mRNA_P-littoralis_Contig668.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.20.1
Unique NamemRNA_P-littoralis_Contig668.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 7.630e-63
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:   66 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 177
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 9.900e-63
Identity = 93/112 (83.04%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW  IFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:   20 SSTEAEYVAMSDGMKEAIFLRYLWKIIFPGCDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 131
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.600e-58
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW  I+P  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  304 SSTEAEYVAMSDGMKEAIFLRYLWKLIYPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 415
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.190e-58
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  465 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.420e-57
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  689 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.000e-56
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct: 1765 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.870e-56
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GM EAIFLRYLW  IF  LDVGCT V EDNVGA++LASNPATTPNSKHIDI+HHFIRERVARGEF+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  452 SSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 3.880e-56
Identity = 86/111 (77.48%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNI 333
            SSTEA+Y A+A+GMKEAIFLRYLW+FIFPD DVGCT++ EDNVGA++LA+NPATTPNSKHID++HHFIRERV RGEF+VV+V S LQHADFLTK LPK+AF  HR+FVMN+
Sbjct:  235 SSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.480e-56
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YV+L++GMKE IFLRYLW+FIF + DVGCTLVHEDNVGA++LASNPATTPNSKHIDI+H  IRERVARGEFR+VHVRS LQ ADFLTKAL K+AFCAHRDFVMN+R
Sbjct:  733 SSTEAEYVSLSDGMKETIFLRYLWSFIFSNRDVGCTLVHEDNVGAIHLASNPATTPNSKHIDIRHQCIRERVARGEFRIVHVRSDLQRADFLTKALSKEAFCAHRDFVMNLR 844
[Close]
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.930e-54
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 SSTEAKYVALAEGMKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDIKHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR 336
            SSTEA+YVA+++GMKEAIFLRYLW FIFP  DVGCT V EDNVGA++LASNPATTPNSK IDI+HHFIRERVARG F+VVHVRS LQ ADFLTK LPK+ FCAHRDFVMNIR
Sbjct:  993 SSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZC8_9PHAE7.630e-6383.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L610_9PHAE9.900e-6383.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE1.600e-5882.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG1_9PHAE2.190e-5883.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE4.420e-5783.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE2.000e-5683.93Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K5L3_9PHAE3.870e-5682.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5Q2_9PHAE3.880e-5677.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN01_9PHAE8.480e-5682.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP2_9PHAE1.930e-5482.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:92822..93209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5217.XP_007000815.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size388
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.01e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size300
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.9413178-UTR-P-littoralis_Contig668:92821..928701680791388.9413178-UTR-P-littoralis_Contig668:92821..92870Pylaiella littoralis U1_48UTRP-littoralis_Contig668 92822..92870 -
1680791388.9719172-UTR-P-littoralis_Contig668:93170..932091680791388.9719172-UTR-P-littoralis_Contig668:93170..93209Pylaiella littoralis U1_48UTRP-littoralis_Contig668 93171..93209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.9594529-CDS-P-littoralis_Contig668:92870..931701680791388.9594529-CDS-P-littoralis_Contig668:92870..93170Pylaiella littoralis U1_48CDSP-littoralis_Contig668 92871..93170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.20.1prot_P-littoralis_Contig668.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 92871..93170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.20.1

>prot_P-littoralis_Contig668.20.1 ID=prot_P-littoralis_Contig668.20.1|Name=mRNA_P-littoralis_Contig668.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MKEAIFLRYLWNFIFPDLDVGCTLVHEDNVGAVYLASNPATTPNSKHIDI
KHHFIRERVARGEFRVVHVRSALQHADFLTKALPKDAFCAHRDFVMNIR*
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mRNA from alignment at P-littoralis_Contig668:92822..93209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.20.1 ID=mRNA_P-littoralis_Contig668.20.1|Name=mRNA_P-littoralis_Contig668.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=388bp|location=Sequence derived from alignment at P-littoralis_Contig668:92822..93209- (Pylaiella littoralis U1_48)
TCGTCGACGGAGGCGAAGTACGTAGCCCTAGCTGAAGGGATGAAGGAGGC
GATTTTCTTGCGTTATCTCTGGAATTTTATCTTTCCGGACCTCGATGTAG
GGTGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTTACCTGGCAAGC
AATCCGGCCACAACCCCTAACTCAAAGCACATCGACATCAAGCACCATTT
CATTCGCGAACGCGTGGCACGAGGGGAGTTCAGGGTAGTTCACGTACGTT
CTGCGTTGCAGCATGCTGATTTCTTGACCAAAGCACTGCCCAAAGACGCT
TTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTGATTTGTGCGTGT
TGCGTTGTTCGCCCTGAGTTTCTAGCCGTTCTGCGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig668:92822..93209-

>mRNA_P-littoralis_Contig668.20.1 ID=mRNA_P-littoralis_Contig668.20.1|Name=mRNA_P-littoralis_Contig668.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig668:92822..93209- (Pylaiella littoralis U1_48)
ATGAAGGAGGCGATTTTCTTGCGTTATCTCTGGAATTTTATCTTTCCGGA
CCTCGATGTAGGGTGCACTTTGGTCCACGAGGACAACGTCGGGGCCGTTT
ACCTGGCAAGCAATCCGGCCACAACCCCTAACTCAAAGCACATCGACATC
AAGCACCATTTCATTCGCGAACGCGTGGCACGAGGGGAGTTCAGGGTAGT
TCACGTACGTTCTGCGTTGCAGCATGCTGATTTCTTGACCAAAGCACTGC
CCAAAGACGCTTTTTGCGCGCACCGTGACTTTGTGATGAACATTCGGTGA
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