mRNA_P-littoralis_Contig117.31.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A6H5KQ82_9PHAE (4HBT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ82_9PHAE) HSP 1 Score: 558 bits (1437), Expect = 9.550e-198 Identity = 283/361 (78.39%), Postives = 309/361 (85.60%), Query Frame = 3
Query: 9 MGVAKGVSESLRCPVGRGMLEFFTESVWQMGFARSLGAYDGMLVTSLGQQGSMLEAVYTIPANICIAGGTAGGGGGAFLPCGVTTALFDEVSTLAMVIADKKYRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKYLPMGRGWDFTANPLLFPLAHKWQMRQHEKWLEDPQRTKGIPSGEHLLDMFKLENLARYDG--DKKFFGSASEPSNGVSKQEEQVEEDEGGFRSAEADVLVTRRMCNYIPGTMHGGAIAVAAEEIARRCPPAPLPMAPVPIPGNPRVRYMEVHYMSPIKRRAGLAAVPVAAGAGRNITRVGLSEAGGVEGGVLSAEAVLHW 1085
M +AKGVSE+LR PV RGMLE+FTE VWQ+GFARSLG YDGMLVTS+GQQGSMLEAVYTIP NIC+ GGT GGGGG LPCGVTTALFDEVSTLAM+IAD+ RPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVK+LPMGR WD + P +FP A K RQH +WL DP+R+KGIP+GEHLLDMFKLE R G D+++FG A+ V EEQ E EGGFRSAEA+ LVTRRMCNY+PGTMHGGAIAVAAEEI+RRCPPAP PM VPIPGNPRV+YMEVHYMSPIKRRAGLAAV A+G G+N+TRVGLSEAGG EGGVLSAEAVL W
Sbjct: 1 MRIAKGVSEALRSPVRRGMLEYFTEHVWQVGFARSLGVYDGMLVTSVGQQGSMLEAVYTIPENICVTGGTLGGGGGCVLPCGVTTALFDEVSTLAMMIADRTCRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKHLPMGRAWDLSTIPFVFPYARKLSERQHAQWLRDPERSKGIPTGEHLLDMFKLEQFERVGGGGDEEYFGGATSSGPQV---EEQAGEVEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEISRRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGIGKNVTRVGLSEAGGTEGGVLSAEAVLLW 358
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: D7FYV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV9_ECTSI) HSP 1 Score: 376 bits (965), Expect = 9.410e-128 Identity = 194/257 (75.49%), Postives = 211/257 (82.10%), Query Frame = 3
Query: 351 MFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKYLPMGRGWDFTANPLLFPLAHKWQMRQHEKWLEDPQRTKGIPSGEHLLDMFKLENLARYDG--DKKFFGSASEPSNGVSKQEEQVEEDEGGFRSAEADVLVTRRMCNYIPGTMHGGAIAVAAEEIARRCPPAPLPMAPVPIPGNPRVRYMEVHYMSPIKRRAGLAAVPVAAGAGRNITRVGLSEAGGVEGGVLSAEAVLHWGNE-TGGGVR 1112
MFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVK+LPMGR WD + NP +FP A K RQH +WL DP+R+KGIP+GEHLLDMFKLE R G D+ +FG A+ V EEQ +DEGGFRSAEA+ LVTRRMCNY+PGTMHGGAIAVAAEEIARRCPPAP PM VPIPGNPRV+YMEVHYMSPIKRRAGLAAV A+ G+N+TRVGLSEAGG EGGVLSAEAVL W G GVR
Sbjct: 1 MFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKHLPMGRAWDLSTNPFVFPYARKMSERQHAQWLRDPERSKGIPTGEHLLDMFKLEQFERVGGGGDEAYFGVATSSDPQV---EEQAGDDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASEIGKNVTRVGLSEAGGTEGGVLSAEAVLLWSQRGEGRGVR 254
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A836CMK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK8_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.640e-23 Identity = 86/280 (30.71%), Postives = 129/280 (46.07%), Query Frame = 3
Query: 315 YRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYRED-GKLAARGRHVKYLPMGRGWDFT-ANPLLFPLAHKWQMRQHEKWLEDPQ--------------RTKGIPSGEHLLDM-----FKLENLARYDGDKKFFGSASEPSNGVSKQEEQVEEDEGGFRSAEADVLVTRRMCNYIPGTMHGGAIAVAAEEIARRCPPAPLPMAPVPIPGNPR-VRYMEVHYMSPIKRRAGLAAVPVAAGAGRNITRVGLSEAGGVEGGVLSAEAVLHWG 1088
+RPG++++L+ MF PG+++ +SR K G LGY E E G L ARGRHVKYLPMGR WD +PLL PLA R + + +P KG+P GE L+ +L+ G+ GSA + + A++++T ++ N++ G+ HGGAI AAE++A AP + G P +++ME Y + K+RA L A G G S+ + GG+ A + + WG
Sbjct: 155 HRPGLTVTLTTEMFRKARPGDKLRLESRLTKGGKALGYLEMVAINEACGSLVARGRHVKYLPMGRQWDLVMGSPLLAPLALAMHERDMTRRMANPMWMKXXXXXXXXXXXXXKGVPEGETLVQQVAPLNLQLDTTLEAGGEHGASGSAQQRGS--------------------AEIIITPQLFNFM-GSFHGGAICAAAEQMAAAT-------APAEVDGKPTWIQHMETQYFTAQKKRAALTGEYRAGG-----LAAGCSDVTFLSGGLKMAGSRMQWG 401
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A4D9CYT7_9STRA (4HBT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYT7_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.850e-22 Identity = 93/308 (30.19%), Postives = 138/308 (44.81%), Query Frame = 3
Query: 75 FTESVWQMGFARSLGAYDGMLVTSLGQQGSMLEAVYTIPANICIAGGTAGGGGGAFLPCGVTTALFDEVSTLAMVIADKKYRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMY-REDGKLAARGRHVKYLPMGRG--WDFTANPLLFPLAHKWQMRQHEKWLEDPQRTKGIPSGEHLLDMFKLENLARYDGDKKFFGSASEPSNGVSKQEEQVEEDEGGFRSAEADVLVTRRMCNYIPGTMHGGAIAVAAEEIARRCPPAPLPMAPVPIPGN---PRVRYMEVHYMSPIKRRAGLAA 980
FT+ + FA +L D +L ++G LE + I +C GG +L GV TA+FDE+ST A ++ D+ +RPGVS++L + V PG + K+ K+G L + + +L A G+H KYLPM W+ PLL+P+ K + + + +R + D F L+NL P N K +E+ ++ A + V R CN + MHGGA+AVAAEEIA L +A PR R + +HY+ R LAA
Sbjct: 23 FTQLFHSINFAHTLQVSDAVLERYDAKKG--LETTHEITKYLCRTDE-----GGTYLSAGVITAVFDEISTAACILQDRTHRPGVSVALDVEVMANVTPGRTLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWNMAFTPLLYPIVRKSLLGLTRRHVATGERVN-TQDASSIFDHFPLDNLT--------------PGNESDKGDERQR-----LQATRASLHVKPRHCNGL-FKMHGGALAVAAEEIAL------LDVAARKKESTSQAPRARALSLHYLQANDRVVDLAA 296
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A482STT1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STT1_9ARCH) HSP 1 Score: 89.0 bits (219), Expect = 3.350e-16 Identity = 69/237 (29.11%), Postives = 112/237 (47.26%), Query Frame = 3
Query: 264 ALFDEVSTLAMVIADKKYRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKYLPMGRGWDFTANPLLFPLA-HKWQMRQHEKWLEDPQRTKGIPSGEHLLDMFKLENLARYDGDKK----FFGSASEPSNGVSKQEEQVEEDEGGFRSAEADVLVTRRMCNYIPGTMHGGAIAVAAEEIARRCPPAPLPMAPVPIPGNPRVRYMEVHYMSPIK 959
ALFDE+ST A+++ DK YR GVS+ L+ + P + E V + K+G LG+ M ++G L A+G+H+K+LPMG WD ++P + P+A + +Q+ + +K+ D +FK + +K+ F + EPS+ + +++ + V V M N + G MHGGA A EE + V MEV Y+SP++
Sbjct: 68 ALFDELSTDALIVTDKNYRGGVSVHLTTELIKPASLNEDVVIHTTADKIGKVLGFCSMEMRSKEGTLLAKGKHIKFLPMGWLWDLVSHPAILPIALYFYQLFRGKKFKTDVDEI-----------LFKPRVVEDNKDEKEIASVFSALSLEPSSSDNNEKDSYYK-----------VRVKSFMKNRL-GAMHGGAAAAVIEEACEVYLNTYRAAEQQNVEKKLYVEKMEVRYLSPMR 281
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A7S3HAL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAL1_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.710e-11 Identity = 40/122 (32.79%), Postives = 63/122 (51.64%), Query Frame = 3
Query: 306 DKKYRPGVSISLSCHMFHPVAPGERVTFKSRGLKMGARLGYGEASMYREDGKLAARGRHVKYLPMGRGWDFTANPLLFPLAHKWQMRQHEKWLEDPQRTKGIPSGEHLLDMFKLENLARYDG 671
D+K+RPGVS+ L + V G+ V+ + K+G L + + +DG L A+G+H+K+LPMG + +PL+ P W + +E Q+ KG P G L D F + L +G
Sbjct: 2 DRKHRPGVSVHLETEVVKSVCAGDEVSILTHTDKIGNTLAFSTMEILDKDGALVAKGKHIKFLPMGTHFSVITHPLVLP----WTLNFYEML----QKRKGAPQG--LADHFTGKKLPLPEG 113
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Match: A0A7S2UIG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIG7_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 9.910e-8 Identity = 56/182 (30.77%), Postives = 80/182 (43.96%), Query Frame = 3
Query: 99 GFARSLGAYDGMLVTSL------GQQGSMLEAVYTIPANICIAGGTAGGGGGAFLPCGVTTALFDEVSTLAMVIADKKYRPGVSISLSCHMF-----------HPVAPGERVTFKSRGLKMGARLGYGEASMYR-EDGKLAARGRHVKYLPMGRGWDFTANPLLFPLAHKWQMRQHEKWLED 590
GF R+LG ++ L S L YTIP + GG +P A+FDEV+T A+V D+K RPG+SI+LS + + G+ V ++ +K G L + EA G + GRH KYLPM ++ PL FPL + R K+ +D
Sbjct: 23 GFGRALGTDPTKVLHHLEDLVHYNDSSSTLTFKYTIPPHAVRRGGE--------MPLSGFLAVFDEVTTWAIVAQDRKRRPGLSITLSAQVGPATTXXXXTARRGIQAGDTVQINAKVVKSGKVLAFTEAEAIDVTTGDVICTGRHTKYLPMPFLFELGLGPL-FPLVKMYTNRLPPKYNDD 195 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.31.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig117.31.2 >prot_P-littoralis_Contig117.31.2 ID=prot_P-littoralis_Contig117.31.2|Name=mRNA_P-littoralis_Contig117.31.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=372bp MGVAKGVSESLRCPVGRGMLEFFTESVWQMGFARSLGAYDGMLVTSLGQQback to top mRNA from alignment at P-littoralis_Contig117:86257..90310- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig117.31.2 ID=mRNA_P-littoralis_Contig117.31.2|Name=mRNA_P-littoralis_Contig117.31.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4054bp|location=Sequence derived from alignment at P-littoralis_Contig117:86257..90310- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig117:86257..90310- >mRNA_P-littoralis_Contig117.31.2 ID=mRNA_P-littoralis_Contig117.31.2|Name=mRNA_P-littoralis_Contig117.31.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1116bp|location=Sequence derived from alignment at P-littoralis_Contig117:86257..90310- (Pylaiella littoralis U1_48)back to top |