mRNA_P-littoralis_Contig668.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.12.1
Unique NamemRNA_P-littoralis_Contig668.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:36056..38003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categorymitochondrion
Exons3
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.394458-CDS-P-littoralis_Contig668:36055..362821680791388.394458-CDS-P-littoralis_Contig668:36055..36282Pylaiella littoralis U1_48CDSP-littoralis_Contig668 36056..36282 -
1680791388.4062052-CDS-P-littoralis_Contig668:36787..370151680791388.4062052-CDS-P-littoralis_Contig668:36787..37015Pylaiella littoralis U1_48CDSP-littoralis_Contig668 36788..37015 -
1680791388.4162445-CDS-P-littoralis_Contig668:37915..379881680791388.4162445-CDS-P-littoralis_Contig668:37915..37988Pylaiella littoralis U1_48CDSP-littoralis_Contig668 37916..37988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.4292212-UTR-P-littoralis_Contig668:37988..380031680791388.4292212-UTR-P-littoralis_Contig668:37988..38003Pylaiella littoralis U1_48UTRP-littoralis_Contig668 37989..38003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.12.1prot_P-littoralis_Contig668.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 36056..37988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.12.1

>prot_P-littoralis_Contig668.12.1 ID=prot_P-littoralis_Contig668.12.1|Name=mRNA_P-littoralis_Contig668.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MLRSAKFASAIKSMATSLSPHNQQGCNAGTTSFLPACLKPPRQQHHQQAQ
PQLQHLQDRYPQLGRAKFHGAAEQPLSPRRRMGSQQSAGTTTRSSPQGLA
GFSWRVSRASRNTSRESLLLAGLKPRQQHHQDQPQPQPQHLQDQPQHLQD
QPQPQPQRQQGRCPPRRRPATRSSS*
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mRNA from alignment at P-littoralis_Contig668:36056..38003-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.12.1 ID=mRNA_P-littoralis_Contig668.12.1|Name=mRNA_P-littoralis_Contig668.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1948bp|location=Sequence derived from alignment at P-littoralis_Contig668:36056..38003- (Pylaiella littoralis U1_48)
CAGCACGCGCCAGGGATGCTGAGGAGTGCGAAATTCGCGAGCGCCATCAA
AAGCATGGCTACGTCACTTTCTCCGCACAACCAACAAGGTATGCTGTGTG
TGCGTGGTGTACCTACCGTTGTACGTTTCATGTGTTTCAGGAAATAAGTT
TTTTTTCTCACATTGCAAATACATCATGCGCACCTGGCTTATTTTTATTT
TTATTTTTATTTTTATTATTTTCCTCATTCCATTTACAGCAGACAGTTAA
AACCAGCACTCTGTTTTCATTTTTAAGAGCATCGATGTGGTCCTCAAATG
ATTTTGAACATAGCGGACAGCATAACGGAGGGTTTCTCCCCGATATTTTT
GCTGTTTGACTTACCCGTGGCAGAACTCCTGCGATGGCCTACTGATTTTT
TATTTTCAGGTGTTTTTGTACCTCGGTCAGAACTAATAAACCCCCGGAGT
CCTGTCTCAGGGTAGTGTTCCTTCTTTGATGTTGCAGTTTCATATCAAAG
AAGGTCAACACAGGCAAGTTAGCACAGGAGCTTTTGTTGTTGTTGTTGTT
GTTGTTGTTTTTGTACGTAAGATTAAGATTATACAACAGCGGCAGCAGCA
GCAGAGGGTGTGTTTTGTGTTTTGTGCGTTTGAGCCGTTGTGAATCGCCC
CTATTTTAAAGTCCCCCCCCCCAAACGAAAAACAGCAGTCGGCTATTGTA
GCAACGCGGTCAATGCTTTGTCAACAGCAGTAGACAACACAACCACCCGT
ATATACCTACTACAGTAGAACCCCGATGTGCAAAAAATACATGCAGTAAG
AGAGAACACAATAATGAAAATAATCCAACACCCTGCGCGTACCTACCTAT
GTACTTCGTATGTATGTTGGCACACTACTGTTTCTATACTTGTCCGCATT
GTTACTAAAGACACACATATTTTTCGTGGTGTGGTTTCGATGTCCAACGC
CTTGTCCCACGACCATGCTTTTTTTGTTTATTTGCCAGGATGCAACGCCG
GAACCACCAGCTTCCTGCCGGCGTGTCTCAAGCCGCCCCGCCAACAACAC
CACCAGCAGGCTCAGCCACAGCTACAGCACCTGCAGGACCGGTACCCACA
GCTGGGACGTGCGAAATTCCATGGTGCAGCAGAACAGCCTTTGTCTCCTC
GGCGGCGGATGGGAAGCCAGCAGTCTGCGGGCACCACAACAAGATCGTCC
CCGCAGGGCCTGGCAGGTACGCTGTGTGTGTGTGTGTGGTGTACGGTGTA
CGTTTCGTGTGTGTCGTGGTGTATACATTCCACCGAAACACCCATAAGTG
AGATGATACAAACGGCAGTAGCAGCAGCAGCGAAGGGTGTGGTCGTTCTT
CTAATTTGGCTATATTTTTTTCCCCCCAAAAAAAAACACACAGCACACAG
CCGGCTACCGCGGTCGATGCTATATCAACAGTAGTAGACACACGAATACA
CTCACGTAGTAGAATCCTTGGGGGGAGTTTTACGGTATTTTTTGCACGCA
CCTCTCCTTATAACCCGTAGTTCAAAAATGCCCTGCAGTAAAATTCTACC
ATACGTATGAAAATGTATCCATTACTTTCAACCCTGCGTGTATTGGGCGC
ACTGCTGTTCCTTGATGCTCGTCCGCACTGCTGTTGCTGATCCACACGCA
TGTTTTGTTTTGTGGTTTAGATGCCCAACGCCTTGTCCCCCGACCATGTT
TTTTTTTGTTGAATTTTGCAGGCTTTTCCTGGCGGGTCTCCCGCGCCTCC
CGCAACACCAGCAGAGAAAGCCTCCTCCTGGCGGGCCTCAAGCCCCGCCA
GCAACACCATCAGGATCAGCCACAGCCACAGCCACAGCATCTGCAGGATC
AGCCACAGCACCTGCAGGATCAGCCACAGCCGCAGCCACAGCGCCAACAG
GGCCGGTGCCCACCGAGACGACGGCCGGCGACACGATCATCGTCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig668:36056..38003-

>mRNA_P-littoralis_Contig668.12.1 ID=mRNA_P-littoralis_Contig668.12.1|Name=mRNA_P-littoralis_Contig668.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig668:36056..38003- (Pylaiella littoralis U1_48)
ATGCTGAGGAGTGCGAAATTCGCGAGCGCCATCAAAAGCATGGCTACGTC
ACTTTCTCCGCACAACCAACAAGGATGCAACGCCGGAACCACCAGCTTCC
TGCCGGCGTGTCTCAAGCCGCCCCGCCAACAACACCACCAGCAGGCTCAG
CCACAGCTACAGCACCTGCAGGACCGGTACCCACAGCTGGGACGTGCGAA
ATTCCATGGTGCAGCAGAACAGCCTTTGTCTCCTCGGCGGCGGATGGGAA
GCCAGCAGTCTGCGGGCACCACAACAAGATCGTCCCCGCAGGGCCTGGCA
GGCTTTTCCTGGCGGGTCTCCCGCGCCTCCCGCAACACCAGCAGAGAAAG
CCTCCTCCTGGCGGGCCTCAAGCCCCGCCAGCAACACCATCAGGATCAGC
CACAGCCACAGCCACAGCATCTGCAGGATCAGCCACAGCACCTGCAGGAT
CAGCCACAGCCGCAGCCACAGCGCCAACAGGGCCGGTGCCCACCGAGACG
ACGGCCGGCGACACGATCATCGTCGTAG
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