mRNA_P-littoralis_Contig67.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig67.45.1
Unique NamemRNA_P-littoralis_Contig67.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig67.45.1 vs. uniprot
Match: D7FVM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 5.580e-62
Identity = 142/279 (50.90%), Postives = 161/279 (57.71%), Query Frame = 3 
Query:  129 LLLWSRRGLAFSLPTATAAXXXXXXXXXXXXXGPDFFQHVLVEHTDQLQXXXXXXXXXXXXXAGDQPTPLVPPPHLFCIPAPGGDICLVVDEQGGYHAVRDVCPPLGVPVSQTGVVDSQVGAIGDSLLGTRFHLNDGTVRGPWCPGGGTAGPLLLRLARHRRYARLARLLVDPPRRMSWMAQRLSSSLSRQRKRERVETPLLRRPLKFGESNAATAATGLEVFAVTKQPDGSLTVVLPRLPQPLRTATGKCKAGDGGLAATAAATAVVQAKRNLAGYDY 965
            LLLW     AFS   A                  +FFQH LVE TDQL               G++ +  VPPPHLF IPAPGGD+CLVVDE+  Y+A+RD  PP GVPVSQTGVVDSQV AIGDSL GTRF+L DGTVRGPWCPGGGTAGPLLLRLARHRR+ RL    +   R ++ +   L S +S+QR R R       RP     +N  T  T LEV  VT+QPDGSLTV LPR P  L    G   A  GG  A  AA   VQ   N    D+
Sbjct:   33 LLLWIGGAYAFSAAAAAGPAAATT----------EFFQHTLVESTDQLDKLQQPRHH------GNECSGPVPPPHLFRIPAPGGDVCLVVDEKKNYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLKDGTVRGPWCPGGGTAGPLLLRLARHRRH-RLFNQCIGVARSINRLTHHLFS-ISKQR-RARGSWATYFRPPSSPNANERTTTT-LEVLTVTEQPDGSLTVALPRCPSVLAPGGGGDSAAKGGFVAAVAARGTVQEGVNPTEVDF 291
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BLAST of mRNA_P-littoralis_Contig67.45.1 vs. uniprot
Match: A0A6H5JUG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG0_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 8.900e-55
Identity = 150/298 (50.34%), Postives = 173/298 (58.05%), Query Frame = 3 
Query:   90 PPIKIPAVSYCF-LLLLWSRRGLAFSLPTATAAXXXXXXXXXXXXXGPDFFQHVLVEHTDQLQXXXXXXXXXXXXXAGDQPTPLVPPPHLFCIPAPGGDICLVVDEQGGYHAVRDVCPPLGVPVSQTGVVDSQVGAIGDSLLGTRFHLNDGTVRGPWCPGGGTAGPLLLRLARHRRYARLARLLVDPPRRMSWMAQRLSSSLSRQRKRERVETPLLRRPLKFGESNAATAATGLEVFAVTKQPDGSLTVVLPRLPQPLRTATGKCKAGDGGLAATAAAT-----AVVQAKRNLAGYDY 965
            P     A S CF +LLLW     AFS       XX             +FFQ+ LVE TDQL+XXXXXXXXXX    G++    VPPPHLF IPAPGGD+CLVVDE   Y+A+RD  PP GVPVSQTGVVDSQV AIGDSL GTRF+L DGTVRGPWCPGGGTAGPLLL LARHRR+ RL  L +   R ++ +   L     ++R R    T    RP         T  T LEV  VT+Q DGSLTV LPR    L         G+G  AA    +     +   AK +L GYD+
Sbjct:   18 PTFHPGASSLCFVILLLWVGGACAFSAAXXXXXXXPTT----------EFFQYTLVESTDQLEXXXXXXXXXX----GNEWFEPVPPPHLFRIPAPGGDVCLVVDENKSYYAMRDCFPPFGVPVSQTGVVDSQVDAIGDSLFGTRFNLEDGTVRGPWCPGGGTAGPLLLWLARHRRH-RLFTLRIGVARSINHLTHHLFLFSKQRRARGSWATSF--RPPSSPNFIEKTTTTTLEVLTVTEQLDGSLTVALPRCSSAL------APGGNGNSAANGRPSPMHNASTFAAKCDLEGYDF 292
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BLAST of mRNA_P-littoralis_Contig67.45.1 vs. uniprot
Match: A0A836CM18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM18_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.690e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:  321 DQPTPL--VPPPHLFCIPAPGGDICLVVDEQGGYHAVRDVCPPLGVPVSQTGVVDSQVGAIGDSLLGTRFHLNDGTVRGPWCPGG 569
            DQ  PL   PPP +F IP   G +CLVVDE G  HA+RD CPPLG P+S TGVVDS++G I D   GTRF+L+ G  RG  CPGG
Sbjct:  660 DQLAPLGAPPPPLVFSIPVLCGTVCLVVDENGKSHAMRDSCPPLGSPISATGVVDSEIGVIEDLRFGTRFYLSSGAPRGRLCPGG 744
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVM6_ECTSI5.580e-6250.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG0_9PHAE8.900e-5550.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM18_9STRA2.690e-1858.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig67contigP-littoralis_Contig67:274213..278531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr9046
PFAMsRieske_2
Model size2396
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue4.92e-08
EggNOG OGs2DKM1@1|root,2S634@2759|Eukaryota,2XCF7@2836|Bacillariophyta
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-01_009460.1
DescriptionRieske-like [2Fe-2S] domain
Cds size933
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791394.4810174-UTR-P-littoralis_Contig67:274212..2756401680791394.4810174-UTR-P-littoralis_Contig67:274212..275640Pylaiella littoralis U1_48UTRP-littoralis_Contig67 274213..275640 -
1680791394.5155287-UTR-P-littoralis_Contig67:278496..2785311680791394.5155287-UTR-P-littoralis_Contig67:278496..278531Pylaiella littoralis U1_48UTRP-littoralis_Contig67 278497..278531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791394.4917893-CDS-P-littoralis_Contig67:275640..2761231680791394.4917893-CDS-P-littoralis_Contig67:275640..276123Pylaiella littoralis U1_48CDSP-littoralis_Contig67 275641..276123 -
1680791394.5048878-CDS-P-littoralis_Contig67:278046..2784961680791394.5048878-CDS-P-littoralis_Contig67:278046..278496Pylaiella littoralis U1_48CDSP-littoralis_Contig67 278047..278496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig67.45.1prot_P-littoralis_Contig67.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig67 275641..278496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig67.45.1

>prot_P-littoralis_Contig67.45.1 ID=prot_P-littoralis_Contig67.45.1|Name=mRNA_P-littoralis_Contig67.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MIRLLWPPPWAKVAAAIFPPIKIPAVSYCFLLLLWSRRGLAFSLPTATAA
AARGKNNSNNNNDGPDFFQHVLVEHTDQLQQRRYHEHHDDGGSAGDQPTP
LVPPPHLFCIPAPGGDICLVVDEQGGYHAVRDVCPPLGVPVSQTGVVDSQ
VGAIGDSLLGTRFHLNDGTVRGPWCPGGGTAGPLLLRLARHRRYARLARL
LVDPPRRMSWMAQRLSSSLSRQRKRERVETPLLRRPLKFGESNAATAATG
LEVFAVTKQPDGSLTVVLPRLPQPLRTATGKCKAGDGGLAATAAATAVVQ
AKRNLAGYDY*
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mRNA from alignment at P-littoralis_Contig67:274213..278531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig67.45.1 ID=mRNA_P-littoralis_Contig67.45.1|Name=mRNA_P-littoralis_Contig67.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4319bp|location=Sequence derived from alignment at P-littoralis_Contig67:274213..278531- (Pylaiella littoralis U1_48)
CGCTGAGAGTAAATTCGAAGATCGCCCACGGGATCATGATTCGTCTCCTT
TGGCCGCCGCCATGGGCAAAAGTGGCAGCAGCGATATTTCCCCCAATCAA
AATCCCTGCTGTCTCGTATTGCTTCTTGCTACTGCTGTGGTCCAGGCGTG
GGTTGGCTTTCTCCCTCCCCACCGCCACGGCTGCCGCCGCACGTGGCAAG
AACAACAGCAACAACAACAACGACGGTCCTGATTTTTTTCAGCACGTTCT
CGTCGAACACACCGACCAACTGCAACAACGACGGTATCATGAACATCATG
ATGATGGTGGCAGCGCTGGCGATCAACCTACCCCGCTTGTGCCCCCTCCT
CACCTGTTCTGCATCCCCGCGCCTGGGGGGGACATCTGCCTTGTAGTGGA
CGAGCAGGGTGGCTACCACGCCGTTCGCGACGTGTGCCCGCCTCTGGGCG
TCCCTGTTTCTCAAACAGGCGTCGTTGATTCTCAGGTGGGGTGCCCCGCC
CCCTCCCTCACTTCGTTGTGTTTACCCTGTACTGCCGTATGCATGTGGCA
TCTTTCTCGCTCTCTCTCGGGCGCGTGCTTACTTTTTCGATGATGGTTGT
GGTGGTGGTTTTATCCGAAGAGTTGTAGCGTCCGAAAGAAAAAGCGTAGC
AAGCACCTGCCCGGTTTGACGTAGCGGACATATACTTACTTCGGTTGGTT
GCCACGGCCCTCTTTGTTTCGTATCTGCCTAACACGCCTCCTGTGCCCAA
CACTACGCACTACTGCTGTTCTGCGTACGACAATCGCACCCCGGATGCAT
TGAGTACTCTGACGGGCCCTTGTTCCGCGCTCGTCTCTCTCCTCGGCCAC
GAAGAGAATGCAATCCAACACGACACTACTGCTGCATTTACATTTATTGC
ACGAAAGCAATTTGCGGACTAGACTAAAGCAGGCAGTGGTAGTCACAGGT
GCATGCATTCCAAGATCACTACCGGTATGCTTGTACTAAATTGTAGGACC
CATAAGGCAAAGTACTCCGTACAGCAGTACAGCAGTACTTGGACGCATCA
TGTGCGTCCTCTCGCATGCAAGGCAAGGTCGTGGGCTCTGTGCACCAAGC
CTTGATGCTGACAGACACCCCGTTTGTAGACGTGTGTGTGCGGTGTGTGT
GTATGCGTGTTGGCTCATGCACTCAAGACTGCTGCTGTGTCATGTGTCTT
GTCTGCCGCGGGCTGTAAGAGGCGGCTTCGTGCTCGTGACCTGTGACCTA
CCTGTCTGCTTCGGATGGTGTGTTGTGCAAAATGAAATGTGGGTCATCAT
CAATCATGCAATCTAATGTGATTGTTTGTTGCGCTGTCATGTGTGGTGCT
AACGTTGGCTTGCCTGGTGCAACGGCAAACCTCTTGTTATGTTCTGTGGC
AATGCTGTTAGTTTATATACCTGGTATATACTTCCTCTGTATCATAAGTC
TGTGCCGTTATGTTAAATGGTGTCCGATGTCTTCGACGATAATTTTTTCG
AAATCTTCGGAGGTTTTTGGGTTGAAACACATTTTTTTTTTTTCTTGCGC
ACTACACTGCATGGGCTAGCGGCTAACAAAAAAAAGTACAAGTAGTCAGG
GCAAAAATGGCCGTATTTGACCCTTTCCAGAGGTGGAGGGGGGGGGCGGG
GGCACAAAAAAACCCAATGCAATCTCCCCCAAAATTATCCCTAACCCTGA
ACCTAGCCCCCCTAACTCAAAGATTCATGTCGAGTTCCCCCTTACTAAAA
TCAGTATAATAGTGACGCCACACTAAAACCAAGACAATTGGGTTTTCCAC
ACTAAAACGAAGATACTTGGGACTCATGCGTTAAAACCAAGACATCTGGC
GGAATCAAAATTCTCAAAAATGGGCCAAAATGGGCATATTTTGACTTCAT
TTTAGTATAAACAACTGGCTTTTTTTTTCTTTTTTTTTTGCATCAGCTTC
TTTGAAACTTCATCTTTCGAACGAACCAAACTATAGGATGATCGAAACAG
TATGGACGCGCAAACAATTACACGCACCTAACAGCCCAGACTTATGATAC
AGAGGAAGTATATATAATATATATAGCCTCGGTATTATTTGGTCTGGCCA
GCCTCGTGCGCGAGGCACATCGTTCAGAAAAAGCCTTCGATCGGGTTAAG
ACCCCCAATAATGATCAATGATTTTCTTCCGACTAAGTATTTTTGGACTT
CTTTGCTTCTTTGGTCTCGAAGGGTTTTTCGGAAAATCATTGGCGTCGTC
GGAAGGTAATGAGAGCTTGGCCAATCAGAGACCTTCTATGATAATGATTT
ATTCCAATAATGATTTTCCCACTATCGTTAATACAGGGCCTAATTCAAAC
ACATACGTGCTGTACACCGAAAACAAACATTAATAAATGAAAAATTAAAT
CTTGTCAGGTGGGAGCGATCGGCGACAGCCTGTTAGGCACGCGGTTCCAC
CTCAATGACGGCACCGTCCGCGGGCCCTGGTGCCCCGGCGGCGGGACGGC
CGGCCCGCTCCTGCTCCGGCTCGCGCGCCACCGCCGATACGCCCGCCTCG
CTCGCCTTCTCGTCGACCCACCCCGGAGAATGAGCTGGATGGCACAACGT
TTGTCATCATCGTTGTCCCGGCAGAGAAAAAGAGAACGGGTAGAGACGCC
TTTACTTCGACGACCGTTGAAATTTGGTGAGAGTAACGCAGCAACGGCGG
CAACGGGGTTGGAGGTCTTTGCGGTCACGAAGCAACCTGACGGGAGCTTG
ACGGTCGTATTGCCGCGGTTGCCACAGCCGCTTCGTACCGCCACCGGGAA
GTGCAAGGCGGGCGACGGGGGCTTGGCAGCAACGGCGGCTGCGACGGCGG
TTGTGCAGGCGAAGCGCAACCTGGCAGGCTACGACTATTAGACGATACAC
CAAGACGGGCCGCTAGAGGGAGGGTAAATCTTACGGAGTACATAAATACC
TGATGCGAGGATCGCCTATAACTCTGTTAGGGCTAGGGCGAGCAGGTATC
ATAGCGTTATTATTCAGGCAGGCTCCGACGATCGAGAGGGAGGTAAAGGG
CATGTCTTGGAAGAAAAAACGAGGTGTGGAAAGGGGAACGTGGAACCTAG
ATTCCTCGTTCCCTGTTCCACGCTTTGTGTATTGGAAAAAAAAAGACTAC
TTCGAAATGAAGAACGTGGAACCGTTTGCATGCGAAAAGCCTGAGGGTCG
CTGTTGTTGTGGTGCAGGTACAGAGGTACAGAAGTAAAGTAGCAGTAACA
GCAGGAGGAGTACCGTGCCCGTTGAGGGTTATTCAACACCACACACACAC
GCACGCACGAATCTGTCCATCTCCCATCTCTCGCCCACAGAGCATACACA
GACATACACATACATACAGTACACACACAGCATAGCACACAATGATGTGA
GAGATGGTTTCATCTCGGCCGGCCGCAGCCCTCCGCGCGCCCGTTTGGCC
AAAAAGCGGAGGAACAAACAGACGAGGTGTGCGATGGTGCGATCATGTTT
TCTGTGCTGCTCTTCTTGCTGCTGCAGTGCGGTGACTTTTTCATGCGAGT
GAGAGGGCTTATATATTACGGTGAATTCTACGCGTGGCGCTAGGCGGGGT
GGCATGATTGTGGGGGGAGCTAGCTGTGCATGTGTGTATGTGTGTGTTTA
CCTTGTGTGTGTGGTATGTTTTTTGTGGTCAGATAAAGGGAGAAAGCTAC
TGGAAAGTTCTTGCCCCCCGGTAGCCCGTTCCACACAGGCTTTTGGACAA
TTTTAAGGAACGGAGGCCTTCCAATTATTTTGGAGGAGGGAACGAGAAAT
GTGGAACCCCGGTGGCCGAAATTCTTTCCAGGAATATTTTTTGCTGAGGT
TGGCCAATCAGAGAATTATTCTAGGTTCCACGTTCCCCGTTCCACACCTC
GTTTTTTTTTCCCAAGGCATGCCCTGACTCTCGATAGTTGATCACCGCAG
TCACTGAAGCTGTTGAAGTTTAAGATGTAAGGTGCCCTCGTATCACTCGC
GGGCGAGGCAGCTCAGTGATGTCGCGTAGTTGGAAGAAAGATCGGAGAGT
TGCAACATATATGGGAGGGGTGTGGAGAGAGGGAGATGTGGTCGGTCCCG
ATATCGAGACAACGGCAGTAAGTTCAAGATCCCATCAACTTGTGGGAGGC
AGTTTAAGGTGACGTCGCATGATCGATGCGAGCAAAACGAGATGTTTTTT
GGAAAATACGAACGCAGAGTGTGGTGTGGTACTCCGTGAGTACACTTGAC
TCAAAACACGGCGGTACACGCCCTGCCGTACAGGCAACATGTCCGTCCGG
CTTGGAAGGATCAACGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig67:274213..278531-

>mRNA_P-littoralis_Contig67.45.1 ID=mRNA_P-littoralis_Contig67.45.1|Name=mRNA_P-littoralis_Contig67.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=933bp|location=Sequence derived from alignment at P-littoralis_Contig67:274213..278531- (Pylaiella littoralis U1_48)
ATGATTCGTCTCCTTTGGCCGCCGCCATGGGCAAAAGTGGCAGCAGCGAT
ATTTCCCCCAATCAAAATCCCTGCTGTCTCGTATTGCTTCTTGCTACTGC
TGTGGTCCAGGCGTGGGTTGGCTTTCTCCCTCCCCACCGCCACGGCTGCC
GCCGCACGTGGCAAGAACAACAGCAACAACAACAACGACGGTCCTGATTT
TTTTCAGCACGTTCTCGTCGAACACACCGACCAACTGCAACAACGACGGT
ATCATGAACATCATGATGATGGTGGCAGCGCTGGCGATCAACCTACCCCG
CTTGTGCCCCCTCCTCACCTGTTCTGCATCCCCGCGCCTGGGGGGGACAT
CTGCCTTGTAGTGGACGAGCAGGGTGGCTACCACGCCGTTCGCGACGTGT
GCCCGCCTCTGGGCGTCCCTGTTTCTCAAACAGGCGTCGTTGATTCTCAG
GTGGGAGCGATCGGCGACAGCCTGTTAGGCACGCGGTTCCACCTCAATGA
CGGCACCGTCCGCGGGCCCTGGTGCCCCGGCGGCGGGACGGCCGGCCCGC
TCCTGCTCCGGCTCGCGCGCCACCGCCGATACGCCCGCCTCGCTCGCCTT
CTCGTCGACCCACCCCGGAGAATGAGCTGGATGGCACAACGTTTGTCATC
ATCGTTGTCCCGGCAGAGAAAAAGAGAACGGGTAGAGACGCCTTTACTTC
GACGACCGTTGAAATTTGGTGAGAGTAACGCAGCAACGGCGGCAACGGGG
TTGGAGGTCTTTGCGGTCACGAAGCAACCTGACGGGAGCTTGACGGTCGT
ATTGCCGCGGTTGCCACAGCCGCTTCGTACCGCCACCGGGAAGTGCAAGG
CGGGCGACGGGGGCTTGGCAGCAACGGCGGCTGCGACGGCGGTTGTGCAG
GCGAAGCGCAACCTGGCAGGCTACGACTATTAG
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