mRNA_P-littoralis_Contig666.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.35.1
Unique NamemRNA_P-littoralis_Contig666.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: D8LBS0_ECTSI (eIF-5a domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS0_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 7.760e-111
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 2 
Query:    2 KSTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEESG 496
            KSTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFGNEIKAKFD+G TLCVTVMAAMGHEQIVTYKEESG
Sbjct:   36 KSTMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEESG 200
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A6H5KDL5_9PHAE (eIF-5a domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL5_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.060e-109
Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 2 
Query:    5 STMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEESG 496
            STMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYP+GFGNEIKAKF++GLTLCVTVMAAMGHEQIVTYKEESG
Sbjct:   91 STMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFEEGLTLCVTVMAAMGHEQIVTYKEESG 254
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A835Z7R2_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R2_9STRA)

HSP 1 Score: 248 bits (632), Expect = 7.060e-79
Identity = 116/162 (71.60%), Postives = 141/162 (87.04%), Query Frame = 2 
Query:    8 TMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            T AT++ LN+YDFT +DAGASHT P +AGQIRKGGYIVIKG PCKV NVSTSKTGKHGHAKANFTA DIFTGKKLED++P++H TSVP V+R +YQLLDISDDGF SLLTE GDTKDDL+LP +P+GF  +++ +FD G TL VTV++AMGH+Q++ YKE++
Sbjct:    4 TSATDEALNNYDFTSSDAGASHTFPMDAGQIRKGGYIVIKGRPCKVANVSTSKTGKHGHAKANFTAIDIFTGKKLEDIVPTSHATSVPNVARVDYQLLDISDDGFLSLLTESGDTKDDLKLPGFPEGFDEQLRTEFDAGKTLIVTVVSAMGHDQVMAYKEDT 165
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A7S2UU65_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU65_9STRA)

HSP 1 Score: 229 bits (585), Expect = 7.550e-72
Identity = 110/156 (70.51%), Postives = 136/156 (87.18%), Query Frame = 2 
Query:   26 KLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            KL+D+ F   ++GAS TIP EAGQIRKGG+IVIKG PCKVVNVSTSKTGKHGHAKANFTA DIFTGKK ED++P+THTTSVP VSR EYQL+DISDDG+ SLLT+ GDTKDDL LPT+P+GF +EI+A FD+G ++ +TV++AMG +Q+V+ KE++
Sbjct:    7 KLDDFHFDTGESGASLTIPMEAGQIRKGGHIVIKGKPCKVVNVSTSKTGKHGHAKANFTAIDIFTGKKYEDIVPTTHTTSVPNVSRAEYQLIDISDDGYLSLLTDSGDTKDDLVLPTHPEGFADEIRAAFDEGKSMVLTVLSAMGTDQVVSMKEDT 162
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A8K1CGM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM3_PYTOL)

HSP 1 Score: 225 bits (573), Expect = 4.280e-70
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 2 
Query:   32 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            +DY F  TDAGAS T P EAGQI+K G+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP VSR EY LLDIS+D F SL+ E GDT++D++LP+YPDGF NEI++ F+DG  L VTV+ A G EQI++ KE++
Sbjct:    3 DDYTFESTDAGASETYPMEAGQIKKNGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRKEYTLLDISEDDFVSLMDESGDTREDVKLPSYPDGFANEIRSDFEDGKQLVVTVLKACGTEQIISKKEDT 156
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A6A3TKK1_9STRA (Eukaryotic translation initiation factor 5A n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TKK1_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.330e-69
Identity = 109/164 (66.46%), Postives = 134/164 (81.71%), Query Frame = 2 
Query:    5 STMATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEESG 496
            STMA E + +D++F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVNVSTSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP VSR EY LLDI+DD F SL+ + G+T++D++LPT+P+ F +EI+A FDDG  L +TV+ A G EQ++  KE+ G
Sbjct:   16 STMA-EHEEHDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFVSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQVIAKKEDLG 178
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: M4B4L4_HYAAE (Eukaryotic translation initiation factor 5A n=18 Tax=Peronosporaceae TaxID=4777 RepID=M4B4L4_HYAAE)

HSP 1 Score: 223 bits (567), Expect = 3.560e-69
Identity = 108/160 (67.50%), Postives = 131/160 (81.88%), Query Frame = 2 
Query:   11 MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEE 490
            MA E++  D+ F  TDAGAS T PSEAGQIRKGG+I+IKGHPCKVVN+STSKTGKHGHAK NFTA DIFT KK ED++PSTHTTSVP VSR EY LLDI+DD FCSL+ + GDT++D++LPT+P+ FG EI+A F+DG  L +TV+ A G EQI+  KE+
Sbjct:    1 MAEEEQ--DFTFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNMSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGDTREDIKLPTFPETFGEEIRADFNDGKQLVLTVLKACGTEQIIAKKED 158
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: A0A5D6XTX1_9STRA (Eukaryotic translation initiation factor 5A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTX1_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.920e-68
Identity = 106/153 (69.28%), Postives = 126/153 (82.35%), Query Frame = 2 
Query:   35 DYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP V+R EY LLDISDD F +L+ + GDT+DD++LPT+PD F +EI+A FD G  L VTV+ A G EQI++ KE++
Sbjct:    5 DYTFESTDAGASDTYPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVARAEYTLLDISDDDFVTLMDDGGDTRDDIKLPTFPDNFADEIRADFDSGKQLVVTVLKACGIEQIISKKEDT 157
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: W7U6Y6_9STRA (Eukaryotic translation initiation factor 5A n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Y6_9STRA)

HSP 1 Score: 219 bits (559), Expect = 6.130e-68
Identity = 107/155 (69.03%), Postives = 129/155 (83.23%), Query Frame = 2 
Query:   29 LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            + DYDF+GT AGAS   PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V+R+EYQLLDI +DGF SLL E+G T+DDL+LP YP+GF  EI   + DG +L V+V++A G +QI+ YKEE+
Sbjct:    9 IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
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BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Match: K3WUI8_GLOUD (Eukaryotic translation initiation factor 5A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUI8_GLOUD)

HSP 1 Score: 218 bits (556), Expect = 1.570e-67
Identity = 103/154 (66.88%), Postives = 127/154 (82.47%), Query Frame = 2 
Query:   32 NDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMGHEQIVTYKEES 493
            +DY F  TDAGAS T P EAGQIRKGG+I+IKGHPCKVV+VSTSKTGKHGHAK NFTA DIFT KKLED++PSTHTTSVP VSR+EY LLDI+DD F SL+ + G+T++D++LPT+PD F  EI+A FD G  L +TV+ A G EQ+++ KE++
Sbjct:    3 DDYTFESTDAGASDTFPCEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKLEDIVPSTHTTSVPFVSRSEYTLLDITDDDFLSLMDDSGETREDIKLPTFPDNFAEEIRADFDAGKQLVLTVLKACGTEQVISKKEDT 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBS0_ECTSI7.760e-11198.18eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KDL5_9PHAE2.060e-10998.17eIF-5a domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7R2_9STRA7.060e-7971.60Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A0A7S2UU65_9STRA7.550e-7270.51Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A8K1CGM3_PYTOL4.280e-7069.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3TKK1_9STRA3.330e-6966.46Eukaryotic translation initiation factor 5A n=3 Ta... [more]
M4B4L4_HYAAE3.560e-6967.50Eukaryotic translation initiation factor 5A n=18 T... [more]
A0A5D6XTX1_9STRA3.920e-6869.28Eukaryotic translation initiation factor 5A n=1 Ta... [more]
W7U6Y6_9STRA6.130e-6869.03Eukaryotic translation initiation factor 5A n=2 Ta... [more]
K3WUI8_GLOUD1.570e-6766.88Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:101974..104710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBS0
Preferred nameEIF5A2
PFAMsEFP_N,eIF-5a
Model size1060
Max annot lvl2759|Eukaryota
KEGG koko:K03263,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0002181,GO:0002182,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003746,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005739,GO:0005777,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006413,GO:0006414,GO:0006415,GO:0006417,GO:0006446,GO:0006448,GO:0006449,GO:0006452,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006886,GO:0006913,GO:0006915,GO:0007204,GO:0007275,GO:0007276,GO:0007283,GO:0007548,GO:0007568,GO:0008079,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008360,GO:0008406,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010509,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010608,GO:0010628,GO:0010660,GO:0010661,GO:0010662,GO:0010663,GO:0010665,GO:0010666,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0017069,GO:0017070,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022411,GO:0022414,GO:0022603,GO:0022604,GO:0022626,GO:0030003,GO:0030425,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031503,GO:0031967,GO:0031975,GO:0031984,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032984,GO:0032991,GO:0033036,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035262,GO:0036477,GO:0042127,GO:0042175,GO:0042221,GO:0042579,GO:0042592,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045138,GO:0045184,GO:0045595,GO:0045597,GO:0045727,GO:0045787,GO:0045901,GO:0045905,GO:0045948,GO:0046661,GO:0046907,GO:0047485,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051028,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051302,GO:0051480,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060491,GO:0060548,GO:0061458,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072503,GO:0072507,GO:0080090,GO:0090068,GO:0090342,GO:0090343,GO:0090598,GO:0097066,GO:0097067,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098771,GO:0098805,GO:0098827,GO:0120025,GO:0120038,GO:1900247,GO:1900249,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903270,GO:1903272,GO:1990904,GO:2000112,GO:2000377,GO:2000379,GO:2000765,GO:2000767
Exons5
Evalue5.84e-113
EggNOG OGsCOG0231@1|root,KOG3271@2759|Eukaryota
Ec32 ortholog descriptionTranslation protein SH3-like domain
Ec32 orthologEc-27_002930.1
Descriptioneukaryotic translation initiation factor
Cds size489
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.35.1prot_P-littoralis_Contig666.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 101984..103819 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.244131-UTR-P-littoralis_Contig666:101973..1019831680791386.244131-UTR-P-littoralis_Contig666:101973..101983Pylaiella littoralis U1_48UTRP-littoralis_Contig666 101974..101983 +
1680791386.3069825-UTR-P-littoralis_Contig666:103819..1042941680791386.3069825-UTR-P-littoralis_Contig666:103819..104294Pylaiella littoralis U1_48UTRP-littoralis_Contig666 103820..104294 +
1680791386.31861-UTR-P-littoralis_Contig666:104624..1047101680791386.31861-UTR-P-littoralis_Contig666:104624..104710Pylaiella littoralis U1_48UTRP-littoralis_Contig666 104625..104710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791386.2607775-CDS-P-littoralis_Contig666:101983..1021151680791386.2607775-CDS-P-littoralis_Contig666:101983..102115Pylaiella littoralis U1_48CDSP-littoralis_Contig666 101984..102115 +
1680791386.2719488-CDS-P-littoralis_Contig666:102678..1028741680791386.2719488-CDS-P-littoralis_Contig666:102678..102874Pylaiella littoralis U1_48CDSP-littoralis_Contig666 102679..102874 +
1680791386.2837539-CDS-P-littoralis_Contig666:103086..1031811680791386.2837539-CDS-P-littoralis_Contig666:103086..103181Pylaiella littoralis U1_48CDSP-littoralis_Contig666 103087..103181 +
1680791386.2975764-CDS-P-littoralis_Contig666:103753..1038191680791386.2975764-CDS-P-littoralis_Contig666:103753..103819Pylaiella littoralis U1_48CDSP-littoralis_Contig666 103754..103819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.35.1

>prot_P-littoralis_Contig666.35.1 ID=prot_P-littoralis_Contig666.35.1|Name=mRNA_P-littoralis_Contig666.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MATEDKLNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVST
SKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDIS
DDGFCSLLTEEGDTKDDLQLPTYPDGFGNEIKAKFDDGLTLCVTVMAAMG
HEQIVTYKEESG*
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mRNA from alignment at P-littoralis_Contig666:101974..104710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.35.1 ID=mRNA_P-littoralis_Contig666.35.1|Name=mRNA_P-littoralis_Contig666.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2737bp|location=Sequence derived from alignment at P-littoralis_Contig666:101974..104710+ (Pylaiella littoralis U1_48)
AAAGTCAACCATGGCCACCGAGGACAAGCTGAACGACTACGACTTCACCG
GCACCGACGCCGGTGCGTCGCACACCATCCCGTCGGAAGCCGGCCAGATC
CGTAAGGGCGGCTACATCGTTATCAAGGGCCACCCCTGCAAGGTGAGAGG
ACAGTCGAAAGCGAAGCAGATGAAGGTCTCTAGACCCGAGCGTCCTGGAG
ATGGTCATTTCGGCGTGGTTTTCCGTGATCGTGTGATATTGGCGATACGT
ATCATACAAGGTTTTATCTACGTGTTTTGCTGCACGAATGGTACAGCGGG
CTCCGAGAATGATGAAACATTCTTTTCTATCGTGCTGTAACACCCAGTTA
AGTACGCGGGTCTCTCGCATGGTTAGGGCAACAGGGTCGGAGTGAGTACG
CAATTCTTTGCCCCCCCACTCCACTCTCTCGTTTCCAGCGGCTCCTGAGT
TGGTGTGTTTCTGACAGGAGGCGAAAATTCTAGTGTAACAGATCACATGA
TGGGCCATCACACTATCACACACTCTTAAAGCAAATAAGTGTTGGCCCTG
CTGTCCTAGACAAGGCGCCACACCCACAGGATAGGAGGCGGCACTATTCC
GTTCACAACGCCCTGCCGATATCCTTTGTTTTTTTTCTTTAATCTTTTTC
TAGATTTAACGCTTTCTTTTTTTTCCTGCCCTTTGTTTTTTATCTTCTGC
AAAAGGTGGTGAATGTGTCCACATCCAAGACGGGCAAGCACGGCCACGCC
AAGGCTAACTTCACGGCGACCGACATCTTCACCGGAAAGAAGCTTGAGGA
CGTCATCCCGTCCACGCACACCACCTCTGTGCCGGTTGTGAGCCGCAACG
AGTACCAGCTGCTCGACATCTCCGATGACGGCTTCTGCTCGCTCCTAACC
GGTAAACCCCGCGCTAAGTCTCAACTCCTCTGTCTTACTAGAATGTTTTC
GGCGTGGTTGCTAGGGAAGGTTCGAACGTGGTCGAATAAAGCCAAATCAA
TACGTAGTAGTCTTGCACGAAAGGTTGTCGCGCCCCTTTCCCTGTCTTGC
CTCTGAATACTCCCACTCTCTTGTGTATTTCTTTTGTTTTTACTTCTCTT
GGGCGTGTTGCAGAGGAAGGCGACACCAAGGATGACCTCCAGCTGCCCAC
CTACCCCGACGGTTTCGGAAACGAGATCAAGGCGAAGTTTGACGATGGAT
TGACCCTGGTGAGACTGATGGACGCAAGTGCTGCTGTGTGTGGTTGCTGT
ATGCTGCTTAGTTCTGCTGTGAACGTTCCTGTGAGGTGGCACAAGAAGTT
TCCACCGGGGTGGTTTGTACATGTCTCGTTTTCTGGGGCGGAACTGGGAA
ATTTATCTTGAACTTCGAATTATTCCCCGAAGTCGCGTCAGTAGTGAGTG
GCCCAGTCCTTCGTGATCGGTTTTCAAGCTGACAGCTGCCATGTAGGCAC
AGTTTATGACTTGAAAGTTATCCAGACTGACGTGTACCTGTCTGTAAATA
TAACCTAATATGGCACAAGGTCCAACCCACCTTTCATGTACCTCACACCA
CACCCACCTCGGCGATGTGGCTGTCTCTGCATTGTCGGTGTGGCATCCGT
ACGACTCCTACAACGAAAACTTGTTGTTCGTACAGTACATCAAAGCTAAA
CGATGGACAAAATATTGCATCAACGTGTGTAACCTGCTCAACCCTTCCCA
TTTTTCTGTCGGTCGTGTGTCGTGCTGTGTTGTGGTGCTGCTGCGGCTGT
GGCTGTGGCTGTGGCGCTTTGTGCATGCAGTGCGTGACGGTGATGGCTGC
CATGGGCCACGAGCAGATCGTCACGTACAAGGAGGAGTCCGGCTAAAGAA
AAACTTGACTCGTCAAAAGGGAGGGCAAGCGTTTTATCTCGTCTTCCTGC
GTACCTCTCTTGTCTTGCGCTTTTCCTCGCGGTGAATCACGGTGGAGACT
TAAGGGGAGGAGGGAGGTGGGGGGAGAGAGCAGAGGTATTGTCGTCGGCG
CGGTGGGTGGCATGCGAGACGAAACTTTTTTGTCCAAACACGTTTCAGCG
CTTCCGCCTCCTGAACGGGCTGGGCCGTCGGCGGAATCTGGTCTCGCAAT
GCCGTCATTTTGCTATTGCTTTTTGGTGCTATGTGAATTATGTTACGGTG
GCGTGAGGCGTGCGTGCGTGCGCGGCTTTGTCGGTGCGGGGAGCGGCGAA
ATAAACGAGGCTTCGAGGGGTCGCGCTTTAAAAAAGATCCGTTTTTTGTT
GCTGGTCTCGGTGGGAGTTGGACTACTCGACTAAGACCGGATCCCCTCTA
GCGGATTGGTGGTGGTTTGAAGTTGGGGAAGACTTGTTTGAACATCACGC
TGGTCTTGATAGTGAGGAGGAAGAGGGGGAACAGGTGGGGGGGGCGTCGG
TCGGCCGCGCGCCCCACGCTCGGAAGGGCGGGCTCAGACGGAAGATCGCC
GAAGGTGGCAAAGGGGGGCATTGCGGTAGATAGCCGCGGCGGAAAATAAA
ATGAAAAAATAAAAATACAGTAACGGTCACGGTAGTCTGCTCGGAGGGAG
TTTCGATAGAACCTAGACGGACCAGAGGGCATGCGTGTGTGAAACTTGGA
AGTTCAAAGGAAAACAACTGAAGACCAAATTGGCCAAGGCGAGCTTTTGA
GGCGGGGAAAGAATAGTTCAAGAGCGGAATCGCAGCAGTAGTGGAAGGGG
GACGTACGCGCGGACGTTCACAAAGGCGCATGATGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:101974..104710+

>mRNA_P-littoralis_Contig666.35.1 ID=mRNA_P-littoralis_Contig666.35.1|Name=mRNA_P-littoralis_Contig666.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig666:101974..104710+ (Pylaiella littoralis U1_48)
ATGGCCACCGAGGACAAGCTGAACGACTACGACTTCACCGGCACCGACGC
CGGTGCGTCGCACACCATCCCGTCGGAAGCCGGCCAGATCCGTAAGGGCG
GCTACATCGTTATCAAGGGCCACCCCTGCAAGGTGGTGAATGTGTCCACA
TCCAAGACGGGCAAGCACGGCCACGCCAAGGCTAACTTCACGGCGACCGA
CATCTTCACCGGAAAGAAGCTTGAGGACGTCATCCCGTCCACGCACACCA
CCTCTGTGCCGGTTGTGAGCCGCAACGAGTACCAGCTGCTCGACATCTCC
GATGACGGCTTCTGCTCGCTCCTAACCGAGGAAGGCGACACCAAGGATGA
CCTCCAGCTGCCCACCTACCCCGACGGTTTCGGAAACGAGATCAAGGCGA
AGTTTGACGATGGATTGACCCTGTGCGTGACGGTGATGGCTGCCATGGGC
CACGAGCAGATCGTCACGTACAAGGAGGAGTCCGGCTAA
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