mRNA_P-littoralis_Contig668.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig668.10.1
Unique Name	mRNA_P-littoralis_Contig668.10.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5L8Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 9.990e-34
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGVLFGTP++NKGKRK+ RL+LEPPDFPIP  GGG   KRY LQFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:   63 EWGDGLGGVLFGTPAQNKGKRKKARLELEPPDFPIPDHGGGTQSKRYTLQFKVNAVRYSQRNLKGAQGPGGTVGV 137

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5JRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS3_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.750e-33
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGVLFGTP++NKGKRK+GRL+LEPPDFPIP  GGG  RKRY LQFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:   26 EWGDGLGGVLFGTPAQNKGKRKKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGV 100

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5K8J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.220e-33
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+G GG LFGTP++NKGKRK+G+L+LEPPDF IP  GGG  RKRYPLQFKVNAVRYS+K VKGAQG GGTVG+
Sbjct:  123 EWGDGFGGALFGTPAQNKGKRKKGQLELEPPDFEIPNFGGGSQRKRYPLQFKVNAVRYSQKRVKGAQGPGGTVGI 197

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5J6V1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.610e-32
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+G GG LFGTP++NKGKRK+G+L+LEPPDF IP  GGG  RKRYPLQFKVNAVRYS+K VKGAQG GGTVG+
Sbjct:  123 EWGDGFGGALFGTPAQNKGKRKKGQLELEPPDFEIPNFGGGSQRKRYPLQFKVNAVRYSQKRVKGAQGPGGTVGI 197

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5KCX1_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 6.240e-32
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGV FGTP++NKGKRK+GRL+LEPPDFPIP  GGG  RKRY LQFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:   85 EWGDGLGGVRFGTPAQNKGKRKKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGV 159

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5J8Q8_9PHAE (TRAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.200e-32
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGVLF TP++NKGKRK+GRL+LEPPDFPIP  GGG  RKRY LQFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:  363 EWGDGLGGVLFSTPAQNKGKRKKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGV 437

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5JEJ4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ4_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.330e-31
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGVLFGTP++NKGKRK+GRL+LE PDFPIP  GGG  RKRY LQFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:  203 EWGDGLGGVLFGTPAQNKGKRKKGRLELESPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGV 277

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5KLV3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.090e-31
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GL GVL GTP++NKGKRK+GRL+LEPPDFPIP  GGG  RKRY  QFKVNAVRYS++ +KGAQG GGTVGV
Sbjct:   97 EWGDGLSGVLVGTPAQNKGKRKKGRLELEPPDFPIPDHGGGTQRKRYTSQFKVNAVRYSQRKLKGAQGPGGTVGV 171

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5KQE0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.400e-31
Identity = 55/75 (73.33%), Postives = 68/75 (90.67%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            EWG+GLGGVLFGTP++NKG+RK+G+L+LEPPDF IP LGGG  RK +PL+FKV+AVRYS+K +KGAQG GGTVG+
Sbjct:    8 EWGDGLGGVLFGTPAQNKGRRKKGQLELEPPDFAIPELGGGRQRKHHPLKFKVDAVRYSQKRLKGAQGPGGTVGI 82

[Close]

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Match: A0A6H5JSX7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.150e-30
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1

Query:   10 EWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRYPLQFKVNAVRYSKKIVKGAQGAGGTVGV 234
            E G+GLGGVLFGTP+ENK KRK+G+L+LEPP FPIP  GGG  RKRYPL+FKV+AVRYS++ VKGAQG  GTVG+
Sbjct:    8 ERGDGLGGVLFGTPAENKNKRKKGQLELEPPGFPIPEFGGGSQRKRYPLKFKVDAVRYSQRRVKGAQGPDGTVGI 82

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig668.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L8Q8_9PHAE	9.990e-34	77.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRS3_9PHAE	1.750e-33	80.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8J2_9PHAE	6.220e-33	77.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J6V1_9PHAE	2.610e-32	77.33	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KCX1_9PHAE	6.240e-32	78.67	DDE-1 domain-containing protein n=4 Tax=Ectocarpus...	[more]
A0A6H5J8Q8_9PHAE	7.200e-32	78.67	TRAM domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5JEJ4_9PHAE	1.330e-31	78.67	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KLV3_9PHAE	3.090e-31	76.00	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KQE0_9PHAE	8.400e-31	73.33	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JSX7_9PHAE	1.150e-30	73.33	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig668	contig	P-littoralis_Contig668:35578..35811 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	235
Hectar predicted targeting category	other localisation
Exons	1
Cds size	234

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791388.5439193-CDS-P-littoralis_Contig668:35577..35811	1680791388.5439193-CDS-P-littoralis_Contig668:35577..35811	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig668 35578..35811 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig668.10.1	prot_P-littoralis_Contig668.10.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig668 35578..35811 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig668:35578..35811+
coding sequence from alignment at P-littoralis_Contig668:35578..35811+

protein sequence of mRNA_P-littoralis_Contig668.10.1

>prot_P-littoralis_Contig668.10.1 ID=prot_P-littoralis_Contig668.10.1|Name=mRNA_P-littoralis_Contig668.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
ETDEWGNGLGGVLFGTPSENKGKRKRGRLDLEPPDFPIPALGGGEHRKRY
PLQFKVNAVRYSKKIVKGAQGAGGTVGV

mRNA from alignment at P-littoralis_Contig668:35578..35811+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig668.10.1 ID=mRNA_P-littoralis_Contig668.10.1|Name=mRNA_P-littoralis_Contig668.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig668:35578..35811+ (Pylaiella littoralis U1_48)
GAAACCGACGAGTGGGGAAATGGGTTGGGGGGCGTCCTCTTCGGCACACC
TTCGGAGAACAAGGGCAAGAGGAAGAGAGGGCGGCTGGACCTGGAGCCGC
CGGACTTTCCCATCCCCGCCCTCGGTGGTGGTGAACACAGAAAGCGCTAC
CCTCTGCAGTTCAAGGTGAATGCGGTGAGATACTCGAAGAAGATTGTCAA
GGGGGCACAGGGGGCGGGGGGGACGGTGGGCGTA

Coding sequence (CDS) from alignment at P-littoralis_Contig668:35578..35811+

>mRNA_P-littoralis_Contig668.10.1 ID=mRNA_P-littoralis_Contig668.10.1|Name=mRNA_P-littoralis_Contig668.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig668:35578..35811+ (Pylaiella littoralis U1_48)
GAAACCGACGAGTGGGGAAATGGGTTGGGGGGCGTCCTCTTCGGCACACC
TTCGGAGAACAAGGGCAAGAGGAAGAGAGGGCGGCTGGACCTGGAGCCGC
CGGACTTTCCCATCCCCGCCCTCGGTGGTGGTGAACACAGAAAGCGCTAC
CCTCTGCAGTTCAAGGTGAATGCGGTGAGATACTCGAAGAAGATTGTCAA
GGGGGCACAGGGGGCGGGGGGGACGGTGGGCGTA