mRNA_P-littoralis_Contig667.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig667.19.1
Unique NamemRNA_P-littoralis_Contig667.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: UPI00106C72A9 (putative phytanoyl-CoA dioxygenase n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C72A9)

HSP 1 Score: 221 bits (562), Expect = 1.690e-66
Identity = 114/279 (40.86%), Postives = 161/279 (57.71%), Query Frame = 1
Query:    4 IQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHATA----PWVGTSKDWYKLSVEDVAWYK-GQGCVDTLVTCPKGGLVLWDSRAIH----ANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPNRMRL 813
            I  L T+GY VV  VLS  ECDH ++  WEWL  LG+GI R +P TW ++RWP S+ + +IQ Y IGHAPF W  R N NV+ VF  +WGT +L+TSF+ +C++RP E+ + +      +SW H DQS       P   G+ C+QG +NLE +   D  F    GSH LH           +  D+  +S +D+ W +  +G V T +  PKG  V++DSR +H    AN    NP +RYT ++CMTPR+    +  + R  AF N + T+HWP+ + L
Sbjct:   73 IHQLNTHGYAVVPNVLSSQECDHIIEQAWEWLFKLGTGINRGDPKTWTNERWP-SNFNGIIQRYRIGHAPFIWKARTNPNVIGVFKEIWGTGELLTSFDAMCILRPAEMVEDL---EYTQSWFHTDQS-------PKKKGFHCVQGVLNLEEASTQDAGFACYPGSHSLHQELFQRNNEYNSEMDFNIISKDDLEWVEHNKGLVPTRIPAPKGSFVVFDSRLLHCNVPANVPRQNPRWRYTLYICMTPRAWSDQNTLQARVKAFRNQQMTTHWPHHLGL 340          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: A0A6S7K192_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K192_PARCT)

HSP 1 Score: 218 bits (554), Expect = 2.460e-65
Identity = 113/279 (40.50%), Postives = 157/279 (56.27%), Query Frame = 1
Query:    4 IQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHATAPW----VGTSKDWYKLSVEDVAWY-KGQGCVDTLVTCPKGGLVLWDSRAIH----ANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPNRMRL 813
            I  L  +GY VV  VL+P +CDH +D  WEWL  LG+GI+R + STW +DRWP    + +IQ Y IGHAPF W  R N NV+ VF  +WGT +L+TSF+ + ++RP  +   +   S   SW H DQS       P   G+ C+QG +NLE +   D  F    GSH LH           T+ D+  +S ED+ W  + +G V T +  PKG   ++DSR +H    A     NP +RYT ++CMTPR+    +  + R +AF N R T+HWP+ + L
Sbjct:   70 INQLNVHGYAVVPNVLAPPQCDHIIDKAWEWLAELGTGIQRNDSSTWTNDRWPKHF-NGIIQRYRIGHAPFVWQARTNSNVIGVFEKIWGTNELLTSFDAMGILRPAVMVTDLEHTS---SWFHTDQS-------PKKEGFHCVQGVLNLEEASIEDAGFTCYPGSHKLHTELFQRNNDYDTTMDFNTISKEDLHWVERDKGLVPTRIPAPKGSFTIFDSRLLHCTVPAKVPRENPRWRYTLYICMTPRAWADKNTLQARVEAFRNQRMTTHWPHHVGL 337          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: N1Q6G6_PSEFD (Uncharacterized protein n=3 Tax=Pseudocercospora TaxID=131324 RepID=N1Q6G6_PSEFD)

HSP 1 Score: 196 bits (499), Expect = 7.200e-58
Identity = 102/276 (36.96%), Postives = 143/276 (51.81%), Query Frame = 1
Query:   10 DLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRP--PELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHAT----------APWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPN 801
            DL+ +GY VV  V+S   C+  V+  WEWL S  +G +R + STW ++  P      L   YS+ H  F W +R +  +L VF  +WGT+DLI SF+G+ V  P  PE  +     +  K W H DQ   ++  +      +  QG  NL  +G  DG   VLSGSH LH               +G  ++ Y   VED AWY+ QGC +  +    G L+LWDSR IH N  P     R+ T+VC  PR  +T  + +R+R+ FE  + T+HWPN
Sbjct:    9 DLERDGYAVVPEVVSRESCNAFVESAWEWLESFPNGFKRSDRSTWTAEHLPYGHDRGLYNRYSVNHEAFVWKIRTDPGILSVFQKVWGTDDLIASFDGINVSLPVNPETGRTDIETT--KPWPHIDQDPRSISNL------ELYQGIANLAPNGPDDGGLVVLSGSHRLHEKHFESIGGFNPEKDLGVGENGYNFDVEDAAWYREQGCKEVKICANAGDLILWDSRTIHWNCSPTGDQTRFITYVCYCPRDRMTEEQLQRKREVFEARKGTTHWPN 276          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: F9X3N3_ZYMTI (Uncharacterized protein n=4 Tax=Zymoseptoria tritici TaxID=1047171 RepID=F9X3N3_ZYMTI)

HSP 1 Score: 191 bits (485), Expect = 1.150e-55
Identity = 102/278 (36.69%), Postives = 144/278 (51.80%), Query Frame = 1
Query:    4 IQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRP--PELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLH-----ATAPW-----VGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPN 801
            +QDL+ +G+ VV  VL    CD  V+  WEWL S   G  R + STW ++  P      L   Y + H  F W +R +  +LKVF  +WGT+DLI SF+G+ +  P  PE+ +     +  K W H DQ+  T+DK+      +  QG  N+  +G  DG   VLSGSH LH     +T  +      G +++ Y    EDVAWY  QGC    +    G L+LWDSR IH N  P     R+  +VC  PRS ++    K + + F+  + T+HWPN
Sbjct:   16 LQDLEQDGFVVVPNVLPKPSCDEFVEQAWEWLESASHGFRRDDRSTWTAEHLPYGHDRGLYNRYCVNHEAFVWRIRSHPGILKVFSQVWGTDDLIASFDGINISLPVNPEVGRTDI--AATKPWPHIDQNPRTIDKL------ELYQGIANIAPNGPLDGGLVVLSGSHKLHTEHFDSTGGFRAHQDSGLAENGYNFLPEDVAWYHRQGCKQVKICANAGDLILWDSRTIHWNCTPTQSQTRFAAYVCYCPRSRMSDEDLKTKSEIFDLRKGTTHWPN 285          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: UPI001D528D7E (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D528D7E)

HSP 1 Score: 182 bits (463), Expect = 1.750e-52
Identity = 89/276 (32.25%), Postives = 140/276 (50.72%), Query Frame = 1
Query:    1 IIQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHA----------TAPWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWP 798
            ++ DL+ +GY V+  ++  + C++ V+  W+WL S   G +R + STW ++  P      L   Y + H  F W +R   N++KVF  +WGT+DLI SF+G+ V  P           + ++W H DQ   T++ +      +  QG  N+  +G  DG   VL GSH LH           +   +G  K+ Y    +D  WY+ +GC +  +    G L+LWDSR IH N  P     R+ ++VC  PR+ ++     R+RD FE  + T+HWP
Sbjct:    6 LLADLERDGYVVIPNIIPQSSCENFVEQAWQWLESFPHGFKRDDRSTWTAEHLPSGHRKGLYNRYCVNHEDFVWKIRAEPNIVKVFEQVWGTDDLIASFDGMNVSLPVNDKTGRTDVEITEAWPHIDQDPRTIEDL------ELYQGIANMAPNGPEDGGLVVLEGSHKLHQQHFDEVGGFRSEEDIGVGKNGYNFISKDADWYRAKGCKEVKICANAGDLILWDSRTIHWNCSPTGSQTRFISYVCYCPRNKMSQELLARKRDIFEARKGTTHWP 275          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: A0A2D3ULN1_9PEZI (Uncharacterized protein n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3ULN1_9PEZI)

HSP 1 Score: 182 bits (461), Expect = 3.580e-52
Identity = 92/274 (33.58%), Postives = 133/274 (48.54%), Query Frame = 1
Query:   10 DLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHAT----------APWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPN 801
            DL+ +GY VV  V+ P  CD  +   W WL S   G +R + STW +D  P      L   YS+ H  F W +R    +L  F ++WGTEDLI SF+G+ V  P               W H DQ+  T++++      +  QG  NL  +G  DG   VL GSH+LH                G  ++ Y     D  WY+ +GC +  V    G L+LWDSR IH N  P     R+ T+VC  P+S ++    +++++ F+  + T+HWPN
Sbjct:   10 DLERDGYVVVPKVIPPKSCDDFIASAWSWLESFPHGFKRNDISTWTADHLPYGQDRGLYNRYSVNHEDFVWKIRTEPGILATFAAVWGTEDLIASFDGMNVSLPVNPKSGRTDVEATSPWPHIDQNPRTIERL------ELYQGIANLAKNGPDDGGLVVLKGSHLLHKQHFEEIGGFREGADAGIGENGYNFEKGDDKWYRDRGCEEVKVCAEAGDLILWDSRTIHWNAAPTGEHTRFATYVCYCPKSWMSEPELEKKKEIFKARKGTTHWPN 277          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: A0A2E0ELQ7_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E0ELQ7_9RICK)

HSP 1 Score: 179 bits (453), Expect = 3.860e-51
Identity = 103/284 (36.27%), Postives = 150/284 (52.82%), Query Frame = 1
Query:    1 IIQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSG----IERLNPSTWGSDRWPMSSGHS-LIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTE--DLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLH---ATAPWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKP---GNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPNRMRL 813
            +++ LQ +G  ++ G L     D    G+W++L  + +     I+R N  TW ++ + +   H  L+Q +  GHA   WD+R N  VL VF ++W  E  DL+ SF+G+ +  PPE TK  F     K WLHCDQS    +       ++C+Q  VN   + + D     L GSH+LH   A      T+ DWYK +  ++  YK   C    V CPKG LVLWDSR +H   +P     P  R   ++C  PRSH T +  +++  AFE+ RTTSHWPN+ +L
Sbjct:    8 LVETLQRDGAAILPGYLEEI-ADEIEPGIWDFLEGITANWETPIDRNNEKTW-NEFYNLYPKHGMLLQQWQAGHANICWDIRQNMKVLNVFSTIWNCEIEDLLVSFDGLSMHLPPEKTKRRFN---QKEWLHCDQSFRDSN-------FKCVQSWVNGSETNENDATLMFLKGSHLLHSEFAKKLDKPTAADWYKFTDSELELYKE--CEKVRVACPKGSLVLWDSRTVHCGAEPLRRTEPRIRSVIYLCYLPRSHATEANLRKKIKAFEDQRTTSHWPNKPKL 277          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: N1QGT2_SPHMS (Uncharacterized protein n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=N1QGT2_SPHMS)

HSP 1 Score: 177 bits (450), Expect = 1.940e-50
Identity = 99/280 (35.36%), Postives = 139/280 (49.64%), Query Frame = 1
Query:   10 DLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSG-IERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRP--PELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHAT----------APW--VGTSKDWYKLSVEDVAWYKG-QGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPN 801
            DL  +GY VV  V+ P+ C   V+  W WL S  +    R + STW +   P      L   YS+ H  F W++R    +L+ F  +WGT+DLI SF+G+ +  P  PE  +     +  K W H DQ   T+ +       +  QG  NL  +G  DG   VL+GSH LH             P   +G  ++ Y  + ED AWY+   GC +  V    G L+LWDSR IH NT P     R+ T+VC  PRS +T    +++R+ FE  + T+HWPN
Sbjct:   14 DLDRDGYVVVPSVVPPSVCASFVESAWSWLESFPTNNFSRTDRSTWKASHLPSDHSKGLYNRYSVNHEAFVWNIRTQPGILETFSQIWGTDDLIASFDGLNISLPVHPEHGRTDVEET--KPWEHIDQDPRTISEC------KLYQGIANLADNGPSDGGLVVLAGSHKLHQRHFDAVNGGKFRPECDLGEGENGYNFNPEDAAWYREVAGCPEVKVCAKAGDLILWDSRTIHWNTNPKGERTRFATYVCYCPRSFMTEEELEKKREIFEQRKGTTHWPN 285          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: A0A5M6BT47_9TREE (Uncharacterized protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BT47_9TREE)

HSP 1 Score: 173 bits (439), Expect = 6.690e-49
Identity = 92/280 (32.86%), Postives = 140/280 (50.00%), Query Frame = 1
Query:   10 DLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRP--PELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHA----------TAPWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWPNRMRL 813
            DL+ +GY V+  ++    CD  V   WEWL S   G +R + STW ++  P S+   L   YS+ H  F W +R    ++KVF  +WGT+DLI SF+G+    P   E  +   +P+   +W H DQ+  T+ +      ++  QG  NL  +G  DG   VL GSH LH                G +++ Y     +  W+K +GC +  +   KG L+LWDSR IH N  P     R+ T+VC  PR  +T     ++   F++ + T+H+PN  R+
Sbjct:    9 DLERDGYVVLPNIIPAEVCDEFVSEAWEWLESFPYGFKRDDRSTWDAEHLPYSTTGGLYNRYSVNHEAFVWKIRTQPAIIKVFEQIWGTDDLIASFDGMNASLPINAETGRKDIKPT--PAWPHIDQNPRTISR------FELYQGIANLSPNGPQDGGLCVLKGSHKLHQEYFESIGGFKADQDAGVNENGYTYKKGEDEWFKSKGCEEVKICAGKGDLILWDSRTIHWNASPVGTQTRFVTYVCYCPRDQMTPEEQTKKVQVFKDRKGTTHFPNMNRI 280          
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Match: A0A1B9IZW4_9TREE (Uncharacterized protein n=1 Tax=Kwoniella mangroviensis CBS 10435 TaxID=1331196 RepID=A0A1B9IZW4_9TREE)

HSP 1 Score: 172 bits (437), Expect = 1.330e-48
Identity = 91/273 (33.33%), Postives = 136/273 (49.82%), Query Frame = 1
Query:   10 DLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGSDRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFNGVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVNLEASGQGDGCFRVLSGSHMLHATA----------PWVGTSKDWYKLSVEDVAWYKGQGCVDTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAKRRRDAFENDRTTSHWP 798
            DL+ +GY VV  V+S  +C       WEWL S   G +R + STW ++  P S+   L   YS+ H  F W +R    ++K+F  +WGTEDLI SF+G+    P          S  K+W H DQ+  TV        ++  QG  NL  +G  DG   VL GSH LH                G  ++ Y   ++++ W++G GC +  V   +G L+LWDSR IH N  P     R+ T+VC  P++ ++S     +   F++ + T+H+P
Sbjct:    9 DLERDGYVVVPNVISKEQCKEFQQKAWEWLESFPYGFKRDDKSTWTNEHLPYSTTGGLYNRYSVNHEDFVWKIRTEPAIIKIFEQIWGTEDLIASFDGMNASLPINPKTGRKDISTTKAWPHIDQNPRTVQN------FELYQGIANLSPNGPEDGGLCVLKGSHKLHQEYFDHIGGFKLDQDAGVKENGYNYKIDEMDWFEGIGCEEVKVCAGEGDLILWDSRTIHWNASPTGEQTRFVTYVCYCPKTLMSSEELAVKAQIFKDRKGTTHFP 275          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig667.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106C72A91.690e-6640.86putative phytanoyl-CoA dioxygenase n=2 Tax=Dendron... [more]
A0A6S7K192_PARCT2.460e-6540.50Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
N1Q6G6_PSEFD7.200e-5836.96Uncharacterized protein n=3 Tax=Pseudocercospora T... [more]
F9X3N3_ZYMTI1.150e-5536.69Uncharacterized protein n=4 Tax=Zymoseptoria triti... [more]
UPI001D528D7E1.750e-5232.25uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
A0A2D3ULN1_9PEZI3.580e-5233.58Uncharacterized protein n=1 Tax=Ramularia collo-cy... [more]
A0A2E0ELQ7_9RICK3.860e-5136.27Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
N1QGT2_SPHMS1.940e-5035.36Uncharacterized protein n=1 Tax=Sphaerulina musiva... [more]
A0A5M6BT47_9TREE6.690e-4932.86Uncharacterized protein n=1 Tax=Kwoniella shandong... [more]
A0A1B9IZW4_9TREE1.330e-4833.33Uncharacterized protein n=1 Tax=Kwoniella mangrovi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig667contigP-littoralis_Contig667:125250..126073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog83344.XP_007919884.1
PFAMsPhyH
Model size813
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.18e-58
EggNOG OGs2E1NR@1|root,2S8YZ@2759|Eukaryota,39QBP@33154|Opisthokonta,3Q6GV@4751|Fungi,3RPEF@4890|Ascomycota,205ID@147541|Dothideomycetes,3MPEG@451867|Dothideomycetidae
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size813
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791388.0471592-CDS-P-littoralis_Contig667:125249..1259241680791388.0471592-CDS-P-littoralis_Contig667:125249..125924Pylaiella littoralis U1_48CDSP-littoralis_Contig667 125250..125924 +
1680791388.0598555-CDS-P-littoralis_Contig667:125935..1260731680791388.0598555-CDS-P-littoralis_Contig667:125935..126073Pylaiella littoralis U1_48CDSP-littoralis_Contig667 125936..126073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig667.19.1prot_P-littoralis_Contig667.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig667 125250..126073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig667.19.1

>prot_P-littoralis_Contig667.19.1 ID=prot_P-littoralis_Contig667.19.1|Name=mRNA_P-littoralis_Contig667.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=271bp
IIQDLQTNGYCVVGGVLSPTECDHAVDGLWEWLGSLGSGIERLNPSTWGS
DRWPMSSGHSLIQHYSIGHAPFAWDVRMNKNVLKVFGSLWGTEDLITSFN
GVCVMRPPELTKCIFRPSVDKSWLHCDQSKMTVDKVPTVHGWQCIQGGVN
LEASGQGDGCFRVLSGSHMLHATAPWVGTSKDWYKLSVEDVAWYKGQGCV
DTLVTCPKGGLVLWDSRAIHANTKPGNPGFRYTTFVCMTPRSHLTSSRAK
RRRDAFENDRTTSHWPNRMRL
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mRNA from alignment at P-littoralis_Contig667:125250..126073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig667.19.1 ID=mRNA_P-littoralis_Contig667.19.1|Name=mRNA_P-littoralis_Contig667.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=824bp|location=Sequence derived from alignment at P-littoralis_Contig667:125250..126073+ (Pylaiella littoralis U1_48)
ATCATCCAGGATCTGCAGACGAACGGATATTGCGTGGTGGGTGGCGTTCT CTCGCCGACGGAGTGCGACCATGCAGTAGACGGTTTGTGGGAGTGGCTCG GGTCTCTTGGCAGCGGGATAGAGAGGTTGAATCCCAGTACGTGGGGATCC GACAGGTGGCCGATGAGTTCAGGGCATTCTCTGATCCAGCATTACTCGAT AGGCCACGCCCCTTTTGCTTGGGACGTGCGTATGAACAAGAACGTGCTCA AAGTGTTCGGGAGTTTGTGGGGCACGGAGGACTTGATTACCTCGTTCAAT GGAGTGTGTGTTATGCGCCCACCTGAGCTCACCAAGTGCATCTTTCGTCC CAGCGTTGACAAGTCTTGGCTACACTGCGATCAAAGCAAAATGACGGTTG ACAAGGTCCCAACAGTGCACGGGTGGCAGTGTATTCAGGGCGGTGTAAAC CTAGAGGCTTCCGGTCAAGGGGACGGGTGTTTCAGAGTTTTGTCTGGTTC GCATATGTTGCACGCTACGGCCCCGTGGGTTGGGACGTCCAAAGATTGGT ACAAGCTTTCGGTGGAGGACGTTGCGTGGTACAAGGGTCAGGGATGTGTC GACACGCTGGTTACGTGCCCCAAGGGTGGTTTAGTGCTTTGGGACAGTCG GGCTATTCACGCCAACACGAAACCCGTGCGTGGTAGGGGAACCCTGGGTT CAGGTACACGACGTTTGTCTGCATGACGCCGCGTAGCCACTTGACTAGTA GTCGCGCCAAGCGGCGCCGGGATGCATTCGAGAATGATCGTACTACCAGC CACTGGCCGAATCGCATGAGACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig667:125250..126073+

>mRNA_P-littoralis_Contig667.19.1 ID=mRNA_P-littoralis_Contig667.19.1|Name=mRNA_P-littoralis_Contig667.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=813bp|location=Sequence derived from alignment at P-littoralis_Contig667:125250..126073+ (Pylaiella littoralis U1_48)
ATCATCCAGGATCTGCAGACGAACGGATATTGCGTGGTGGGTGGCGTTCT
CTCGCCGACGGAGTGCGACCATGCAGTAGACGGTTTGTGGGAGTGGCTCG
GGTCTCTTGGCAGCGGGATAGAGAGGTTGAATCCCAGTACGTGGGGATCC
GACAGGTGGCCGATGAGTTCAGGGCATTCTCTGATCCAGCATTACTCGAT
AGGCCACGCCCCTTTTGCTTGGGACGTGCGTATGAACAAGAACGTGCTCA
AAGTGTTCGGGAGTTTGTGGGGCACGGAGGACTTGATTACCTCGTTCAAT
GGAGTGTGTGTTATGCGCCCACCTGAGCTCACCAAGTGCATCTTTCGTCC
CAGCGTTGACAAGTCTTGGCTACACTGCGATCAAAGCAAAATGACGGTTG
ACAAGGTCCCAACAGTGCACGGGTGGCAGTGTATTCAGGGCGGTGTAAAC
CTAGAGGCTTCCGGTCAAGGGGACGGGTGTTTCAGAGTTTTGTCTGGTTC
GCATATGTTGCACGCTACGGCCCCGTGGGTTGGGACGTCCAAAGATTGGT
ACAAGCTTTCGGTGGAGGACGTTGCGTGGTACAAGGGTCAGGGATGTGTC
GACACGCTGGTTACGTGCCCCAAGGGTGGTTTAGTGCTTTGGGACAGTCG
GGCTATTCACGCCAACACGAAACCCGGGAACCCTGGGTTCAGGTACACGA
CGTTTGTCTGCATGACGCCGCGTAGCCACTTGACTAGTAGTCGCGCCAAG
CGGCGCCGGGATGCATTCGAGAATGATCGTACTACCAGCCACTGGCCGAA
TCGCATGAGACTC
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