAAACAAAA
TTCGATCGTACCATCGACGAGGGAAAGGGATTGCTGTCCCCTTTCTCGCG
ATAAAAACTCAACCAAAACAAGGATAGCACCGCAGAGGGAAGTGGAGAAA
AAAAAAAAGAAAAGAAAAAAAAACTCCTGTACAGTAGCGGCTACGGTTTA
AGAGAGGGTCGGGACAACCCAGTGTTATTCTCTTAAATCGTGCTTTCTGT
TATATCGTTTTGGCTACGGTATAACAGAGTATTCTCTTAAACGGTAGCTC
ACTTTAAGAGAATATTCTCTTATACCGTAGCCAAAACTGAAGGTCGTGAA
ACAGGGACTCTCACGTCCCAGCTAGACTAGTAATGCCTAAAATGGTCATG
AAGAGAGCGTATCATTAATGTTACATTGCGCAGCTAGCGTCAGAGCACCT
TCGGTTCGCTCCACACGCCGCTTCATCTGTCGGATGGCGAGCACTTCAAG
ACCGAAGTACGTGGTACACTGCTGTACCTTTGTAGTGCGACACACTAGTG
CGCGTGGATACTGTACACATATCTATACATATTTCGTTTTGTCAGTAATA
GGTTTGCCGCATACTCGCACCTCTTCTAGAGAACTGCAACACGGGACCAA
GGATGCACCAGGCTGCTAGAAAAAAAACACCCTCTCACCCACTGAATACC
CCTCCCATCCCTTGCACCCAACGCCCAACACCCACAACCCTACATCATCC
CACCAACATATGAACCCACGAAGCAACAAGCGCTTCTTATGTATATCGCA
CGCGCTGCAAAGCAACGTAAGCGAAGAAAATCAATGCAACCCTCTCCGCC
TGTCAGCCTCTGCTGCAACCGTTACAGATAGTCTCGAATACACGTCTGCT
TGGTTGCCCTCGACCCGTGTGCACTCATCCAAGCTAGCTTAGCCTTACGG
AGGTGATAACCCGTTTCTGACATGCCGCACTGCTCGACAATATCCTCGAG
AGAACAAAAGTGTTCTGCTACCTGCGCGTACGGCGGCGGCGCCGGGGGCG
CTGCCGCCGAGGACTGTCCTGCTTCCCCTAGCTCAATCTCGTCGACGTCT
TCGTCCGAATTCATCTCTACTACGTGCTCATCACAAAGGTCTTGGACCAT
GTCTGCTACGATCGCCTCCACCGACACCCGCTTGCGTTTCGCTGAGCCGC
CGGGCTTCTTCGCGACATGCTGGCCAAGTTTCACGCCACTACTTGCACCC
GCGGGGCTCTTGCCTCTGCCCCCCGGGGAGTCGCGCTTCTCTGTCTGCGT
CCCAGCAGTCCCCGCACCTGCCTGCGTCCCAGCAGTCCCCGCGCCGGAAG
TCTCGCGCTCGCGGGAGGTAGCGCAGGCGTGGCAAATGCGGTGCATCTCG
CTGGTGCCGCGCGGGTCCGGCAAACCACAGTTGCCATGGAGGTACTGCCC
GCAGACACCTCTGCATTGGTGATTTGTGAACTGCGGCGGGCCTGGCGTGT
GATCGGGGACGTTACAGCGACTACCCGCTGCGCAGGGCATGGTGTCGGCA
GCTGCTGTGTGTGTGGTCTATGTGTTGATGGCTATGTGACGTGGCCTCCA
GAAGCTCGATTTAAGAGAAAATCTCAGAAATATGCTACATTTTCTCTTAA
ATCGATTTTGGGCGTGCCAAGCCGTTTTACTCTCTTATATCGGTACTTTC
TCTTAAACATTTTCCGTTAAACCGTAGCCGCTACTGTATTGACTTCCCCC
TGTGTGACCCCGGTTGGAGCGTCTACCTACCCGAAAGGTGTAGAGTGGCG
TCCAATCAAAGGGATGACAACACACACACACACACACACACACACACACA
CCTCCCCCCCGCCCCCCGACTTCCGGTACTTCCGGTCTTCTTTTCCCTTT
TCGTTCCCGTGCTTCCTCTTTGTTTGGCGGCCTGTTTGTTGTGTTTGTCT
ACGAATGAATGCACTCCCTCACTCTTCGTGCCCTCCCTGTATCTTCTTTT
TATTTCATTCTTTGTCTTTCGTCTATTGATCGTATAGTTACTGGACCATC
AGAGTGGAGCCTACGTAATTTTTTTGGACTCGAACATCGAACGTCGAACA
AGAGGATAGTTCGATGTTCGACTTTTTGGGTCCTTCGTAATTTCGGAAAA
GGCGAGTAAAAAAATCCCACAGGCACAATTACACATACGCAAGTGCTCCC
CAATAGACCTGGCTGTCATATATATCGGTATATCGGTACGCAGCTGCTGC
TGCTGCTGCTGCTACGGCAGCTGTGTGGTTGCGACAGGAAGCCACGCCCG
TGTGATTGCGTCTCACTTGGCCCCGCTTGCGCACGCGGGGCCCTGAGATC
AGTCGAAACCTCGCTGTCGCTCGGCATAGACACTTGTTTTGCGGCTATGC
TCTGCGGTCGTCTCTCTCTCGGTCGCCCGGTCGCCCTCTCTCTCTTGTCC
TGAGAGGGAGCGATAGACGCGGGTCTTCTTTTTTTGTCACCAATTAATTT
ATGTCGTCAATAGCCCGCGGGACTGTAGGTTCGATGTTGGGTTTTCGAGT
TTTTGTGAAAGATGTTAGAGTTTTATGCGGAATCACCCCTGGAAGATCCG
GCGTAGAAAAACTCGAACACCCTAACATCTTTTGTTTCATTTTATTTTCA
CGGCCAATCACATGATTACGCCGCTTGTTCGATGTTCAATGTTCGAGTCC
GAAAAAATTACGTAGGCCCCACCCTCATCCTGGTTTGCGTTTGCCTTGGT
CTGTCATGGCCCTGGGCCCTGGTTCGATGTACGAAGTACTTCGAAGTTGT
TTCATCACATTAGCTCTTTTCTAGTATCTAGCGCCCGCGGTCACACCAAA
TGCTGGAGCCATAGGAAGATCCGAAGAACACAGAAATCAAACAGAAGAGC
GCCTACGCACGTCGAAGGAAGGCACTTCTTTGGACGTATTGTCCCTGTGT
CCAGACTACTGAACTACGCACCACGGACAATCCTTCGGCTACAGCAGTCA
CCCCCGATCCCAATCCCTCCTCCAACCAACTCTCGGCTGCTGGCTACAGT
AGAACCTACTGTCTGGAGTGCTGCCCGCACCGTACCACGTACGGTAGTCA
AGTGGAGAGAACAGCATCGAAGACACATGCGCTGTCTGAAGTGCTGCCAA
ATATTATCCCGTCTAGGTGTGCAGTAAAAGAGGGACAAAACCAAAGCCAT
CACACAACGACGCTAAGTCCCTTCCCCTATATATCTATGTGTGGGTACAT
TGTGATTACGATACCAGTAGTTGGAGAGAGTGGCTCGTTCCCCGGGAGGA
TTTTCAACGGCACTCGCACTCCCCAAGGACGTACGTATAGGCAATTCTGC
CGCATCTCTCTACAAAACCAATGACGTCATCCCAACAACCTCTCTCTCAT
GAAAATACAGGGAAAAAGGAAAAAAATCGAAGTCCGGTGTGGCTACGTTT
TGCGGTCTATGTCGTCTCGTGCTTTGGCGTTGCCGATGGCCAACCCCTAG
CACCGCTACTCTCGAGTCGCGCCAGTGTCCATGCTCTCGTTGTCGTCCCT
CCCCAGTCGATTCCTCGCTCTCTCCCTCGTTGCACTAGGGGTACTGATCT
TGAAATTTCTCGCGAGGTGAAGGGTCGATCAGCCCTGATACCTCTCGTCG
CTGCTCCTCCTCCCACATGAAGTATATGGTTATGGTTGAGATTTGTCTTG
GTTATTTTTTGTTTGTCGGACTGTTTCCAATTTTCGTTCTTCTTTCGAGC
CTGTTATTTTTTTCTGTATTTGTTTGGTATTCTGGCCACCACAGATGGTA
CCCCAACGGAACCTTATCTGATTTGACTGTGGGTGATCATAGTCCATATA
TTTTATTTTTATTTTTTTCCTCCTAGCACGATATATATGTGCCTGGTTTG
TGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAA
CAACAACCATCTGCTTGTTGCCCTGACTGCATGTCCGCCGGTCAAAACTC
TTATCGCTGTGTGTGTACTTCATCCCCATCTATTTTGAATGCAATGTGCC
ACCTTTCTTTCGTTCAGTCGGCTAATAACCCGGGGTGAGACCACTTATTG
TAGCTGAAAAAAATCTCCTTAGAATCCGCCTTTTTCAATAAGAAGAATTC
CAACAGGATCTTCGAAAAGCACCACTTCTTATAACAGCGATTGATTTTAT
TTTTTCCGTGGGGGACTCATTTTTTTTTTACAGACAGACGGTGTTGACAT
CGTTTCAACAGGCTGCTGCTGCTGCTGTAACGTATTTGTTGATTACTTTC
GGATGAATGAAGCCACAGCGATATCAAAGCCATGTCCCGTAAGCTGTGTA
TATGGTCGTGCATCTCCGATTGTCCTTTGAGGCCGCGAGGCATCAACAGG
CTCACAAAAAAAGAGTGCAGGCGTCGATGACGTGTGAAAAAAAATAGGAA
AAGAGAAGGAAATCCGCAGCAGCAGCAGGGCAGCAAGGTATTTTGCGCAG
GTACATACACCAGTTTGGTTCCATAACTATCGAACCAATTGAGCCAAAGC
AATACCGGAGCCATCGACCGTGAGCTGTGTGTCTTGTCCCTCTCCTCCGT
TGGTAATCTTGGGCCGCAAGGCATCAATAGGCTAGCAATCTAGCTCTTGC
AGAAACCGATCACTCGTGAAAAAAAAAGGGAAGAAATCTCCGCCGTCTGT
CTGTCTGTACTGCTGTACAGGAGCATATATGCAGCAGTACCTGGTACCAT
GTATTTGCTGGACTCAACGGCCTTTCTTCTCAATTTTTCCACAACTCGTC
GGTTTCTGCAACGCTTCTATTGCTAGCCAGTTGATGCCTTGCGGCCTTAG
ATGACAACCGGAGGACAAGGACCAGAGGCATAGCTCACGGGCGATGGCTT
TGGCATTGCTGTGGCTCAATTGGTTCGAGAGTGATGGATGAAAAACCAAA
CTCATGTAGCGGCCCAAAATACAAAATACCTGCTGCTGCTGCTTGCTGCG
GCTCCCTCCTCCTGCCCGCTCTACTCCCTCACCCCACACTACTTTTGAGT
TCCGTCCGTTGCTCTCGAACGATTGAACCCACGGCAACAACAAAGCAATC
GCCCTTGAGCTGTGTGTCTGGTCCCTCTCCTCCGTAGGTCATCTGGGGCC
GCGAGGTATCGATAGGCTTGCAAAAATAATACCGCTGTATGTAGTTGTTC
AAGTCACCCGACCCATCGTGAGAGGCTGTGTGAGGAGGGCCCAAACTTTT
TCAATAAGTGTTTTCTGATCGATCGAATCGCTTAGAAAAAGTGATTTTTC
TGAGCGATTGGGTCGATCAGAAAAAGTTATTAGAAAAGTTGAGATAAAAA
AAGGGGGTTTTTCCATCTACAACAAGTGGTCAAACCGCCAAAGATCAATA
AAGGCCTTTTCTAAGGAGGGTTTTTGCAGCTATAATAAGTGGTCTGAAGT
GACACAGGAGGGGGGGTCAGAGATGAGTTTTTTTATTCTATTCCCCGCCA
CCGCGAAGTCGAATGTTGTGTACCCAGGATATACGGCTGCGTACAGACAC
CGATAGTCCCGGTGGTTTAGTTGGTTATCCACCCAACCTTCTGACATTCA
CGCGTGAGTGAGTAAACAAAATTCGATCGTACCAGTAACGAGGGAAAGGG
ATTGCTGTCCCCTTTCTCGCGGTAAAAGCTCAACCAAACAAGGCAAGCAC
CGCAGGGGGAAGTGGAAAAAAAATATGATTACTTCGTATATATATATATA
TATCTCCTGCGTTGACTTCCCCCTGTGTGACCCCGGTTGGAGCGTCTACC
TACCCGAAAAGTGCAGAGTAGCGTCCAATGAACAGGCTGACAAAACACAC
ACAACTCACAACACAGCAGTAGTTATAGTTATCGCTCTCTACTGCTGGGC
ATGATGTGAGAAAAGCCATACTTTGAGTCACTTCACCGAGATTCGAACTC
TCGTAGAATATCGAGGTAACCAACTAATTGTGAAGCGCACCGCATCTAGC
TGGTATTTGTAACCAGGGTGGCCGCCCGCCCGATAGAAATGCTGTTAACC
CTTCTGGGACCAGGGTGTCTTGTTCCTTTTCACACGAACAGCCCGGGTTC
CAAATCAGAACCATACAATGTTCCCCCGAGAAAAAAAAAATGGCTCAAAT
GTCCCTTTCAAATGTACAACAGTCACGAAACCAAGAGAAAATGTACACAA
CCGCACCACAAATATATACAGCCAGGGCCCCTGACGGGGGCTCACAGCGG
GCTGGTTACGTCCCTGGAGAGTACAGAAGGGATACGCGGTGGTCGAGATA
CCGCGGCCAGCTCTCAGGCGTCGTGCAACGTGTTCTAACCATCAATAGCG
CTTAAAGCATCCAGTCCCCTCAAAACAAGATAATAAGGAAAAAGAGTTAC
TCATTTCCCGCTTAGCTCCCGGCCTGGTAAACGTACTTTTGCGAAGGGGC
TCCGTGGCCTGCGGCCGGCCTGAATGCCGGTCCTTCCTTCTCGCACATAG
TAGGCACATCATTGGTACTGGTAGCAGCAGCAGCAGCAGCAGCAGCCGCA
GTAGTAGTAATCTAGCAACCAAGCGCATGCATCTACATCATATCTACATA
CATGCTGCTGCTGCTGTTGTCGCTGGGTTTTGACCAAACAAGATTTCGAA
GTAATAAATAAGATACCATGATGTATCATACATAGAGGTTTGACTCTCTA
CCTCTCTACTACTACTACTCTTCTTCCTTATTTTGTCATACCAACAAGGG
AGGAGGGATCATATGGCATGTGATGTACTGGTGTACAGCAGCGGCAGTAG
TAGCAGTAGTTGTAGTAGGGGTAGTGCTGCTATAATGGTGGTGTGGTGTT
GCAATCCAGAAAAATATGATACACTGCGAAGTGTATATTATCCTTTGTCA
GAAGAGATGATTTCAGATTTCGACATGCCGGGGATTTATTGAGTATGTTG
ACTGAGTCTTGCTGGGCACCCTCACACCCCTTGACCACACACAGCAGCAG
CTGTGAGCGGTGTTTGTTCGTCCTCTTGCCCGTATCTGAGTGCAGCCGGA
ATGCTGCTCAACCCCCAACGTGAGGGGTTCGGGAATTTTTTGTTTCTGTC
CCCGTCCCGAAGAGACTGGATTATGCATTTATCACCTCCGAAGTTCCAGA
AGGGTTAAAAACTTCCTCCTGCCTATTCAACAGATTACTGGTACCAGCAA
GACTACATACGACAGCGGTGCCCTAGACTACTGTTTGTAGATATCACAGT
TCACCCAATGGACTGAAGGGCCGCCCGCCCGATAGAAATGCTGTTAAAAA
CTTCCTCCTGCCTATTCAACAGATTACTGGTGCTAGCAAGACTACATACG
ACAGCAGTGCCCTAGACGTACGGCTACTGTTTGGCTACTGCTTGTAGATA
TCACAGAACACCAAATGGACTGAAGCGGCAGGTACACACCCAACTATTTT
CACGGCAACCAATTATTTGAAAGAGCTTTTAGTCTACTGCTGTTCTTTTC
TGCGATGTATGCATAATCGGAAGGCATCCATCCTCGCTCTGGATAGCGTG
TGTACAACTGGTGGTAAACGTGACAGGAAGCAATCGTCCACCCGGGGACC
AACTTTCAGTGTATTGGAGTGAAATGCTGTCTTCCTGGTTCTCATCTCAA
TCGTACTGAGTCTATTCACGTACCCCCCCGCCCCCGCCCCCGCCCCCGCC
CCCGCCTTTCCGATAGATTGAATTCTGCTGCGCGGAGCAGTATATGATGG
CGTATAAAGCTTACATTTTCTGCGATACCGACATCAGAAGCGACATCATG
AGCACGAGTGACCCTGCACAACAGAAACGCCTCGGGCAAGAGGTCGCCAA
CTACGATGGTGGTTTGTGGGACATGCACAAGGTGCAGGTCGTGCTCAGGG
GAAACTACGCCAAGTTCACGCAGAATCCCGAGATGTGCGACCAGCTTCTT
GCAACGGGAGACAAGGTGAGGAGATCAAGGGTTGGTACATGTGTAGGCAT
GTTTTCGTCCGTGCTTGCTTATTTTGTGGTTTCCACGCTCCTACACCGCG
ACAGTGCACGTTCAGAAGGGATGAGCCTCGTAACACTGAATAATACTTCC
AACATAGTTCAATGTCCACTCCGGGGTAATCGATCATCTCGTCGGGTTCA
TCGGGTGCATGCAAGGCGATGCTCACCGCCTTCTCGCTCGAAGAACAATC
AGGAGAGCACACCCTTGTTGCCTGGAAAAATCTCAAACTCTTCCGGCAGT
GATACCGAGGTGACATTAACGATGAGGAGCGATTGGGTTGAGGGACAAAC
TAACACACATCCGCAGATAATCTCGCACACGACATGCCATGTCTCCTCAT
CTTAAGGCTACCGCACTCCTTTCTGTCTAAACGGCGAAACGAATGCCGCC
AAGTGAAGTAGCTTCAGTAGCACTGCACCCAAGAAAGAGCCATACTCCTC
CGATCAAGAGTGAGAATAAAACCAAGCATCATATCGCCCTCGTCGGCTAC
AGGGGTGCCACCTTTCCTCCAGGGCAGCACGTTTGACAACACCCACCTGG
TTTGGTGCAAAACCCCCGAGCCGAGCTACATGATTTAAGAAAAATAAAAA
TAGTCATGAAAAGGAAGGGATCCCCCCGCTTCAGCGTATGCATGATCAGC
TCTTCAGCAGGCAATTTCACTGTTTTTCCTCCGGCGTAATCCTTGTGTTC
CGATGTGCATGGGGCCAGAGCTGCACTGCATGTTTAGTGTTCACATTAGC
TCAGTCAGATGCGCCACCTGCACAGTTTATCGAGTGGTAAGGTGGATTCG
CGCCCATTGTGACCAGGGAAACGCCCCAAGTTCGTGAATAGATGCAAACC
TTCTCGTTCCTTACTTTGCCTGACCTAGCTTGTCCAGTGGGAGCGGTGCC
AACCCATTAATGCCGTGAGAGTAAATAGATCTGCACTGTTCGTATCTCTG
CGACCCTGTCCCTTGCTTTCATCGACATCCGGCAGATGCTAGCGGAAGCT
AGTCCGAATGATAAGGTGTGGGGGATCGGTATGAACGCATTTGATCCCGG
CGTGGAACGTCATGAGTGCTGGGGTGGCCAAAACCTGCTTGGGAAGATTC
TCATGTATGTGCGCAACAAGATCAGATGGGAGCATCCTGACCTCGCCAGC
AGGCCTCAGGTGCAAGAAGCTGCTGCCGCAATGGAAGTGGAATACGGTCT
CACCCCTTCAATCGCCCCTTTCGCACCACCGGCTGGAGCGGCCATGACAG
CGGGTTCCTTGGGGGCATACGACATGACGGCGTTGCAGACCCAGCTGCAC
TGCCCCGACATGGCATTCCAGCGTGCGCATGTGACCGCACCCCCCACTTT
AGGAGGACCTGCACCCGAGGTGGTCAGCGTTACGTCCGTACCACCGGCAC
AGCAAAGCACAGCCGACGCGTACGCGAAGACGCCGGGCAAGAATTGACTC
GCGTTGAGGCACCACGCGATCTCATACCCAAAAGATTTTCAACACCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig117:221811..232258-

>mRNA_P-littoralis_Contig117.63.1 ID=mRNA_P-littoralis_Contig117.63.1|Name=mRNA_P-littoralis_Contig117.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1059bp|location=Sequence derived from alignment at P-littoralis_Contig117:221811..232258- (Pylaiella littoralis U1_48)
ATGGCAGCGGCCCTGAGGCCGGCGGGAACATCACGACGTGTTCTCCCGCC
GGACCGAGCCAGCGGAGGAAACAAAAAGTTGGTGTCCACGTCCATGCTTC
GACCGGGCGCCAAGAGGAACCAGCACAAAAGCAACCCCAAGCCAAGCGGG
CCGCACACCTCTGCTGGGTATCACGAATACCCTCGCGCTGCCAATAGAGC
GGTTCCACCCCCGCACCAGACGCTTCCCATCACCCGCCACACCTCGACAG
CGTGGCAAGCGTTGAGGGTAACTGATACAGTGGTATTGTTCTGGGAGCCC
CCGTGTGTGTTCACGCAGTGGGAACCGGCCTACTTCAAGGTTGACGGGAT
TGAATTCTGCTGCGCGGAGCAGTATATGATGGCGTATAAAGCTTACATTT
TCTGCGATACCGACATCAGAAGCGACATCATGAGCACGAGTGACCCTGCA
CAACAGAAACGCCTCGGGCAAGAGGTCGCCAACTACGATGGTGGTTTGTG
GGACATGCACAAGGTGCAGGTCGTGCTCAGGGGAAACTACGCCAAGTTCA
CGCAGAATCCCGAGATGTGCGACCAGCTTCTTGCAACGGGAGACAAGATG
CTAGCGGAAGCTAGTCCGAATGATAAGGTGTGGGGGATCGGTATGAACGC
ATTTGATCCCGGCGTGGAACGTCATGAGTGCTGGGGTGGCCAAAACCTGC
TTGGGAAGATTCTCATGTATGTGCGCAACAAGATCAGATGGGAGCATCCT
GACCTCGCCAGCAGGCCTCAGGTGCAAGAAGCTGCTGCCGCAATGGAAGT
GGAATACGGTCTCACCCCTTCAATCGCCCCTTTCGCACCACCGGCTGGAG
CGGCCATGACAGCGGGTTCCTTGGGGGCATACGACATGACGGCGTTGCAG
ACCCAGCTGCACTGCCCCGACATGGCATTCCAGCGTGCGCATGTGACCGC
ACCCCCCACTTTAGGAGGACCTGCACCCGAGGTGGTCAGCGTTACGTCCG
TACCACCGGCACAGCAAAGCACAGCCGACGCGTACGCGAAGACGCCGGGC
AAGAATTGA
back to top