mRNA_P-littoralis_Contig668.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig668.4.1
Unique NamemRNA_P-littoralis_Contig668.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig668.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig668contigP-littoralis_Contig668:16713..18072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.3423243-CDS-P-littoralis_Contig668:16712..171201680791388.3423243-CDS-P-littoralis_Contig668:16712..17120Pylaiella littoralis U1_48CDSP-littoralis_Contig668 16713..17120 +
1680791388.3571405-CDS-P-littoralis_Contig668:17898..180721680791388.3571405-CDS-P-littoralis_Contig668:17898..18072Pylaiella littoralis U1_48CDSP-littoralis_Contig668 17899..18072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig668.4.1prot_P-littoralis_Contig668.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig668 16713..18072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig668.4.1

>prot_P-littoralis_Contig668.4.1 ID=prot_P-littoralis_Contig668.4.1|Name=mRNA_P-littoralis_Contig668.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
MSGRGGRGVVTTGPPTGGAHENGRRDTAARFTGVESYADSHGHASVMATA
AETAPKAERLADQSIGSRRAQRRAKEAMALVASAKAVSGAVTPSGARTGS
DIKGAAAGGAGAGARAAAVAPFQGTAEIFDFGMELKQQQEQERLLNFYKQ
QQQQRLKATVPLSGMPVPRQHLPVGKMSKEELEMDREEQAEQKQ
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mRNA from alignment at P-littoralis_Contig668:16713..18072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig668.4.1 ID=mRNA_P-littoralis_Contig668.4.1|Name=mRNA_P-littoralis_Contig668.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1360bp|location=Sequence derived from alignment at P-littoralis_Contig668:16713..18072+ (Pylaiella littoralis U1_48)
ATGAGCGGGCGGGGTGGGCGGGGAGTGGTCACGACTGGTCCACCTACGGG
CGGCGCCCATGAGAATGGAAGGCGTGATACTGCCGCTAGGTTTACCGGGG
TGGAGTCGTACGCGGATTCCCATGGGCACGCGTCGGTAATGGCAACTGCG
GCGGAAACAGCACCCAAGGCGGAGAGGCTCGCCGACCAGAGTATTGGAAG
TCGCCGGGCCCAACGTCGGGCAAAGGAAGCGATGGCGTTGGTGGCGTCGG
CCAAGGCAGTCTCCGGGGCGGTTACACCCTCAGGGGCGCGGACTGGCAGT
GATATAAAAGGGGCAGCCGCTGGAGGGGCAGGGGCTGGAGCGAGAGCGGC
CGCTGTTGCTCCTTTTCAAGGCACAGCTGAAATTTTTGACTTTGGCATGG
AGCTCAAGGTGACCATCCTTCAGTTGCTGTTGTTGGGAACAAGTAGGGGG
GGGTGAAATGCGCGTTTCGGTCCATGTCGTTTTGACACATTCTTCTATCT
GGCAGGCAGATAATCGTTGTTGAGAGCTTACTGTTTGAAGCATGTGTCAC
GTGTTTCGGTTATGGGTAAGACATGGTTCAGGTTGGTGTGCATTCGATAG
GTAGACCTTGAACCACACGTTCAGTTTTTGCCCCACGCATGGGCGTCGAT
TGAACTCATTCCCCAACAATAAAACTCCCCGTCAGCGGTGCGGTGATGGA
ATAACGGCGCTAGCCACGGCGATCCGATCAGCTTCGCGTCGCTGACGTTT
CCAGCAACAGACTTGTAGTTTCAGGATCAGCCTTCTCGGCAATGAAAGAC
GGTAAAACAAAACACTTCAAGTTCGTGGCGATCGAAAATATTTTCGTAGG
CTAGTATGTGAGGTATTTATGGCGATCAAATGGAAATCATACGTGGTGGA
AAGTTTCGTGGAACATTTAGCAAAAGGAAAATAAAGTTGAGCTAGATTTC
CGTTGGTGTATCCTAAGGGTAGGCCGATCGCTTGAGGAGATAAGTGACGA
GTTCAGACATTTGCTTCTTGCCGCGGCCACCGTAACAAGACCGACTTGCA
CGCGATATGAAGCCGCCACGCGTGGGCTGTGAATGTCGTCCGGAGCTTCG
GTGTGCGATTGACTATCAGCTCCTGAACTCCCTCACTATTCTCTCCTTAC
CATCTTTTTCACTGGCTTCTGTGTCGGCACGAGTAGCAGCAGCAGGAGCA
GGAGCGTCTGCTGAATTTCTACAAGCAACAGCAGCAGCAGCGCTTGAAGG
CGACCGTTCCGCTTTCAGGAATGCCGGTTCCTCGCCAACACCTACCGGTC
GGCAAGATGAGCAAGGAGGAGCTCGAGATGGACAGGGAAGAGCAGGCGGA
GCAGAAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig668:16713..18072+

>mRNA_P-littoralis_Contig668.4.1 ID=mRNA_P-littoralis_Contig668.4.1|Name=mRNA_P-littoralis_Contig668.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig668:16713..18072+ (Pylaiella littoralis U1_48)
ATGAGCGGGCGGGGTGGGCGGGGAGTGGTCACGACTGGTCCACCTACGGG
CGGCGCCCATGAGAATGGAAGGCGTGATACTGCCGCTAGGTTTACCGGGG
TGGAGTCGTACGCGGATTCCCATGGGCACGCGTCGGTAATGGCAACTGCG
GCGGAAACAGCACCCAAGGCGGAGAGGCTCGCCGACCAGAGTATTGGAAG
TCGCCGGGCCCAACGTCGGGCAAAGGAAGCGATGGCGTTGGTGGCGTCGG
CCAAGGCAGTCTCCGGGGCGGTTACACCCTCAGGGGCGCGGACTGGCAGT
GATATAAAAGGGGCAGCCGCTGGAGGGGCAGGGGCTGGAGCGAGAGCGGC
CGCTGTTGCTCCTTTTCAAGGCACAGCTGAAATTTTTGACTTTGGCATGG
AGCTCAAGCAGCAGCAGGAGCAGGAGCGTCTGCTGAATTTCTACAAGCAA
CAGCAGCAGCAGCGCTTGAAGGCGACCGTTCCGCTTTCAGGAATGCCGGT
TCCTCGCCAACACCTACCGGTCGGCAAGATGAGCAAGGAGGAGCTCGAGA
TGGACAGGGAAGAGCAGGCGGAGCAGAAGCAG
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