mRNA_P-littoralis_Contig666.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig666.19.1
Unique NamemRNA_P-littoralis_Contig666.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.360e-27
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  267 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.770e-27
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  590 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.940e-27
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct: 1038 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.400e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS+++LSL RKWAR+SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  397 RRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467
[Close]
BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.140e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATG 132
            RRVCDYS+ SLL RLP TLS++SLSL RKWAR+SWLY+ AY+ G
Sbjct:  473 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A2I1GI64_9GLOM (Uncharacterized protein n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GI64_9GLOM)

HSP 1 Score: 60.5 bits (145), Expect = 5.290e-9
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RR+C Y+   L+KR+P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  528 RRICSYNFADLMKRVPEVLVSVPITTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRLPENIENLM 598
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A2N1N172_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N172_9GLOM)

HSP 1 Score: 58.9 bits (141), Expect = 1.830e-8
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRVDAVL 213
            RR+C Y+   L+K++P  L S+ ++ IRK+AR SW Y++AY  GL+G      + K+  HR   + ++ ++
Sbjct:  433 RRICSYNFAELMKQVPEVLVSVPVTTIRKFARKSWRYMDAYDKGLEGRTAEWAVSKYKSHRRIPENIEKLM 503
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: U9TZ17_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TZ17_RHIID)

HSP 1 Score: 55.1 bits (131), Expect = 1.290e-7
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRV 201
            R  CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:   97 RNNCDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 163
[Close]
BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A1Y2GP19_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GP19_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 2.370e-7
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHR 183
            R  CDY+ K L + +PA L+S+++  IRK+AR S+ Y++AY  GL G +     KK+  HR
Sbjct:  145 RANCDYTFKGLQETIPAALASVTILSIRKYARRSFRYMDAYRKGLSGRVAELQAKKYKSHR 205
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BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Match: A0A015KJQ5_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015KJQ5_RHIIW)

HSP 1 Score: 55.1 bits (131), Expect = 2.690e-7
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQYRDLKKWTCHRSSTDRV 201
            R  CDY+ K L K +P  L+S+ L  IRK+AR SW +++AY  GL G      +KK+  HR   + V
Sbjct:  162 RNNCDYTFKGLEKMVPDALNSVPLIQIRKYARRSWRFMDAYKKGLKGIEALYAVKKYKSHRRIPNNV 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig666.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE2.360e-2771.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE9.770e-2771.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE9.940e-2771.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE1.400e-2670.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE1.140e-1272.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I1GI64_9GLOM5.290e-936.62Uncharacterized protein n=11 Tax=Rhizophagus TaxID... [more]
A0A2N1N172_9GLOM1.830e-835.21Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
U9TZ17_RHIID1.290e-741.79Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A1Y2GP19_9FUNG2.370e-742.62Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A015KJQ5_RHIIW2.690e-741.79Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig666contigP-littoralis_Contig666:60321..60533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UEZ3
Model size213
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-07
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791385.7346811-CDS-P-littoralis_Contig666:60320..605331680791385.7346811-CDS-P-littoralis_Contig666:60320..60533Pylaiella littoralis U1_48CDSP-littoralis_Contig666 60321..60533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig666.19.1prot_P-littoralis_Contig666.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig666 60321..60533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig666.19.1

>prot_P-littoralis_Contig666.19.1 ID=prot_P-littoralis_Contig666.19.1|Name=mRNA_P-littoralis_Contig666.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
RRVCDYSIKSLLKRLPATLSSMSLSLIRKWARISWLYVEAYATGLDGYIQ
YRDLKKWTCHRSSTDRVDAVL
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mRNA from alignment at P-littoralis_Contig666:60321..60533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig666.19.1 ID=mRNA_P-littoralis_Contig666.19.1|Name=mRNA_P-littoralis_Contig666.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig666:60321..60533- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTT
CGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCGACGGTTACATTCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig666:60321..60533-

>mRNA_P-littoralis_Contig666.19.1 ID=mRNA_P-littoralis_Contig666.19.1|Name=mRNA_P-littoralis_Contig666.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig666:60321..60533- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCGGATTT
CGTGGCTCTATGTTGAGGCGTATGCCACGGGGCTCGACGGTTACATTCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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