mRNA_P-littoralis_Contig117.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.25.1
Unique NamemRNA_P-littoralis_Contig117.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.25.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 3.450e-112
Identity = 177/254 (69.69%), Postives = 199/254 (78.35%), Query Frame = 3 
Query:  171 MKFSMAPNAAIALGFFCGVESFVVAPLPAGQEHHHIASCTSPFSSRMIRGSMGSTPTARTSSLIMMMGGFGGPAKKKKPVGVGRGQEAYQRQIKSFNGLVGAGAEGVDVYVHKEGDGDDKFIFMGKAAWSSGITAEQALQFQRGLILGHVEHLEPRWRDNPGPMRIFTAPIGTEVEVARNMHDLVRVLGPGKGKDVKVDGLTPQEVGLKPELYEPGEEYFYVRRLLDGTSPAPPANAMIESMEDLVAKGVVPGK 932
            MK S  P+AAIALG  C V+SF  APL AG +    +S      S          P + TSS +MMMGGFGGP KKKK VGVGRGQ+AYQRQ+KS++GL  AGAEG DVYVH+EGD  DKFIFMGKAAWSSGIT +QALQFQRGLILGHVE LEP W+D P PMRIFTAPI +E+EVARN+HDLVRVLGPGKGKDVKVD LTPQEVGL+PELYE GE YFYVR+L DG  PAPP+  MIE+M++LVAKGVVP K
Sbjct:    1 MKISAVPSAAIALGLLCDVDSF--APLTAGWQLRQTSSAWHMIPS--------GRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREGD--DKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAK 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI3.450e-11269.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:62909..66326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr45146
Model size1611
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.09e-08
EggNOG OGs2EIZK@1|root,2SP9S@2759|Eukaryota,2XGCX@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Cds size774
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.25.1prot_P-littoralis_Contig117.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 63079..65659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.3896072-UTR-P-littoralis_Contig117:62908..630781680789487.3896072-UTR-P-littoralis_Contig117:62908..63078Pylaiella littoralis U1_48UTRP-littoralis_Contig117 62909..63078 +
1680789487.45039-UTR-P-littoralis_Contig117:65659..663261680789487.45039-UTR-P-littoralis_Contig117:65659..66326Pylaiella littoralis U1_48UTRP-littoralis_Contig117 65660..66326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.405252-CDS-P-littoralis_Contig117:63078..634201680789487.405252-CDS-P-littoralis_Contig117:63078..63420Pylaiella littoralis U1_48CDSP-littoralis_Contig117 63079..63420 +
1680789487.4181738-CDS-P-littoralis_Contig117:64382..644601680789487.4181738-CDS-P-littoralis_Contig117:64382..64460Pylaiella littoralis U1_48CDSP-littoralis_Contig117 64383..64460 +
1680789487.433043-CDS-P-littoralis_Contig117:64775..649461680789487.433043-CDS-P-littoralis_Contig117:64775..64946Pylaiella littoralis U1_48CDSP-littoralis_Contig117 64776..64946 +
1680789487.4420342-CDS-P-littoralis_Contig117:65476..656591680789487.4420342-CDS-P-littoralis_Contig117:65476..65659Pylaiella littoralis U1_48CDSP-littoralis_Contig117 65477..65659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.25.1

>prot_P-littoralis_Contig117.25.1 ID=prot_P-littoralis_Contig117.25.1|Name=mRNA_P-littoralis_Contig117.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MKFSMAPNAAIALGFFCGVESFVVAPLPAGQEHHHIASCTSPFSSRMIRG
SMGSTPTARTSSLIMMMGGFGGPAKKKKPVGVGRGQEAYQRQIKSFNGLV
GAGAEGVDVYVHKEGDGDDKFIFMGKAAWSSGITAEQALQFQRGLILGHV
EHLEPRWRDNPGPMRIFTAPIGTEVEVARNMHDLVRVLGPGKGKDVKVDG
LTPQEVGLKPELYEPGEEYFYVRRLLDGTSPAPPANAMIESMEDLVAKGV
VPGKAEE*
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mRNA from alignment at P-littoralis_Contig117:62909..66326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.25.1 ID=mRNA_P-littoralis_Contig117.25.1|Name=mRNA_P-littoralis_Contig117.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3418bp|location=Sequence derived from alignment at P-littoralis_Contig117:62909..66326+ (Pylaiella littoralis U1_48)
CAGCGATCAGCCATCAAGCGCGCTGCCTATGTTGACGTAGATGAGGAGTT
CATGAATGTAAAGAAGGCCATGGTTCAACGGAAACAATCAACGAGCGCCC
CCCTTAAGCGAACGAGAGATGCGCAGGCTGCACAGCGTGCTGCTGCTGGT
AGTGCTGCTACTGACAAGGCATGAAGTTCTCTATGGCCCCGAACGCAGCT
ATAGCACTTGGGTTCTTCTGTGGCGTGGAGAGCTTTGTCGTAGCGCCTTT
ACCAGCTGGGCAGGAGCACCATCATATAGCATCATGTACGAGCCCGTTCT
CATCCCGCATGATCAGAGGGAGTATGGGCAGCACCCCAACTGCCCGGACA
AGTAGTCTTATCATGATGATGGGGGGATTCGGCGGCCCGGCGAAGAAAAA
GAAGCCTGTGGGTGTTGGGAGGGGGCAGGAGGCGTACCAGCGGCAGATAA
AGTCTTTTAACGGGCTTGTAGGGGCTGGTGCCGAAGGTGTGGACGTGTAC
GTACATAAAGAGGTGAGTTGCCGAGTCAAGTACAGAAGACAGCAGTTTGG
TAGCCGTGTGTGTTCGTGTGTTTGTCCAGCAGCAGGTCGACCATCTTCAC
GTCTTACTGCTGTAAGTTGCCAATCTTTTACAGGCACTTGATGGATGAAA
GCTTGTTATTGCTCGTCGAAGCAGATAGCCCCATCTTGTCACCCCCGCAC
CACGGATTGACAGCTGTACTTCTGCGCCTCCGCACCTCCGCTGTACTCGA
CACGTACTCGACGCTCACGATTCGTCCCGCATCAACAGAGTTGATCGCGG
ATACCGTACAAGTAAGCACTACAGCAGTAATCAACGGTCGGTTTGACCTG
TATGATACGTCAAAGGCGACTTCGCCACCTCCCCTGGCAGTTGCCGCTGG
GGTAGGGGGGCAAGGATGCTTTGCTCAGGCATTTGGAAACGTATGGTGTT
ACACTCCTGCTATTCGGCGTTTTTATCTCACAAGAAGGCTTGTCGTTTGA
ACACAACGGACACCCCCCGATTCTAGACCTGTGCTCATGATGCCGGGGCA
TGAAACACTCAAGACAAAAACTGCTGCGGCGCTGTTCCTCGGCTCCCAAA
ACACAATTACCGAATCCGAGACTTGTAGATGCACCTAAGTCGACCCTAAT
CACACGTTTGCACGAGCATGTTACTGCTGTATTCGCAGCCAAAACACGGC
TTGAAATACTAGTGCGGTTTATATACGCATTGCAGAAGTAAATCAGTGTC
AATGCACCAATGTAGAATGTATACTTCGTATACAAGTATCGTATGTACTT
CGAGAGCTGCATGTCTGCAGGATCATGTCAAGGAATTTGTCAGCAGATAC
CGGTATGATTGATGCCGCGTTTGGCATGTAATTCACCAGGATATCCAAGT
ACGGCTGCACTGTATAACCCAAGTTTCATGACAAGGACCAACCTCCACGC
TCTTCGTTCCCCTGCTGGCCCCAGGGAGATGGAGATGACAAGTTCATTTT
CATGGGAAAGGCCGCCTGGTCTTCAGGAATCACAGCGGAGCAGGCATTAC
AGGTACACAGTTGTCCCAACTTTCAAGACGCAATACTTTCCTAAACCAGG
GGCGATTTTTCAGAGACGGCGGACTACTGCTGTGCATGGCATAACCCACA
TCCCCCCCGACAGCGGCTAGTCACATGTAGAGCAGCACCAAACAGTACAC
AAGAAGGGGCTTGCTGCTGTTCGTAAGCATCGATAGTTTTCTCCCATCCC
TGCTGTGCGCCATCTCCGCTCCATGCTCCAGTAAAAAATGCTCACTCGCG
GCTGATGATCCTCCTGCAACATCTCACCTCTCCGCAACCCCGTAAAATAA
TACCACACCATTGCCAGTTTCAGCGAGGGCTAATTCTAGGCCACGTGGAA
CATCTGGAGCCTAGGTGGAGAGATAATCCTGGGCCAATGCGCATCTTCAC
TGCGCCGATTGGCACTGAGGTCGAGGTGGCAAGAAACATGCACGACCTCG
TGAGGGTACTAGGGCCTGGCAAGGGCAAGGATGTAAAGGTGTGTGATCGG
CTTTTGGTCACACCGTAACCGCCATGGGCTGTCATGACTTACGAAGTAGT
TGTCAGCTCCACGTATGCCCGGTAACGGCTATCAAGGCGCATCGGGAATG
GAATTTGTGTTTCGTCGAATAAGTTCCGGTATATCTAGCACCGCGCTGTG
TTGGCGGGCGATGCTGTCCCCTGTTCTCTACTACGGTAGTTTCCGAGTGT
TGGTGTGTGCACTGTGTGGTTCGTACATACGTACTGGTCCGTGGAGTGAG
AAGAGAGACCGCGAGAAAATCTGTTCGTACAAATGAATGGTTCGAGCATC
TGATGTGTGCAATACATGAGTCAACCCACAGCCGCAACTAAACGCGGCAG
CAGGTCAAGGGTACAGGCACAGGCCATGATCGACTCGACCTAACGTTGCG
CTTGGCTCGTTGATGAATAACCGCGATTGACTGTGATTTGATGCGGTCTG
AATTTGCAGCCAGCTTGTCTTTCCGTCGATTTGATCCGATCTGAATTGTC
TTGTACATTAAAATGAAGGTGGACGGCTTGACCCCGCAAGAGGTGGGACT
AAAGCCCGAGCTGTACGAGCCCGGCGAGGAGTACTTCTACGTGCGAAGGC
TCCTCGACGGCACGAGCCCCGCGCCCCCCGCGAACGCGATGATCGAGAGC
ATGGAGGACCTGGTCGCCAAGGGAGTGGTGCCTGGGAAAGCTGAAGAGTA
GTGGGACAGTAGAGGGCGAGGGAGTTCGGGGTTGTGCCTTGGCTTGACCG
GTTGAGACGTGTGATGTGGTTGAGATCACGGACAGAATTGGGTGGCAGAG
AAGTGAGTGGCGCCAGTGATAAAGGAGATGGATGTGGCAGCTTCGGCCGC
AACGGCGACAGTGGTAGCCCGCACCTAAGGCATCTGGGTAGGTCTAGACG
TTTTTGTTTTCAAGGAGGCGGGGGCGTTTAAAGTTGAAGTATTTGATGCG
AGGGCCAATTAAACTTTAGATGTGCTCGAGTATTTCTGGTTTTGTGGCAA
TTCACGCTCTGTCAGTGTTTCTCACCAACTTATACACGGTCTGTATACGA
GGTTGATATATAGTCAGCTGTTCGGGTACAATGGTTCCCGCGAACTATTG
TTTGCTTATGGAGATTCTTTGTGTACCGCAACATGGCTGCCATCGTCTGG
AAGGGCGTCACTGCGTTTAGCCAAATTTTCACCCTGAAGATGGTAGCAGC
TGAAAAAAGCCATGGTGTGGATAAGCTTGACTGACTGTGTGCAGGCACGA
ATTTCGAAACGTAGACCGGAGCGTAAGCGGTCTCATTTCATAAACAAGCA
CCACGCAACAAAGTTACCTGTCAACCGTTGCTCAACTCAACTCCCGGGGC
CGTGTATCTGAATTCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:62909..66326+

>mRNA_P-littoralis_Contig117.25.1 ID=mRNA_P-littoralis_Contig117.25.1|Name=mRNA_P-littoralis_Contig117.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig117:62909..66326+ (Pylaiella littoralis U1_48)
ATGAAGTTCTCTATGGCCCCGAACGCAGCTATAGCACTTGGGTTCTTCTG
TGGCGTGGAGAGCTTTGTCGTAGCGCCTTTACCAGCTGGGCAGGAGCACC
ATCATATAGCATCATGTACGAGCCCGTTCTCATCCCGCATGATCAGAGGG
AGTATGGGCAGCACCCCAACTGCCCGGACAAGTAGTCTTATCATGATGAT
GGGGGGATTCGGCGGCCCGGCGAAGAAAAAGAAGCCTGTGGGTGTTGGGA
GGGGGCAGGAGGCGTACCAGCGGCAGATAAAGTCTTTTAACGGGCTTGTA
GGGGCTGGTGCCGAAGGTGTGGACGTGTACGTACATAAAGAGGGAGATGG
AGATGACAAGTTCATTTTCATGGGAAAGGCCGCCTGGTCTTCAGGAATCA
CAGCGGAGCAGGCATTACAGTTTCAGCGAGGGCTAATTCTAGGCCACGTG
GAACATCTGGAGCCTAGGTGGAGAGATAATCCTGGGCCAATGCGCATCTT
CACTGCGCCGATTGGCACTGAGGTCGAGGTGGCAAGAAACATGCACGACC
TCGTGAGGGTACTAGGGCCTGGCAAGGGCAAGGATGTAAAGGTGGACGGC
TTGACCCCGCAAGAGGTGGGACTAAAGCCCGAGCTGTACGAGCCCGGCGA
GGAGTACTTCTACGTGCGAAGGCTCCTCGACGGCACGAGCCCCGCGCCCC
CCGCGAACGCGATGATCGAGAGCATGGAGGACCTGGTCGCCAAGGGAGTG
GTGCCTGGGAAAGCTGAAGAGTAG
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