prot_P-littoralis_Contig67.85.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig67.85.3
Unique Nameprot_P-littoralis_Contig67.85.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length572
Homology
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BLAST of mRNA_P-littoralis_Contig67.85.3 vs. uniprot
Match: D7FKR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKR4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.630e-16
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0 
Query:  503 RLNRRVEVLRSLGVNVNFADHVWVISSYSGLRFNRWIEKIVMRDVGVSRRADREVERRMRYYRAILRIT 571
            RL+RRVEVL+SLGV +NF DHVW++SS + LRFN+W+EK++M DVG   R D EVERRM+  RA+LR T
Sbjct:  347 RLSRRVEVLQSLGVQINFTDHVWLVSSATTLRFNKWVEKVLMHDVGAVHRGDAEVERRMKSCRAMLRGT 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig67.85.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKR4_ECTSI1.630e-1663.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 340..372
e-value: 0.01
score: 25.1
coord: 157..188
e-value: 930.0
score: 4.1
coord: 413..444
e-value: 0.025
score: 23.7
coord: 229..261
e-value: 6.2E-4
score: 29.1
coord: 303..335
e-value: 4.4E-5
score: 32.9
coord: 449..481
e-value: 0.44
score: 19.6
coord: 193..224
e-value: 0.0029
score: 26.9
coord: 377..408
e-value: 1.6
score: 17.7
coord: 266..298
e-value: 0.0024
score: 27.1
coord: 486..517
e-value: 0.027
score: 23.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 439..518
e-value: 5.3E-10
score: 38.7
coord: 217..442
e-value: 2.5E-36
score: 125.2
coord: 105..292
e-value: 2.6E-20
score: 72.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 336..518
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 406..518
coord: 133..330
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 368..529
e-value: 2.4E-31
score: 110.9
coord: 102..245
e-value: 7.7E-24
score: 86.2
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 336..518
coord: 133..330
coord: 406..518

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig67contigP-littoralis_Contig67:477267..484516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig67.85.3mRNA_P-littoralis_Contig67.85.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig67 477124..484717 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig67.85.3 ID=prot_P-littoralis_Contig67.85.3|Name=mRNA_P-littoralis_Contig67.85.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=572bp
MRTGWVLGLGLGTHLKAPGELTTFRQPSGENSGPLSLFDGKTSRLQTYPW
TRSIAVRSLGNCHFPKFIREGPHQRPNLSTFSLLAGECVDVNIEDTKAEG
DEGLLREKMKLLADIGLTTAEARHVLGTNPSLVKVQLHTMAVGLLKDKLD
LSSREVAKIIMEKSSILTSPIEKLEHRLSFYFDILRLSKEELKSLVTKDP
TILRLSVANLREKMRFFMEDLGFRRLQLTKLIQRSPQILGNSVENKMRPN
AAFLEDALGVPRHRLKRIVVALPTLLSYSVEDNLRPKVQWLETHLLLREE
QLRKILTRHPQVLSLSVESNLSPKISWLKETFDLDELAVRDMIVKNPSIL
LYSTETGIKRKMVFFTDELGVAEAQVLKIIVRSPKLLSYSMESMRGKQSY
FEEGLRLNGEDVSSFVSRCPQVLGYGVDAMESKLVFLMQGLNASREEARS
IVFKYPHVLNLSVDKNLRGKLDFFTRELCGTQKEVRDAIVGSPTLLGYSL
RNRLNRRVEVLRSLGVNVNFADHVWVISSYSGLRFNRWIEKIVMRDVGVS
RRADREVERRMRYYRAILRIT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf