mRNA_P-littoralis_Contig67.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig67.3.1 vs. uniprot
Match: D8LKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI) HSP 1 Score: 1087 bits (2811), Expect = 0.000e+0 Identity = 829/1505 (55.08%), Postives = 938/1505 (62.33%), Query Frame = 1
Query: 1 NYVSIALCNVAAASHCETQQLLPTREDKIA---VTGAPHGAPMKEGSGGAQGNDTVQGGSSQRQGGAASSIHGRPSLLKDNEPEHSSIVQSQGSGALDISKARGESSVSADDVDGPGAAGVAGGVCGDQYWLRTTNILRDIIDECLATATANVKSNLIKAMNNLMVSNERRAVLVAGHEMSSLFGLVHGYTPGIRELVARMLWNLTCERGFHSTLLEAGVTDTLLELLGPPSTQSMKKITQQTKSIAXXXXXXXXXXXXXXXXXXXXXXXXXSRTTMDLKTSVVTRRRGSGSSGTASGEHGNNPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSGSGHIADAGGKGS-KGDDVSTGGGVPGAGLAATEVAGMGHKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTHITREDPIESPNEDMAADLWVMWQAVVLQLSFVEQYRALIVYHGDGKVFSHLKLTNDPLSGKSSVMSMAHDRVYKRLIMGTMVNLSCDPSLYEELEGQVQVLREFLSEYEQEASGG-HSTG--------MPLGMISXXXXXXXXXXXXXXXXXXDMDDRGIDEGGXXXXXXXXXXXXXXXXXDASSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPVAGILVGLLCGPPTRWNNHMMHSAGS--GYGEPRPLLYGGGDKSAAIVSRFVCEMSILYSAEGGFELPQRTFDALVKIAHYYNYNASVSPPGSAPD---PWKTSSSKXXXXXXXXXXRGTGAGGWLGGERSSFKASSVRGPPLLREGMETFTRENDGDYD--DKRAEPPDKGRARTTVLS-----SPAATIDDQDKDRRSSDSXXXXXXXXXXXXTAGTAGLPTKRGSEGRGGGXXXDPGAGVRSA----TQQPTEPNKKPQQQPVGDDWYTEGEA-PLNSLASERNSDSSSSGKKPGGGSGGESAWSRTAREITKLWVRAVGSLCCPSHSELWPQLLDVGIFGALNKCLSSSALSGDDEGLAICSAALRNLSTAIAPCSLGGERAAACFGAAKRLLFCC-DQPQVQINCAAAIVKFVDATQAQDLQTLDVVGLLGQHGSWTDGGD-THSAIIVGELAVYSLSKLCTRDFVPKGDRVIATITTMMDFDQQTTKRLEDSVRTLVDPPLPPRRPWKYLHPNEDLGATALPALNKRAQDGQSGEELGIEHAS-ERISSPMQDLINS-YQGLTRHDTNAATAAAT--KSGGSEVKGKETEDGQSKGSGGIKSGGDGGLEKEAAAASLSAASLPERYGKRA----AADVRTRDGESEENRRTP-----SLRVTAKKLAELIKKASAAAKTSGSKSTGPVNLESRILGNPILAAEEPAFELPWLLNHGKAERLKLLEESLSTPAERKEGKGGVLTHQPPVRRSDGKRASTRVGVGNSAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGVGREGAGVEESEDGGFEVLTVPDDKWISPDLPPEAGKQ 4380
+YVS+ALCNVAAA+ CETQ P + A + A + EG GG G DT GS QRQ SS L+ EP+++ +V +GSGA S + D+ +G AAG GD++WL TNILRD I CLA+ATA+VKSNLIKAMNNLMVS ERRA LVAG EM +LF LVHGYTP +RELVARMLWNLTCE FH LLEAGVT TLLELLG S + KK +Q X XXXXXXXX + ++ S G G SG + XXXXXXXXXXXXXXXXXXXXXXXXXX H ADA G+G+ + STG V A L A E MG KPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLT I EDP ESPNEDM ADLWV WQAVVL+LSFVE+YRALIVYHGDG++FSHLKLTNDPLSGKSSVMSMAHDR YKRLIMGTMVN+SC+ SLYEELEGQVQVLREFLSEYE EASGG HSTG XXXXXX D D+RG DE G XXXXXXXXXXXXX SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKP+AGILVGLLCGPPTRWNN +S GS G GEPRPLLYGGG+++AAI SRF+CE+ ILYS EGGF+LPQRTFDALVKIAHYYNYNAS +P +A PW+ G G+GG +GG ++ + + P +GM++ T D D A ++G A L+ SP D +++RRS S A A PT+ XXX TQQ T ++K QQ VGDDWYTEG P N NS K+ G GE AWSRTAREIT+LWVRAVG LC PSHS LWP ++DVGI GA+N C+SSS LSGD+EGLAICS LRNLSTA + SLGGERAAACFG AKRLL CC DQPQVQ+NCAAA+V VDAT QDLQTLDVVGLLG++ SW D GD T SA VGELA+YSLSKLCTRDF+PKGDRVIATITTMMDFD QT KRL+DSVR+LV+P LPPR PW +LHPN+ LG TALP L K A +SGE + S +R D +N +QGL DT+A + + LE+EA A SL+AA LP K A AA V + N R +L+ TA +LA +I + S AA+ SK + LE+RIL NP+L+ EEP FELPWLL HGKAERLKLLEESL G + RR+D T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G E+G FEVLTVPDDKWISPDLPPEAGKQ
Sbjct: 853 SYVSVALCNVAAATQCETQLPSPRNDGGAATPELASTQDKAAVNEGGGGGHGKDTNDHGS-QRQSDGGSSAQS----LRSREPDNNHMVSHEGSGAA--------VSETIDNNEGSVAAGD-----GDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVAGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHPALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXDSNAAASIRGVGNXXXXXXXXVSATDASVSGTQSSGAALLDDGGVGAVSGGETESAQ------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTADAVGQGATRRSSSSTGERVASARLEAVEAVSMGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTXXXXXXXXXXXXXXXXXXXMGLADSDGLESADSDERGFDEDGSGMXXXXXXXXXXXXX----SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSTSGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASSTPAAAASTQSHPWRIGE-------------GGGSGGEVGGGLAASASVGEKQP----QGMDSNTSPKAAGKDSKDSAAVMSERGLASNDNLADSLSMSPPTGTADHEENRRSPSSPERPHDSTRSSLEATAAPAPTEEXXXXXXXXXXXXXXXXXXXXXXXXTQQTTA-SQKTLQQSVGDDWYTEGAGRPHNPAYRHGNS------KQGSEGGAGEDAWSRTAREITRLWVRAVGWLCSPSHSNLWPHMIDVGILGAINTCVSSSTLSGDEEGLAICSTVLRNLSTATSARSLGGERAAACFGTAKRLLSCCSDQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATTVGELAIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPELPPRGPWNFLHPNDALGLTALPVLTKGAHK-KSGEAVDQGQLSVQRSPENTHDTMNGQHQGLQLGDTSATMTSTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEREAMA-SLAAADLPNGSSKSAIESAAAGVAATGAGGDGNNRKGRGDGRTLKNTAARLATVISETSMAARAFTSKPSRAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESL-----------GGTPSRSATRRTDPSSTKTTSXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGIKEATAAAERARGTVLEEEGAFEVLTVPDDKWISPDLPPEAGKQ 2278
BLAST of mRNA_P-littoralis_Contig67.3.1 vs. uniprot
Match: A0A6H5JX20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE) HSP 1 Score: 796 bits (2056), Expect = 3.860e-260 Identity = 635/1512 (42.00%), Postives = 740/1512 (48.94%), Query Frame = 1
Query: 301 GESSVSADDVDGPGAAGVAGGVCGDQYWLRTTNILRDIIDECLATATANVKSNLIKAMNNLMVSNERRAVLVAGHEMSSLFGLVHGYTPGIRELVARMLWNLTCERGFHSTLLEAGVTDTLLELLGPPSTQSMKKITQQTKSIAXXXXXXXXXXXXXXXXXXXXXXXXXSRTTMDLKTSVVTRRRGSGSSGTASGEHG--NNPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSGS----------GHIADAGGKGS-KGDDVSTGGGVPGAGLAATEVAGMGHKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTHITREDPIESPNEDMAADLWVMWQAVVLQLSFVEQYRALIVYHGDGKVFSHLKLTNDPLSGKSSVMSMAHDRVYKRLIMGTMVNLSCDPSLYEELEGQVQVLREFLSEYEQEASGG-HSTGMPLG--------MISXXXXXXXXXXXXXXXXXXDMDDRGIDEGGXXXXXXXXXXXXXXXXXDASSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPVAGILVGLLCGPPTRWNNHMMHSAG-----------------------------------------------------------------------------------SGYGEPRPLLYGGGDKSAAIVSRFVCEMSILYSAEGGFELPQRTFDALVKIAHYYNYNASVSPPGSAPD---PWKTSSSKXXXXXXXXXXRGTGAGGWLGGERSSFKASSVRGPPLLREGMETFTRENDGDYDDK--------RAEPPDKGRARTTVLSSPAATIDDQDKDRRSSDSXXXXXXXXXXXXTAGTAGLPTKRGSEGRGGGXXXDPGAGVRSATQ-----QPTEPNKKPQQQPVGDDWYTEGEAPLNSLASERNSDSSSSGKKPGGGSGGESAWSRTAREITKLWVRAVGSLCCPSHSELWPQLLDVGIFGALNKCLSSSALSGDDEGLAICSAALRNLSTAIAPCSLGGERAAACFGAAKRLL-FCCDQPQVQINCAAAIVKFVDATQAQDLQTLDVVGLLGQHGSWTDGGD-THSAIIVGELAVYSLSKLCTRDFVPKGDRVIATITTMMDFDQQT-----TKRLEDSVRTLVDPPLPPRRPWKYLHPNE--DLGATALPALNKRAQDGQSGEELGIEHASERISSPMQDLINSYQGLTRHDTNAATAAATKSGGSEVKGKETEDGQSKGSGGIKSGGDGGLEKEAAAASLSAASLPERYGKRA----AADVRTRDGESEENRRTP-----SLRVTAKKLAELIKKASAAAKTSGSKSTGPVNLESRILGNPILAAEEPAFELPWLLNHGKAERLKLLEESLSTPAERKEGKGGVLTHQPPVRRSDGKRASTRVGVGNSAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGVGREGA-GVEE----------SEDGGFEVLTVPDDKWISPDLPPEAGKQQQ 4386
G + ++ +D G + AG GD++WL TNILRD I CLA+ATA+VKSNLIKAMNNLMVS ERRA LVAG E+ +LF LVHGYTP +RELVARMLWNLTCE FHS LLEAGVT TLLELLG XXXXXXXXXXX D + R G+GS G ++ + SG + SG H ADA G+GS + TG V A A E +G KPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLT I EDP E +LTNDPLSGKSSVMSMAHDR YKRLIMGTMVN+SC+ SLYEELEGQVQVLREFLSEYE EASGG HSTG LG XXXXX D D+RG+DE G GRDWVRHELCAKLVSNLFSSKTLRERLSKKP+AGILVGLLCGPPTRWNN + G GEPRPLLYGGG+++AAI SRF+CE+ ILYS EGGF+LPQRTFDALVKIAHYYN NAS +P +A PW+ G GG GGE A+S GM++ T D K RA A + + P T D ++++RS+ S A A P++ XXX Q T+ + K QQ VGDDWYTEG ++ A ++ K+ E WSRTAREIT+ WVRAVG LC PSHS LWP +++VGI GA+N C SSS LSGD+EGL I SAALRNLSTA + SLGGERAAACFG AKRLL +C +QPQVQ+NCAAA+V VDAT QDLQTLDVVGLLG++ SW D GD T SA +VGEL +YSLSKLCTRDF+PKGDRVIATITTMMDFD Q R LV L+ E D G ++ + A D +G+ G++ + +I++ LE+EA A SL AA L K A AA V + + N R +L+ TA +LA +I + S AA+ SK + LE+RIL NP+L+ EEP FELPWLL HGKAERLKLLEESL R + T + + K A + G GG +GV +GA G++E E G FEVLTVPDDKWISPDLPPEAGKQQQ
Sbjct: 6 GSGAAVSETIDSNGGSEAAGD--GDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSEERRAKLVAGDELPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSX-----------------------------XXXXXXXXXXXXXXXXDSNAAASIRGVGNGSGGASATDASVSGTQSGAALLDDGGVRPVSGGETESAQDGSSGDVGPATSGAGGVGSGPEASTXXXXXXXHTADAVGEGSTRRSSSGTGERVASARSEAVEAVSIGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTFIMHEDPNERG-----------------------------------------ELTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTLGGXXXXXXXXXXXXXXXGLGLADSDGLESADSDERGLDEDGG---------------------GRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKCEGEPPXPNPPLPEGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNCNASSTPAAAASTHSHPWRI-----------------GEGGGSGGEVGGGVAASASVGEKQPRGMDSNTSPKASGKDSKESAAVMSERALASTDNLADSLAMFPPTGTAD-HEENQRSTSSPGRAHGSRRSSLEATAAPAPSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQTKASHKAWQQSVGDDWYTEGAGRPHNPAYRHGNN-----KQGXXXXXSEDVWSRTAREITRAWVRAVGWLCSPSHSNLWPHMIEVGILGAINTCASSSTLSGDEEGLVILSAALRNLSTATSARSLGGERAAACFGTAKRLLSYCSNQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATMVGELVIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQGYGAGGVNGSGRKDRILVS----------LLNSGEVVDQGQLSVQRSPENAHDAMNGQHQGLQ-----LGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------LEREAMA-SLPAADLSNVSSKSANESAAAGVAPKGAGGDGNNRKGRGDDRTLKHTAARLATVISETSMAARAFSSKPSKAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATR---RTDPSSTKTTSSKHAEGKSNNGGGKGGQRQDADPHTTAGAEQLQHQQ------------------------------QGVRGDGASGIKEVTAAAERAVLDEGGAFEVLTVPDDKWISPDLPPEAGKQQQ 1338
BLAST of mRNA_P-littoralis_Contig67.3.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.620e-16 Identity = 97/208 (46.63%), Postives = 120/208 (57.69%), Query Frame = 1
Query: 1297 DMAADLWVMWQAVVLQLSFVEQYRALIVYHGDGKVFSHLKL--TNDPLSGKSSVMSMAHDRVYKRLIMGTMVNLSCDPSLYEELEGQVQVLREFLSEYEQEASGGHSTGMPLGMISXXXXXXXXXXXXXXXXXXDMDDRGIDEGGXXXXXXXXXXXXXXXXXDASSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPVAGILVGLLC 1914
D +DL MW A VL LS YR LIV HG+G +F +K T+DPL G +++ +R ++ L M + NLSCD L+EELEGQ+ +LREFLSEY+ A XXXXXXXXXXXXXXXXXX XXXXXXXXXXD R RH LCA++++NL S RERL+++PV L LLC
Sbjct: 602 DDGSDLDTMWLAAVLGLSRSAAYRPLIVRHGEGIIFGRIKALSTHDPLLGGGDTLNVTLERRHRELSMAILSNLSCDGELHEELEGQLPLLREFLSEYDAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXDQLPDPRGDPRHLLCAQVIANLLRSAPFRERLARRPVGSALTELLC 793 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig67.3.1 >prot_P-littoralis_Contig67.3.1 ID=prot_P-littoralis_Contig67.3.1|Name=mRNA_P-littoralis_Contig67.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1508bp NYVSIALCNVAAASHCETQQLLPTREDKIAVTGAPHGAPMKEGSGGAQGNback to top mRNA from alignment at P-littoralis_Contig67:22342..33960+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig67.3.1 ID=mRNA_P-littoralis_Contig67.3.1|Name=mRNA_P-littoralis_Contig67.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11619bp|location=Sequence derived from alignment at P-littoralis_Contig67:22342..33960+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig67:22342..33960+ >mRNA_P-littoralis_Contig67.3.1 ID=mRNA_P-littoralis_Contig67.3.1|Name=mRNA_P-littoralis_Contig67.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=4524bp|location=Sequence derived from alignment at P-littoralis_Contig67:22342..33960+ (Pylaiella littoralis U1_48)back to top |