mRNA_P-littoralis_Contig117.22.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.22.4
Unique NamemRNA_P-littoralis_Contig117.22.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 533 bits (1372), Expect = 1.220e-184
Identity = 270/322 (83.85%), Postives = 285/322 (88.51%), Query Frame = 1
Query:   76 MSRPMDEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQA---RALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGEPSTFLQQAAYLTGVLCGATSDGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKVTRGKKRPMDGVTGTNTR 1032
            MSRPMDEEEPSLLLI+LD S AFWTKREA+RR+Q QRP+SGEVKL+SFQDTVEATLMFVESYLMMHRRNEVCFVACT RESTI+FPT AMEREQRSLG GSVSTKEFQ+CLW+GL  VVE+ HA D   G +EGCALAG LSKGLCYVN+KMRES SIQA   RALVLSG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLGE STFLQQAAYLTG        GLYLEHQGVGLAQYMFATFLPSQSCRKYLKLR QQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKK+ RGK + + G T  N R
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG--------GLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.390e-119
Identity = 182/212 (85.85%), Postives = 195/212 (91.98%), Query Frame = 1
Query:   76 MSRPMDEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGEPSTFLQQAAYLTG 711
            MSRPMDEEEPSLLLI+LD S AFWTKREA+RR+Q +RP+SGEVKL+SFQDTVEATLMFVESYLMMHRRNEVCFVACT RESTI+FPT AMEREQR+LG GSVSTKEFQDCLW+GL  VVE+ HA D   G +EGCALAG LSKGLCY+NRKMRES SIQARALVLSG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLGE STFLQQAAYLTG
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG 212          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 272 bits (695), Expect = 3.270e-83
Identity = 137/299 (45.82%), Postives = 195/299 (65.22%), Query Frame = 1
Query:   94 EEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEK--VHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGEPSTFLQQAAYLTGVLCGATSDGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKVT 984
            +E+PSLL+++ D S   W  ++A+  + +         + +FQ T+EA ++F++SYL+MHRRN++  VAC    S +VFPT A+E++  SL +G VS+K  Q C+ +GL  ++                   +A  LS+ LC+ +RK+ E+PS+Q R LV+   PD PE+YN+VMN IFSAQKA + VDC  +G  S F+QQAA +TG        G+Y   Q   + Q +    LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C TCGTRA PK +T
Sbjct:    2 DEDPSLLVVVFDASQGAWAAKDALAAQGST--------VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTG--------GVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLLT 284          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.320e-57
Identity = 121/309 (39.16%), Postives = 174/309 (56.31%), Query Frame = 1
Query:   91 DEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGEPSTFLQQAAYLTGVLCGATSDGLY---LEHQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRA--WPKKVTRGKKR 999
            D     LL+++LDT+  +W         + Q    G+   ++FQ  V +TL+FV +YL++HR N +  VA     + +++P    + EQ+     +  + +    + + L  +         P  T    A+A  LS+ LC++NR +RE   ++ R LV+  +PDV + Y S+MN IFSAQK  V VD C +  E S+FLQQAAYLTG        G+Y   ++H G  L QY+ + +LP  S RK LKL  Q SVDFRA CFCHK V+  A+VC VCLS+FCEF P+C+TCG R+   P K  + KKR
Sbjct:   23 DAVSEGLLVLVLDTNPRYWFA-------EGQARDGGD---SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYP----DAEQQDTSGSAEQSAKVNTSVLQKLRALGNAPIDASKPNAT----AIAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTG--------GIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQKKR 303          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.600e-57
Identity = 121/310 (39.03%), Postives = 174/310 (56.13%), Query Frame = 1
Query:   94 EEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHA-TDGP--EGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGEPSTFLQQAAYLTGVLCGATSDGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKVTRGKKRP 1002
            E    LL++++DT+   W    A           G    A  Q  + +TL+FV SYL++HR N +  +A    +S +++P      ++ + GS   + K          +GV++++   +D P         A+A  LS+ LC++NR + E P ++ R LV+  +PD+ E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTG        G+Y + +   GL QY+ + +LP  S RK LKL  Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+   PKK    KKRP
Sbjct:   15 EASEGLLVLVIDTNPVHWFAEGA-----------GPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPD---PNQEDTSGSAEQAAKVN--------AGVMQRLQELSDAPLDPAKPNRTAIAAALSRSLCFINRAINEEPELKPRILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTG--------GIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGLMKKRP 294          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 204 bits (518), Expect = 7.310e-57
Identity = 122/311 (39.23%), Postives = 177/311 (56.91%), Query Frame = 1
Query:   82 RPMDEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-EPSTFLQQAAYLTGVLCGATSDGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW---PKKVTRGKKR 999
            + +D  +  LL++++DT+  +W   E       QR   G     +FQ  V +TL+FV SYL++HR N +  +A    ++ +++P    +  Q      +  + +    + + L  + E       P  T    A+A  +S+ LC++NR + E   ++ R LV+  +PDV E Y S+MN IFSAQK GV VD  VL  + S+FLQQAAYLTG        G+Y + +   GL QY+ + +LP  S RK LKL  Q SVDFRA CFCHKRV+  A+VC VCLS+FCEF P+C+TCG R+     KK+ + KKR
Sbjct:   24 QQIDVVQEGLLVLVVDTNPQYWFVNE-------QRSGGGP---QAFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYP----DPNQGDTSGSAEQSAKVNAKVMQKLQALSELPVDPAKPNAT----AIAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTG--------GIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKMQQQKKR 308          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A8K1C5A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A8_PYTOL)

HSP 1 Score: 204 bits (520), Expect = 1.040e-56
Identity = 123/314 (39.17%), Postives = 173/314 (55.10%), Query Frame = 1
Query:   82 RPMDEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-EPSTFLQQAAYLTGVLCGATSDGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRA--WPKKVTRGKKRPMDG 1011
            + ++     LL+I++DT+   W     ++  Q Q          SFQ  + +TL+FV SYL++HR N +  +A     S +++P  A   +  + G+   S K   + + E L  + E       P  T    A+A  +S+ LC++NR + E+  +  R LV+  +PDV E Y S+MN IFSAQK  V VD  +L  E S F+QQAAYLTG        G+Y + +   GL +Y+ + +LP  S RK LKL  Q SVDFRA CFCH+ VV  AYVC VCLS+FCEF P+C+TCG R+   P K     KRP  G
Sbjct:   61 QTIETSSEGLLVIVIDTNPQQWFANAKLQNAQTQ----------SFQQLISSTLVFVNSYLLLHRNNRIVIIAAHAGRSEMLYPDPA---QNDTSGTAEQSLK-VTNRVMEKLKALSEIPMDPSKPNAT----AIAASISRSLCFINRAITENADLSPRILVIQKSPDVSEHYISIMNGIFSAQKKNVAVDACILSREHSPFMQQAAYLTG--------GIYYKPNDHSGLLEYLLSIYLPDPSLRKLLKLPTQDSVDFRAMCFCHQEVVSTAYVCPVCLSLFCEFKPICSTCGIRSRIQPSKKLPPSKRPKSG 348          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 202 bits (515), Expect = 1.320e-56
Identity = 119/302 (39.40%), Postives = 168/302 (55.63%), Query Frame = 1
Query:  109 LLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGEPSTFLQQAAYLTGVLCGATSDGLYLEHQGV-GLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKVTRGKKRP 1002
            LL++++DTS   W  +             G    A  Q  + +TL+FV SYL++HR N +  +A    +S +++P    + EQ      +    +    + + L  + +       P  T    A+A  +S+ LC++NR + E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTG        G+Y +  G  GL QY+ + +LP  S RK LKL  Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+   PKK    KKRP
Sbjct:   21 LLVLVVDTSPVHWFAQGG-----------GAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPEQEDTSGNAEQAAKVNAGVMQRLQQLSDAPLDPAKPNRT----AIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTG--------GIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGVLKKRP 295          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 202 bits (515), Expect = 1.360e-56
Identity = 127/322 (39.44%), Postives = 179/322 (55.59%), Query Frame = 1
Query:   61 NTT*IMSRPMDEEEPS---LLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHA-TDGP--EGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-EPSTFLQQAAYLTGVLCGATSDGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKVTRGKK 996
            N T   +      EPS   LL++++DT+   W  + A           G    A  Q  + +TL+FV SYL++HR N +  +A    +S +++P    E+E  S GS   + K          +GV++++   +D P         A+A  LS+ LC++NR + E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD  +L  E S+F+QQAAYLTG        G+Y + +   GL QY+ A +LP  S RK LKL  Q SVDFRA CFCH+ V+  A+VC VCLS+FCEF P+C+TCG R+   PKK    KK
Sbjct:    3 NATISQAHNAGSSEPSVEGLLVLVIDTNPVHWFAQAA-----------GTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPN--PEQEDTS-GSAEQAAKVN--------AGVMQRLQELSDAPLDNAKTNRTAIAASLSRALCFINRAIHEDPELRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTG--------GIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLKK 294          
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 197 bits (502), Expect = 9.200e-55
Identity = 118/300 (39.33%), Postives = 170/300 (56.67%), Query Frame = 1
Query:  109 LLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQDTVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSGSVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNRKMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGEPSTFLQQAAYLTGVLCGATSDGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKVTRGKK 996
            LL++++DT+   W        + N+    G     +FQ  + +TL+FV SYL++HR N +  +A    +S +++P  A +      GS   S K     + + L  + +       P  T    A+A  LS+ LC++NR M E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTG        G+Y + +   GL QY+ + +LP  S RK LKL  Q SVDFRA CFCH+ V+  A+VC VCLS+FC+F P+C+TCG R+   P    +GKK
Sbjct:   18 LLVLVIDTNPTNWF------AQGNEAADRG-----NFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHDDTS---GSAEQSAK-VNAVVMQRLQELSDTPMDCTKPNRT----AIAASLSRALCFINRAMNEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTG--------GIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGKK 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.22.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE1.220e-18483.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI1.390e-11985.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA3.270e-8345.82Putative general transcription factor IIH subunit ... [more]
A0A5D6XQC8_9STRA6.320e-5739.16Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A421GZV4_9STRA6.600e-5739.03Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
K3WG36_GLOUD7.310e-5739.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C5A8_PYTOL1.040e-5639.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GBC5_PHYRM1.320e-5639.40Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
M4BTB8_HYAAE1.360e-5639.44Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M6VU71_9STRA9.200e-5539.33Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:57737..62922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYW3
Preferred nameTFB4
PFAMsTfb4
Model size1889
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K03143
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03022,ko03420,ko04714,ko04723,ko04923,ko05203,map00561,map01100,map03022,map03420,map04714,map04723,map04923,map05203
KEGG ModuleM00098,M00290
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Exons7
Evalue1.08e-124
EggNOG OGsCOG5242@1|root,KOG2487@2759|Eukaryota
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
EC3.1.1.23
Descriptionphosphorylation of RNA polymerase II C-terminal domain
Cds size963
COG categoryKL
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.22.4prot_P-littoralis_Contig117.22.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 58588..62847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.2618754-UTR-P-littoralis_Contig117:57736..585871680789487.2618754-UTR-P-littoralis_Contig117:57736..58587Pylaiella littoralis U1_48UTRP-littoralis_Contig117 57737..58587 -
1680789487.358665-UTR-P-littoralis_Contig117:62847..629221680789487.358665-UTR-P-littoralis_Contig117:62847..62922Pylaiella littoralis U1_48UTRP-littoralis_Contig117 62848..62922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.2770293-CDS-P-littoralis_Contig117:58587..587261680789487.2770293-CDS-P-littoralis_Contig117:58587..58726Pylaiella littoralis U1_48CDSP-littoralis_Contig117 58588..58726 -
1680789487.2879-CDS-P-littoralis_Contig117:59086..592761680789487.2879-CDS-P-littoralis_Contig117:59086..59276Pylaiella littoralis U1_48CDSP-littoralis_Contig117 59087..59276 -
1680789487.3006387-CDS-P-littoralis_Contig117:59846..600031680789487.3006387-CDS-P-littoralis_Contig117:59846..60003Pylaiella littoralis U1_48CDSP-littoralis_Contig117 59847..60003 -
1680789487.309529-CDS-P-littoralis_Contig117:60491..605921680789487.309529-CDS-P-littoralis_Contig117:60491..60592Pylaiella littoralis U1_48CDSP-littoralis_Contig117 60492..60592 -
1680789487.3201156-CDS-P-littoralis_Contig117:61349..614831680789487.3201156-CDS-P-littoralis_Contig117:61349..61483Pylaiella littoralis U1_48CDSP-littoralis_Contig117 61350..61483 -
1680789487.3350096-CDS-P-littoralis_Contig117:61945..620791680789487.3350096-CDS-P-littoralis_Contig117:61945..62079Pylaiella littoralis U1_48CDSP-littoralis_Contig117 61946..62079 -
1680789487.3486195-CDS-P-littoralis_Contig117:62739..628471680789487.3486195-CDS-P-littoralis_Contig117:62739..62847Pylaiella littoralis U1_48CDSP-littoralis_Contig117 62740..62847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.22.4

>prot_P-littoralis_Contig117.22.4 ID=prot_P-littoralis_Contig117.22.4|Name=mRNA_P-littoralis_Contig117.22.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=321bp
MSRPMDEEEPSLLLILLDTSCAFWTKREAMRRKQNQRPKSGEVKLASFQD
TVEATLMFVESYLMMHRRNEVCFVACTVRESTIVFPTLAMEREQRSLGSG
SVSTKEFQDCLWEGLSGVVEKVHATDGPEGTEEGCALAGGLSKGLCYVNR
KMRESPSIQARALVLSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGEP
STFLQQAAYLTGVLCGATSDGLYLEHQGVGLAQYMFATFLPSQSCRKYLK
LRKQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPK
KVTRGKKRPMDGVTGTNTRS*
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mRNA from alignment at P-littoralis_Contig117:57737..62922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.22.4 ID=mRNA_P-littoralis_Contig117.22.4|Name=mRNA_P-littoralis_Contig117.22.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5186bp|location=Sequence derived from alignment at P-littoralis_Contig117:57737..62922- (Pylaiella littoralis U1_48)
ATGGCTGATCGCTGTTTGCTCTGCACGTTTTCCGTGCTCCAGCTTACGGC ATGCCCTACCAACACGACATAGATCATGTCCCGGCCAATGGACGAGGAGG AGCCGAGTCTTCTGCTGATTCTTTTGGACACGTCTTGTGCCTTCTGGACG AAACGCGAGGCTATGAGGCGAAAACAAAATCAGGCATGAAACCATTCCTG ACATGTCCACTTCGTGATATCTTCACATCGTGTGATTCCATCACACCATT GCGGCGCACTGCTGTAAATAGGAAGGAGCCGCAGCACCCAGGCAGCCTGC GTGCGCTGTCTATTTACACCCTCTCGTTTGCCCTACTTACTCCATAACTG GTGTAAGTGCAAGTATTACAAGAGAGAAGTCATAACCTCCTGCTGTTGCA CTCTCTGGACCTGCAGGCAGGTAGGTGATAGTCCAAGTCTCTGACAAATG ACACAGGTCGCAAAGTCGCACCGCATCTGCACAATCTGCAGACACGAAGA GCTTATGCATGCAAGCATCACCTCCACTGCTGCTTCCGTCACCTCTACTA CCGTATTCATTACTTTGTCGGCGCTGCAAGGGGTTTCTGCGCGATACATG AGGTTATGCAATGCCCAGCTACAATGCCCGGCATGGATGAAGCTCATATC AACAGCCTCGTAGCGTAACTCGCCCCGAGTTCCTTGCAGTACGGCCGAAC GGTGTGTATTCTATTCCAGCACGAACCCTGGCATCCGAGTATTGCCGAAG CATGACGCTGAAGCGACAAAGTGCCACTCCTGTCGTGTCTTGTCTTCGGT GCCATGGCATCTCTGCGTGTATCATCTCTGCGTGTATCTCCAGCGGCCAA AGTCAGGGGAGGTGAAGCTGGCGTCCTTCCAAGACACGGTGGAGGCTACC CTCATGTTCGTCGAGAGCTACCTCATGATGCACAGACGGAACGAGGTGTG CTTCGTCGCGTGCACTGTCCGAGAAAGGTGAAGAAGAGGGTGCATGCAGC AAGACCTCACGGCCATTGACCAAGGACAAATAATTTCGCGCCTCCTACGT TCGTGTCACTCATGCGGTTTGTGTGGAAATGTTCGTGAAGAGATACATAA AGGCAAACTGGTATGATATGTATGCATGTATCGTGATGAAAAAAAAAAGA AGAGAGAGAGAACGGTTGTTCCCACTGCTCTCGAGGCGCTTCAAGACGCG TACGTATGAAGCGAAAGGGTATGAGCGTCGCAGCAGCAAATATACCCAGA GCACCAGTAGCATAACCGCCCATGTGCGAAGCGTACGAGGTCCCACCCGC TGGCTCGAATGTCGCGCTCGTACATGGCTTGGCCCGATCACATAGCTTGG GCGGCAGCGCAGTATACTGTGACAGAGTGTCATTGACTGAAAATCTTCTC CGCCATCTGTATTGGCTTATGCTACCGTACTCGGCCCAGCACTATCGTCT TCCCAACACTGGCGATGGAGCGAGAGCAGCGGTCGCTCGGCAGCGGTTCT GTGAGCACTAAGGAGTTCCAGGACTGCTTGTGGGAAGGGCTGAGCGGAGT AGTCGAGAAGGTGCATGCCACAGGTAATAGAAACATCCCCTCCTCGATCG GCAGTCCTGGTTCAATGGCTTTCTAAGTACTGTTGTACCTACCTGCATCC AACAGAGACTCACTGGAATTTCAAAGCTCTGCGCCTCTGTGCCCGCTTAA GAGTTGGATGCTTTTTGCGTTGTCTTCTGCGTGAAAGCTGTACATTGCTC ATTGGAGGTGTTCTGCGAGGTGTTCAGCCGAGTACCGAAGGAGCACACGC CACTGGCAATGAATGGTGCTTGAGCGCCGAAGTGCACATGGTTCCCATCG TGTGCGGATCGAACAAGGCAGTGTTTGTGGTCTTTCTGACGGAAGGCTCG ACACTGTTGCTGCTCCTTTTGTCCAAATGCTATTTTAGCCCAGCCTGCTG TATTCGTGTTCATTTCCTGGTACGTTCTGGCGTTCAGACATTGGAAAGTG GAGCTTGTGTATCATAGCAGCTGCAATATGTGTGTATTTGTACCGCCTTG AACGAATACGCGGAATGCTCCATTCTACAGTATTGTTGATGTCTTCTCCA TGTCACCTTGCCACGTATTGGCGTTGTAAATGTTCGTTCTGCATAAATTG CACAGCCCGTGCACATACCACGCCGCAACAGTATTTAGCGATTGCACACA ACGATTTGATTGTTTTTTTTTTGTTTTTCCCCCCGCACTGCTGCTTTTGC TCTATCGACCGACTATTCGGACGGCCGGCTGCTCGGTCGGTACTTGCGTT TTCGTCTTCATCTTCTTTTTTTCCGGAAAGACGGGCCAGAAGGAACGGAG GAGGGTTGTGCGCTGGCGGGAGGCCTGTCGAAGGGTCTATGCTACGTCAA CCGAAAAATGCGCGAGTCCCCATCGATTCAGGTTAAGTGCTTTCTTTCGT GTTGCTGTTGTTTAAGCGTCAGAGAGAGGCACTTCGATCTATCAGCGGTA GGCCCCGTTTTGCGTTTGGGTGCTCTCTGTCCCAACCGCCGCTGCGTCTG ATTTGCTGTGGGGGCAAGCGAGAAAGTTTGCGATGATCTGCCGATTGACG ACCCTAAAATAATTGTACCAGTGTGCATCTTAAAAAGTTTGAGTCCTACA GAGGCGCAGTTGAACCTTACCAGGTATGTTTCAGTATCGTTCCGGCACCT GAGAGGCTCAAGACACCATGCACGGCATCTTCAAAATGGTCGAGCTCCTG CTGCGTGGAGCGGGACCGAGGGGGACAGGAGGATCGCTGTTGTCAGGCTG TGGTGGCTGTGGCGACGCGCCGAAAGTCGGCGTGCCTGAGAACGACCCAC CGACTGTGTACCTGAATTTGGCCGTGTACCCCCTCCCGCTCCGTGTGCTT GATTGTGACAATACTATAGGCGCGCGCCCTGGTCCTGTCCGGTGCACCCG ACGTACCGGAGACATACAATTCGGTCATGAACGCCATATTTTCGGCGCAG AAGGCCGGGGTTTTGGTGGACTGCGCCGTGTTGGGGGAGCCGTCTACTTT TCTTCAGCAAGCAGCTTACCTCACGGGTGAGAGAAACTTATCAAGAGCAA TTTGTTGGACGAATCACGATGCTTCAGCGTACCCTTCCCGTTGGGGGTTG GTACGGAAATATGATGGCGTGGTGGTGCAAGAACGAATGCAGGCAAATGG GTGCCTAGGGTATTGGCGGGGCGGTGTGCCACTACTTTCTTGGTGGGTTA GTCGGCGGCCTTTGAATGTACGTGTGACGCTTTCTTAATCTGAAGTGCTC TGGCGATTGAAACACGTACGATTTAATTTTGGTCTTTCCAATTTCTATTG CCGGGCGGCCTTTACGTCTCTGCCGCCCGCGGGGCCTTCTATGCTGACAT GAACCATATGTGTACGGAAAGGTCTTCGCCGAGGTTTTGTGACTGTCATG GCTTTTGTCGATTCCCTGCAAAACATTTTCAACACCTGCACGTACGACGT CGTGCCGTTCGATGTGGTTTACGATACACTGGCTGGCTGAGTGTATGCTC CTCCACCATTGTACAGCAAGTAGTGCAATTGTTTGGCGATACCCTGTCGC GGGTATACACGGGGTTACACGCCGACTATAAAATTCGACTGACTAGGTGT TTTGTGTGGGGCCACCTCAGACGGGCTGTACCTGGAGCACCAAGGAGTCG GCCTCGCGCAGTACATGTTCGCCACCTTCTTGCCGAGCCAGAGCTGCCGA AAGTACCTCAAACTTCGCAAGCAGCAGAGCGTGGACTTCAGAGCCGCGTG CTTCTGCCACAAGCGCGTCGTCGATATCGCCTACGTGTGAGCAGCCTGCC CTGTTCATCGCGTGTAATACGGCTTGTAGAGCAGTCGTGTGTAGGCTTCA CGGTCTTAAAAGGCAAATCCAGCAGTCCTTTGCAAGTGTGAGTGTCATTT GTAGCGTCGTTTTACTTTAAATCCACGCCGTGATAATGCGTTGACCCGTT GCTGCTGCTGCTTGCTGTTGCAAGGTTGCGGCGATATTCGTCGGCTTGCT GCATCAACATCCTGTGCTCTATTCGACTGTGGTTCATCATCTGCAAATGA CAACGACCCGTCCCTCCTCCCTGTTCTCCTGATGCCTTCGCGTGTCGTTC CCCCTATGCTTGCACGTGTCGGCATGATCGTCCGTTTTCTCCGCAGGTGC TCGGTGTGTCTATCTGTATTTTGCGAGTTTTCTCCCGTTTGCACCACGTG CGGCACACGGGCTTGGCCGAAAAAGGTCACGCGGGGTAAGAAAAGGCCGA TGGATGGGGTGACCGGAACCAACACACGTTCGTGACAACATCGTAGTTAC ATTGGTAACGTTTGTGGTTTGTTTGGTACTTCTGTCAATACAGGGTGTCA TATTTTGTTAGAATATTGTGTCCGTCGTGGATGTGCTAACTGTCAGACGA GTGGTCGAACGTTGTGACTCCAATTTGGTTGGTGTCTCCCTGTCCTCCCC GCGGGAGAGCACAGAACTTGAGATTTTCGTAACTTTTCGGGTACAGATTG CGACGAGAGTCGGCGGAGCCTTTTGACGAGCACAGGCGGATCGACGGCCG CGACGCCGTGGCCGTAGCTGTGCCCGATCACGAGTACAGGGTTTGAGTCA GATTTGGAGAAGAGCTTACGCTTCGAGGGCCCCGCACTCTGACGAGATGT CAGACTAGAGTGGAACAAATCGAGCCTTGACAATTTGTGTTGAGGTTCGT AGACGTTGGCTTCAAATTTTCAGTTTTTCAAAAATGGTTTCTTTAGTCCA GATAGTGACCAAACAGTGCAAGACTTCGGATATATTTGGCGCTTGTGACG TGAACTGCAGAGGTTTTTTGTATACGCCGCAAGGTTGTGTGCATGTTTCT TTGAAAGTCTGTCGTTTCAAAGCTTGGTAAATGAGCAACTTGCACCGGTC GGAGACGATACACTAGAATATCTATGGAATATGTGGTGCTTCAAGCTGTC GACCCTCGAATACATCGATAGTCAAATATGTTGCCGAGGGCGATGCTCAA AAAGAGCATATTCGCAAGCCCGAACAATAATCTCAACAAGAGTCTATTTC CAAACCTGCACCACATACCCTGCCGCTGAAGGAGATCGGTGAAGAACCCG ATTGGAAGCAATATATCGCCACGAAATATCGGCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:57737..62922-

>mRNA_P-littoralis_Contig117.22.4 ID=mRNA_P-littoralis_Contig117.22.4|Name=mRNA_P-littoralis_Contig117.22.4|organism=Pylaiella littoralis U1_48|type=CDS|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig117:57737..62922- (Pylaiella littoralis U1_48)
ATGTCCCGGCCAATGGACGAGGAGGAGCCGAGTCTTCTGCTGATTCTTTT
GGACACGTCTTGTGCCTTCTGGACGAAACGCGAGGCTATGAGGCGAAAAC
AAAATCAGCGGCCAAAGTCAGGGGAGGTGAAGCTGGCGTCCTTCCAAGAC
ACGGTGGAGGCTACCCTCATGTTCGTCGAGAGCTACCTCATGATGCACAG
ACGGAACGAGGTGTGCTTCGTCGCGTGCACTGTCCGAGAAAGCACTATCG
TCTTCCCAACACTGGCGATGGAGCGAGAGCAGCGGTCGCTCGGCAGCGGT
TCTGTGAGCACTAAGGAGTTCCAGGACTGCTTGTGGGAAGGGCTGAGCGG
AGTAGTCGAGAAGGTGCATGCCACAGACGGGCCAGAAGGAACGGAGGAGG
GTTGTGCGCTGGCGGGAGGCCTGTCGAAGGGTCTATGCTACGTCAACCGA
AAAATGCGCGAGTCCCCATCGATTCAGGCGCGCGCCCTGGTCCTGTCCGG
TGCACCCGACGTACCGGAGACATACAATTCGGTCATGAACGCCATATTTT
CGGCGCAGAAGGCCGGGGTTTTGGTGGACTGCGCCGTGTTGGGGGAGCCG
TCTACTTTTCTTCAGCAAGCAGCTTACCTCACGGGTGTTTTGTGTGGGGC
CACCTCAGACGGGCTGTACCTGGAGCACCAAGGAGTCGGCCTCGCGCAGT
ACATGTTCGCCACCTTCTTGCCGAGCCAGAGCTGCCGAAAGTACCTCAAA
CTTCGCAAGCAGCAGAGCGTGGACTTCAGAGCCGCGTGCTTCTGCCACAA
GCGCGTCGTCGATATCGCCTACGTGTGCTCGGTGTGTCTATCTGTATTTT
GCGAGTTTTCTCCCGTTTGCACCACGTGCGGCACACGGGCTTGGCCGAAA
AAGGTCACGCGGGGTAAGAAAAGGCCGATGGATGGGGTGACCGGAACCAA
CACACGTTCGTGA
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