mRNA_P-littoralis_Contig668.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.31.1
Unique NamemRNA_P-littoralis_Contig668.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5L114_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L114_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.340e-9
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AEQLDAERM----------NVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLR 304
            D SVF DE LM G+DNT   D FP  +   E   A  +          +V  A L P   PF++G   K+VDIN FH SL+HA E LLR
Sbjct:    5 DTSVFTDELLMDGYDNTPYQDFFPAFMPENEAAIAAGVMDGIDGGVGFDVGVAALGPGSSPFSIGSTDKSVDINRFHRSLAHACEPLLR 93
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.430e-9
Identity = 40/111 (36.04%), Postives = 49/111 (44.14%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AEQLDAERM------------------------------NVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D     D FP  L  AE  D   +                              + A A++AP   PF+VGK T T+DINLFH S  H NE L+R T
Sbjct:  931 DMSMFLDVGLMDGKDTVPPGDFFPDALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRET 1041
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5JKD9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.930e-9
Identity = 42/110 (38.18%), Postives = 52/110 (47.27%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAERMNVAN----------------AVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D+    D +P  L   E             +LDA +  VA                 A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:  270 DMSMFLDVGLMTGQDSVPPGDFYPDPLGVCESVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 379
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5KKW9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.960e-9
Identity = 40/111 (36.04%), Postives = 48/111 (43.24%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AEQLDAERM------------------------------NVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D     D FP  L  AE  D   +                              + A A +AP   PF+VGK T T+DINLFH S  H NE L+R T
Sbjct:    2 DMSMFLDVGLMDGKDTVPPGDFFPDALELAESADPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHALATIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRET 112
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.340e-9
Identity = 40/111 (36.04%), Postives = 49/111 (44.14%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AEQLDAERM------------------------------NVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D     D FP  L  AE  D   +                              + A A++AP   PF+VGK T T+DINLFH S  H NE L+R T
Sbjct:  260 DMSMFLDVGLMDGKDTVPPGDFFPDALELAESSDPPHLAFTVQHDDLEVLSGFLSECNEQQAAAPPSLSHALAIIAPGASPFSVGKSTPTIDINLFHASTGHVNEFLMRET 370
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.720e-9
Identity = 42/110 (38.18%), Postives = 53/110 (48.18%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAERMNVAN----------------AVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D+ +  D +P  L   E             +LDA +  VA                 A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:  300 DMSMFLDVGLMNGQDSDQPGDFYPDPLGVCESVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 409
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5J9R8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-8
Identity = 42/110 (38.18%), Postives = 52/110 (47.27%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAERMNVAN----------------AVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D+    D +P  L   E             +LDA +  VA                 A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:   13 DMSMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 122
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.370e-8
Identity = 42/110 (38.18%), Postives = 52/110 (47.27%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAERMNVAN----------------AVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D+    D +P  L   E             +LDA +  VA                 A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:  262 DMSMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 371
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.350e-8
Identity = 41/110 (37.27%), Postives = 53/110 (48.18%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAER----------------MNVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            DMS+F+D  LM G D+    D +P  L   E             +LDA +                ++ A A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:    2 DMSMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVAFAAMQDELDALKDFAAECRVQQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 111
[Close]
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Match: A0A6H5K690_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K690_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.590e-8
Identity = 41/110 (37.27%), Postives = 52/110 (47.27%), Query Frame = 2 
Query:   68 DMSVFVDEDLMAGFDNTKS*DIFPRILS*AE-------------QLDAERMNVAN----------------AVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT 310
            D+S+F+D  LM G D+    D +P  L   E             +LDA +  VA                 A++AP    FTVGKPT T+DINLFH S  H NE L+R T
Sbjct:  157 DISMFLDVGLMNGQDSVPPGDFYPDPLGVCESVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAFTVGKPTSTIDINLFHASTGHVNEFLMRET 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L114_9PHAE5.340e-943.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3I1_9PHAE5.430e-936.04Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JKD9_9PHAE6.930e-938.18Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKW9_9PHAE6.960e-936.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JU31_9PHAE7.340e-936.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KIN4_9PHAE9.720e-938.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J9R8_9PHAE1.320e-838.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCR3_9PHAE1.370e-838.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JT91_9PHAE2.350e-837.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K690_9PHAE4.590e-837.27Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:151976..152285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size311
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791389.487955-UTR-P-littoralis_Contig668:151975..1521531680791389.487955-UTR-P-littoralis_Contig668:151975..152153Pylaiella littoralis U1_48UTRP-littoralis_Contig668 151976..152153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791389.5020814-CDS-P-littoralis_Contig668:152153..1522851680791389.5020814-CDS-P-littoralis_Contig668:152153..152285Pylaiella littoralis U1_48CDSP-littoralis_Contig668 152154..152285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.31.1prot_P-littoralis_Contig668.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 152154..152285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.31.1

>prot_P-littoralis_Contig668.31.1 ID=prot_P-littoralis_Contig668.31.1|Name=mRNA_P-littoralis_Contig668.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
MNVANAVLAPNIRPFTVGKPTKTVDINLFHVSLSHANETLLRAT
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mRNA from alignment at P-littoralis_Contig668:151976..152285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.31.1 ID=mRNA_P-littoralis_Contig668.31.1|Name=mRNA_P-littoralis_Contig668.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=310bp|location=Sequence derived from alignment at P-littoralis_Contig668:151976..152285+ (Pylaiella littoralis U1_48)
TGTTTTCCCTGCTACCGCGGTTGTGCCTGGTGCTGCCTTGACTGTCGTTC
GTGGATTGCAGCAGCCCGACATGAGTGTGTTTGTTGATGAAGACTTAATG
GCAGGTTTTGACAACACCAAGAGTTAGGATATTTTTCCGCGCATTCTGAG
TTAGGCGGAGCAGTTGGATGCAGAACGTATGAATGTAGCGAATGCTGTGC
TTGCCCCCAACATCCGGCCTTTCACTGTCGGCAAGCCGACCAAAACTGTG
GACATTAACCTTTTCCACGTTTCCCTTTCACATGCGAATGAAACCCTTTT
GAGAGCAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig668:151976..152285+

>mRNA_P-littoralis_Contig668.31.1 ID=mRNA_P-littoralis_Contig668.31.1|Name=mRNA_P-littoralis_Contig668.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig668:151976..152285+ (Pylaiella littoralis U1_48)
ATGAATGTAGCGAATGCTGTGCTTGCCCCCAACATCCGGCCTTTCACTGT
CGGCAAGCCGACCAAAACTGTGGACATTAACCTTTTCCACGTTTCCCTTT
CACATGCGAATGAAACCCTTTTGAGAGCAACC
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