mRNA_P-littoralis_Contig117.19.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.19.3
Unique NamemRNA_P-littoralis_Contig117.19.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: D7FYW5_ECTSI (Flavine reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW5_ECTSI)

HSP 1 Score: 478 bits (1231), Expect = 5.320e-161
Identity = 240/284 (84.51%), Postives = 260/284 (91.55%), Query Frame = 1 
Query:    1 MVTRGLVSLLCLGSATGFMSPFIGRMHSARNTGSCVSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARGEMA 852
            MV R LV+LLCLGS+T F++PF+GR+HSARNTGSCV+MMAG IAVFGGNGLTGSEVVYQAL+RGDKVTAFCRDPSKL+ P G G  KAGTPL +ENLKTV QGTVTDLDDVRKVF++G +TGV +ALGGKTKDVG TMLTDGTSN+ITAMKEKGVK+VA VTSIG GDSE QAPFFFKVLMYTAMKSIF DKN QE LFF GPG DL+FT+VRPGGLTVEPPTG INVIKGEAGSISRADVADFILGA+S+ DFPYLKQAPCISSVGGTSWVKDRSGAARGEMA
Sbjct:    1 MVARTLVALLCLGSSTAFITPFVGRVHSARNTGSCVTMMAGNIAVFGGNGLTGSEVVYQALQRGDKVTAFCRDPSKLVYPPGVGVTKAGTPLSNENLKTV-QGTVTDLDDVRKVFSNGPITGVAIALGGKTKDVGTTMLTDGTSNIITAMKEKGVKKVATVTSIGTGDSENQAPFFFKVLMYTAMKSIFADKNEQEKLFFDGPGQDLDFTIVRPGGLTVEPPTGVINVIKGEAGSISRADVADFILGAISDKDFPYLKQAPCISSVGGTSWVKDRSGAARGEMA 283
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A836C907_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C907_9STRA)

HSP 1 Score: 370 bits (949), Expect = 8.450e-119
Identity = 196/273 (71.79%), Postives = 216/273 (79.12%), Query Frame = 1 
Query:   34 LGSATGFMSPFIGRMHSARNTG-SCVSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARGEM 849
            LG A  F+S       +A+  G    S +   IAVFG +GL GSEV YQAL+RG+ V AF RDPSKL+VP GSGG  AG PL+S+ LK V QG+V   DDV K FA GDVTGVVVALGGKTKDVGKTMLTDGTSN+I AMK  GVKR+AAVTSIGAGDSE QAPFFFKVLM+T MK+IFEDKN QE LF +GPG+DLEFT+VRPGGLTVEPPTG INVI GEAGSISRADVADF LGAV E  FPYL++ PCISSVGGTSW KDRS AARG M
Sbjct:   12 LGPAAAFVSTSSFAPRTAQGAGVRHASPLQMSIAVFGASGLLGSEVTYQALQRGEDVIAFLRDPSKLVVPAGSGGPDAGKPLKSDKLKVV-QGSVVSYDDVTKAFAGGDVTGVVVALGGKTKDVGKTMLTDGTSNIIKAMKANGVKRIAAVTSIGAGDSENQAPFFFKVLMFTVMKNIFEDKNNQEALFTRGPGSDLEFTIVRPGGLTVEPPTGVINVISGEAGSISRADVADFCLGAVLEEGFPYLRKTPCISSVGGTSWTKDRSAAARGGM 283
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S1TBA0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1TBA0_9CHLO)

HSP 1 Score: 324 bits (831), Expect = 2.380e-101
Identity = 172/240 (71.67%), Postives = 190/240 (79.17%), Query Frame = 1 
Query:  106 VSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDR 825
            + + A KIAV GG G TGSE VYQALE GD+V    R P+ L+VP GSGGAKAG+ L SE L TV QG VT   DV KV +D DV GVV+ALGGKTKDVG TMLTDGT  VI AM+ KGVKRV+ VTSIGAGDSE+QAPFFFKVLM+T MKSIF DKN QEDLF  GPG DLE+ +VRPGGL  +PPTG INVI GEAGSI RADVA F LGA+++ DFPYL QAPCISSVGGTSWVKDR
Sbjct:   35 LQVCAAKIAVIGGTGGTGSECVYQALEAGDEVVTLVRTPANLVVPPGSGGAKAGSKLESERL-TVVQGNVTVQSDVDKVISD-DVDGVVIALGGKTKDVGPTMLTDGTRCVINAMQAKGVKRVSVVTSIGAGDSEKQAPFFFKVLMFTVMKSIFNDKNNQEDLFISGPGKDLEYCIVRPGGLLTDPPTGVINVIDGEAGSIPRADVAAFCLGALTQKDFPYLGQAPCISSVGGTSWVKDR 272
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A835Z045_9STRA (Flavine reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z045_9STRA)

HSP 1 Score: 320 bits (821), Expect = 2.000e-100
Identity = 167/243 (68.72%), Postives = 193/243 (79.42%), Query Frame = 1 
Query:  127 IAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFK--GPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARGEM 849
            IAVFG +GL GSEV YQAL++G KV AF RDPSKL VP GSGG +AG PL  +NLK V QG+VT+L+DV K FADGDVT VVV+LGG+T  VGKTMLTDGT+N+I AMK   VKR+A VTSIG GDS  QAPF F++LM T M+ +  DKN QE LF    G G DL++ +VRPGGLTVE PTG INVI G+AGSI+RADVADFILGAV +N FPYL++APCISSVGGT W KDRS +ARGEM
Sbjct:    2 IAVFGASGLLGSEVTYQALKQGHKVVAFVRDPSKLTVPKGSGGDEAGKPLTGDNLKIV-QGSVTNLEDVDKAFADGDVTSVVVSLGGRTSKVGKTMLTDGTTNIINAMKAHNVKRIAVVTSIGVGDSYSQAPFAFRMLMNTVMRVMIADKNNQEALFTSADGIGKDLDYVIVRPGGLTVEKPTGVINVIDGQAGSIARADVADFILGAVLDNAFPYLRKAPCISSVGGTGWTKDRSASARGEM 243
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A0G4GNW0_9ALVE (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GNW0_9ALVE)

HSP 1 Score: 318 bits (816), Expect = 3.510e-99
Identity = 164/234 (70.09%), Postives = 189/234 (80.77%), Query Frame = 1 
Query:  124 KIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDR 825
            KIA+FG +G TG EV Y+AL++G KV AF RDP+KL +P GSGG  AG PL+++ L  V QG VT+L+DV+KVF  GDV GVV+ALGGKTKDVGK+MLT GT NVI AM+EKGVKRVA V+SIGAGDSE+QAP FFKVLMYT MK IF DKN QE LF  GPG+DLE+ +VRPGGL V P TG INVI GEAGSI RADVADF LGAV E DF Y+++APCISSVGGT WVK +
Sbjct:   35 KIAIFGASGKTGQEVAYRALDQGCKVAAFVRDPAKLCIPQGSGGDLAGQPLKNDGL-AVFQGDVTNLNDVKKVFEKGDVDGVVIALGGKTKDVGKSMLTAGTKNVIEAMREKGVKRVAVVSSIGAGDSEKQAPLFFKVLMYTVMKDIFADKNNQERLFINGPGSDLEWCLVRPGGLGVGPATGVINVIDGEAGSIMRADVADFCLGAVLEKDFEYVRKAPCISSVGGTGWVKQK 267
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S4D495_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D495_HETAK)

HSP 1 Score: 318 bits (815), Expect = 4.020e-99
Identity = 161/237 (67.93%), Postives = 189/237 (79.75%), Query Frame = 1 
Query:  109 SMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVK 819
            S+    IAVFGG+G TG+E VYQALE+G KVT   RDPS++ +P GSGGAKAG+P  ++ L  + QG VT+  DV KVFA GD++GVVVALGGKTKDVG TMLTDGTSNVI AMKE G KRV+ VTSIGAGDSE+QAP FFK LMYT M+ IF DKN QE LF  GPG+DLE+ +VRPGGL V PPTG INVI G+AGSI RADVA F+LGA+++ +F +L+Q PCISSVGGT WVK
Sbjct:   20 SLNMNHIAVFGGSGKTGAECVYQALEQGYKVTVLARDPSRVCIPEGSGGAKAGSPFSNDKLNVI-QGDVTNAADVSKVFAGGDISGVVVALGGKTKDVGPTMLTDGTSNVIKAMKESGTKRVSVVTSIGAGDSEKQAPIFFKALMYTVMRGIFADKNNQEGLFLNGPGSDLEYCIVRPGGLGVGPPTGVINVIDGKAGSIQRADVATFLLGALADPNFEHLRQTPCISSVGGTGWVK 255
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S4AAM9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAM9_9STRA)

HSP 1 Score: 318 bits (814), Expect = 9.080e-99
Identity = 174/263 (66.16%), Postives = 197/263 (74.90%), Query Frame = 1 
Query:   76 MHSARNTGSCVS-----MMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARGEM 849
            M S R   SC S     +    IAVFG +GLTGSE V+QAL  GDKV    R+PS L VP GSGGA A  PL++ENL T+  G VT   DV KVF +G+V GV+VALGGKT DVG+TMLTDGT+NVI AMKEKGVKR+A VTSIGAGDSE QAPFFFKVLM+TAMK IF DKN QE+       + LE+ +VRPGGLTV+PPTG +NVI GEAGSI RADVA F L AV  +DFPY+ +APCISSVGGTSW KDRS AARGEM
Sbjct:   27 MGSGRIQNSCASDASTTLCMKTIAVFGASGLTGSEAVFQALNEGDKVIGLTRNPSNLKVPAGSGGADADKPLQNENL-TMIAGDVTKKGDVDKVFENGEVDGVIVALGGKTADVGETMLTDGTNNVIAAMKEKGVKRLAVVTSIGAGDSENQAPFFFKVLMWTAMKKIFLDKNSQEEATVN---SGLEYCIVRPGGLTVDPPTGVVNVIDGEAGSIPRADVAQFCLDAVRMDDFPYIGKAPCISSVGGTSWTKDRSKAARGEM 285
[Close]
BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S0QY81_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QY81_9CHLO)

HSP 1 Score: 314 bits (804), Expect = 7.380e-97
Identity = 165/241 (68.46%), Postives = 191/241 (79.25%), Query Frame = 1 
Query:  106 VSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGA-KAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDR 825
            V   AGKIAVFGG G TGSE VYQALE+G +V    R PS + +P GSGG  KAG P  + NL TV QG VT+  DV KV  + DVTGVV++LGGK+KDVG+TMLTDG++NVI AMKEKGVKRVA VTSIGAGDS  QAP  FK+LM T MK +F DKN QE LF +GPG+DLE+ +VRPGGLT++ PTG +NVI+GEAGSI+RADVA F LGA+ + DFPYLKQAPCISSVGGTSWVKDR
Sbjct:   69 VMASAGKIAVFGGTGATGSETVYQALEQGYEVVTLARTPSNMGIPPGSGGEDKAGKPFDNPNL-TVIQGDVTNAADVAKVITE-DVTGVVISLGGKSKDVGETMLTDGSTNVIAAMKEKGVKRVAVVTSIGAGDSAGQAPLVFKLLMMTVMKKVFNDKNNQEKLFLEGPGSDLEYCIVRPGGLTLDAPTGVVNVIEGEAGSIARADVAAFCLGAILDKDFPYLKQAPCISSVGGTSWVKDR 307
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BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S1VPY9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPY9_9STRA)

HSP 1 Score: 311 bits (798), Expect = 1.690e-96
Identity = 170/274 (62.04%), Postives = 199/274 (72.63%), Query Frame = 1 
Query:   25 LLCLGSATGFMSPFIGRMHSARNTGSCVSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARGE 846
            L  LG AT F++P   R    R+T S    MA  IAVFG +GLT +E VYQAL  GDKV    R+P+   +P GSGG+KAG P    NL TV  G VT   DV KVFA+  + GV+VALGGKT DVG+TMLTDGT N+I  MKEKGVKR++ VTSIG GDSE QAPFFFKVLM+TAMK IF DKN QE+       + L++ +VRPGGLTVEPPTG INVI GEAGSI+RADVA F L +V+ +DFPY+ + PCISSVGGT+WVKDRS AARGE
Sbjct:   13 LALLGGATAFVAP---RPVQVRDTSSL--QMAKTIAVFGASGLTATECVYQALANGDKVVGLTRNPANCKIPQGSGGSKAGEPYDDPNL-TVIGGDVTKKADVEKVFAEDTIDGVIVALGGKTSDVGETMLTDGTKNIIECMKEKGVKRISVVTSIGTGDSEDQAPFFFKVLMWTAMKKIFTDKNAQEEAV---AASGLDYCIVRPGGLTVEPPTGVINVIDGEAGSIARADVAQFCLDSVTVDDFPYIGKTPCISSVGGTAWVKDRSKAARGE 277
[Close]
BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Match: A0A7S2Y077_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y077_9STRA)

HSP 1 Score: 310 bits (795), Expect = 5.520e-96
Identity = 161/265 (60.75%), Postives = 195/265 (73.58%), Query Frame = 1 
Query:   52 FMSPFIGRMHSARNTGSCVSMMAGKIAVFGGNGLTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTVKQGTVTDLDDVRKVFAD-GDVTGVVVALGGKTKDVGKTMLTDGTSNVITAMKEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFFKGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVSENDFPYLKQAPCISSVGGTSWVKDRSGAARG 843
            F   F    +  R+  SC ++    +A+FGG G TGSE VYQALE+G  V    R PSK++VP GSGG++AG PL +  L TV QG+VT+  DV KVFA   D  G ++ALGGKTKDVGKTMLTDG+SNVI +M  KG+KRV+ VTSIGAGDSE+QAP FFK LMYT MK IF DKN QE LF +G G DL++ +VRPGGL V PPTG INVI+GEAGSI+RADVA F LGA+++ +FPY+K+ PCISSVGGTSWVK +     G
Sbjct:   17 FSDAFRTNTNLFRSVRSCNTLQMSAVAIFGGTGKTGSECVYQALEQGLDVVVLARSPSKMVVPEGSGGSEAGKPLENPKL-TVLQGSVTEAADVEKVFASRDDFIGSIIALGGKTKDVGKTMLTDGSSNVIDSMLAKGIKRVSVVTSIGAGDSEKQAPLFFKALMYTVMKGIFTDKNNQEKLFLEGKGKDLDYCIVRPGGLGVGPPTGVINVIEGEAGSIARADVAAFCLGAITDPEFPYIKKTPCISSVGGTSWVKSKEAGFDG 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.19.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYW5_ECTSI5.320e-16184.51Flavine reductase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836C907_9STRA8.450e-11971.79Flavine reductase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S1TBA0_9CHLO2.380e-10171.67Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A835Z045_9STRA2.000e-10068.72Flavine reductase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A0G4GNW0_9ALVE3.510e-9970.09NAD(P)-bd_dom domain-containing protein n=1 Tax=Ch... [more]
A0A7S4D495_HETAK4.020e-9967.93Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4AAM9_9STRA9.080e-9966.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0QY81_9CHLO7.380e-9768.46Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S1VPY9_9STRA1.690e-9662.04Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2Y077_9STRA5.520e-9660.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:49032..56782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYW5
PFAMsNAD_binding_10
Model size2499
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons8
Evalue1.04e-169
EggNOG OGs29JK8@1|root,2RSUR@2759|Eukaryota
Ec32 ortholog descriptionFlavine reductase
Ec32 orthologEc-19_002720.1
DescriptionNAD(P)H-binding
Cds size855
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.19.3prot_P-littoralis_Contig117.19.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 50676..56782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.148985-UTR-P-littoralis_Contig117:49031..506751680789487.148985-UTR-P-littoralis_Contig117:49031..50675Pylaiella littoralis U1_48UTRP-littoralis_Contig117 49032..50675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789487.1590683-CDS-P-littoralis_Contig117:50675..508341680789487.1590683-CDS-P-littoralis_Contig117:50675..50834Pylaiella littoralis U1_48CDSP-littoralis_Contig117 50676..50834 -
1680789487.173856-CDS-P-littoralis_Contig117:51256..513281680789487.173856-CDS-P-littoralis_Contig117:51256..51328Pylaiella littoralis U1_48CDSP-littoralis_Contig117 51257..51328 -
1680789487.1832967-CDS-P-littoralis_Contig117:51660..517501680789487.1832967-CDS-P-littoralis_Contig117:51660..51750Pylaiella littoralis U1_48CDSP-littoralis_Contig117 51661..51750 -
1680789487.193037-CDS-P-littoralis_Contig117:52304..524141680789487.193037-CDS-P-littoralis_Contig117:52304..52414Pylaiella littoralis U1_48CDSP-littoralis_Contig117 52305..52414 -
1680789487.2017634-CDS-P-littoralis_Contig117:52773..528941680789487.2017634-CDS-P-littoralis_Contig117:52773..52894Pylaiella littoralis U1_48CDSP-littoralis_Contig117 52774..52894 -
1680789487.2127936-CDS-P-littoralis_Contig117:53035..531041680789487.2127936-CDS-P-littoralis_Contig117:53035..53104Pylaiella littoralis U1_48CDSP-littoralis_Contig117 53036..53104 -
1680789487.2209446-CDS-P-littoralis_Contig117:53687..538231680789487.2209446-CDS-P-littoralis_Contig117:53687..53823Pylaiella littoralis U1_48CDSP-littoralis_Contig117 53688..53823 -
1680789487.2292335-CDS-P-littoralis_Contig117:56684..567821680789487.2292335-CDS-P-littoralis_Contig117:56684..56782Pylaiella littoralis U1_48CDSP-littoralis_Contig117 56685..56782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.19.3

>prot_P-littoralis_Contig117.19.3 ID=prot_P-littoralis_Contig117.19.3|Name=mRNA_P-littoralis_Contig117.19.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=285bp
MVTRGLVSLLCLGSATGFMSPFIGRMHSARNTGSCVSMMAGKIAVFGGNG
LTGSEVVYQALERGDKVTAFCRDPSKLMVPVGSGGAKAGTPLRSENLKTV
KQGTVTDLDDVRKVFADGDVTGVVVALGGKTKDVGKTMLTDGTSNVITAM
KEKGVKRVAAVTSIGAGDSEQQAPFFFKVLMYTAMKSIFEDKNRQEDLFF
KGPGNDLEFTVVRPGGLTVEPPTGTINVIKGEAGSISRADVADFILGAVS
ENDFPYLKQAPCISSVGGTSWVKDRSGAARGEMA*
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mRNA from alignment at P-littoralis_Contig117:49032..56782-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.19.3 ID=mRNA_P-littoralis_Contig117.19.3|Name=mRNA_P-littoralis_Contig117.19.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7751bp|location=Sequence derived from alignment at P-littoralis_Contig117:49032..56782- (Pylaiella littoralis U1_48)
ATGGTGACTCGCGGACTAGTTTCACTGCTGTGCCTGGGATCGGCCACGGG
CTTCATGTCTCCCTTTATTGGGAGGATGCACTCAGCGCGAAACACCGGGT
AAGCTCTTGACGCTGCTGTAATGTGATCGACACCTCGGAAGCACACCATC
AGAATGTAATAGCATTCTTACTCAGAGGGAGATTGGAGAATGCGCCGCGT
TTTTTCCCCCGACCTGGACCAAAAGTACTCTTTCAATATTTGATCTGACG
ATGAATGGGTTGACGGTTGTTGGCGTTTGCCAAGCTGGCGGTGGCCAACA
CCTGACAAGACCTGGCAAGAGATGCAGTAGACCCAGTGATTCGTGTCTGC
ATCACAGGTCGGACGTGCGTTCTTCGTGCTACCTACATATTGGTCTGCTC
CATCTGGTTTTGATCTACGGTACCTCCCTCCTGAGACAACTTACCACGGC
AGCAGCAGCGGGAAGATGCGCAGCCACGCTGCCGCGCATCTTACCACTGC
TGCCTGTTCTTGCCCTTGTTTAGCCACCGCCCCCCGCATGCTGTTGACTG
TGGACCCATGAACTGGCGACGGATCTTGGGCTCCGAAGCCCTAGTCGCGT
TTATCCCCTCTTGAATCCACTCGTACAATTTTGTGTCCTATCGTACATAT
GATACATACAATATCGTATGTCCAACATGAAGTTCTCCGCGCCCACTCGT
GCCGAGTTTATTCGCGTAGATGCGCCGCCGATGGATTCGCAGCCGCTAAG
ACCACAGAGAGCGAAAAGTCCACCACGACATCGCTGCAAGACACAAGTAC
AGCTATCGTACGGACTAAAAATTAGGGTTGTGAATCGACTGGGTTTGTCG
CTGTTTTAAACATCGATGTATCGGCGCAGCCGATACATCGAGGCGAAGCC
GATATATCGAGCGCAGCGAGTGGGCGAGCACAGCGAGCGGACGAGCGAAT
GCGAGGGAGCCCGCTGTTCGAGCCCCCCCGGCTGGCGAGGGGGCCTCGCT
GGAGGTGCCCAGCCAGAAGCGAAAATTTAAGGGCCATTTGGCTTCATTTT
TCATTTCCCATCACAATCCGTGCGAAATCGAATGATTTTGAAGGGACGCG
TTTACCCTAGGATTGATCAACACCACACAAGCACTCGAAATAACAACAAA
AAAAGTGGTTACCATGCAAATAAAAAATAAAAATGAAGCTCGCAACGTGC
GGAGGTGGGAAAGCCTTCTCGGGTACCAGTACACCTTAACAAACAGTACA
GTGGCGCCATGAGAAGGTTGCCTTCGTCAGCAGGTACATACTCCGTACAT
ATTCTTAATTACTTCGTACTTGTATAAATTACTTCTGCCTACCATGAAGG
CTGCCGAACACGGCCATTTCGCAGGTTGGGTGGGGCGTGGGTCTGTGGTG
GACGTATTTCGAGCAGTACTCGTATGGGATTCCGGAACAAGTCCTGTTCT
TCGTAGCTAGACACGGGAACGAGGAGATGTTGGATTGGTTGAACTGCGCA
GCGAGTTGATATACTACGAGTGCAACTGTTGTCAAGGACCGGCGTGGTTT
ACGGCGAGATGCAGGGGTTGGTCAGGGTCCTCAGGGATGCTGCTGCCGCT
GGGCATGCGGATATGGTCATAACCTGTCTGGATTCGTGGTGGGAGTATTC
GGATGGCATAATGCAGGCCGCTGCAAGTGAGGGGCGATCGAACTTCATTG
ATGCGTTGGAGAAGAGGGCCCACTCGTGCCCTCAAAGTATGCGCGAAGCG
GCTGAGTTGCCGCTGACGGGGATGATAATGACGGTTCATCTATCATGGAA
ACGTTTGACACACCACGTTGTCCATGTGGGTGGGTTGGCTTCCAATATGT
GCAAGAGGGGGGAGGGGGGGGGGTTCGTCATAGACTAGAAGTTGCGTGTG
TTTTTTTGTCATTTGTAAAAAGCCAGGGTAATATCGTGGACACTACACAT
TCAACATTAAACATGTGGGGAGGCCTCTTCGTTTCATTTTACGCCCAATG
ATGATGAGAAGCAAAGCAGAATGTACTTTTCTTCTACTCCGGCGGTCCTC
CCTGCCAGACCCCCTCGCCAGCCGGGGGGGGGGTGGAGGTTGGGGAACTT
CCACAGCGACCTGCCACGCATTACCGTTCGATCGCTCACTGTGCTCCATT
GTTCTCGCCCTCTTGCTGCCCTCGCTTTCGGCTTCGCCGAATTTTTCGTC
AAAAATGTCGTTGTCGGTCGCCAAGCTAACCGCAAGTTGTGCGTATTCAG
TTATGTGTTCTCGCCACCCACGCGCCTAAACGTCCTAGGGCTCATTACCA
AACACGCATATGGTCTCATGCACTTGCGGGGAGCCCTGCGGCAGGTCTGG
AATGCAATATCCGCCTTCGTAGAGGCTCCAAACGCCTCTACCCAAATATC
GGCAAAACATCGACAAAACATCGACAAAACATTGACCCGATTCGTCGATA
TCGACTAGAAAACCTCTATCGCAATATAATTGGGTGAATCGATTTCGATT
CACAACCCTACTAAAAATTGGCTGTTCAGCACCGATTGCATCGAATCGAT
ATGATACGTACACACATGGGCAACACCTGGGCTGTAACAGCAGCGCTTGT
ACACATGGGACAAGCAACGAACTTATCTTACACTCGAGACAAAACCTTCC
TTCACTGTTGTACCAGAGTCCGAATCACAAGCGTGAAATCCCTCCACAAA
CACGTGAAAGTATTTTTTATTTGCCTCCAGCGCATCCCGCGGCCCGCTCG
CTGCGCCCGCCGGACGGAAGAAAATTCTGCGTACACCTACGTAATCAACG
GGCAACAAATGCACCATCATTCTCACCGCCCCAAAGGCCATGTGCTCTGT
CGAGTTGTTTCGCCCCTACACATTGGAAATTACTACTGAAGTATGCGTAT
GATATGAAATCAAAAACCTTTGTCACGGCAACTAACCCCGTTGACGTCCG
CCCCGCCAGGTCTTGCGTGAGCATGATGGCGGGCAAAATTGCCGTGTTTG
GCGGCAATGGTCTCACGGGGTCGGAGGTGGTTTACCAAGCGCTGGAGCGA
GGTGACAAGGTCACTGCCTTCTGCCGCGACCCTTCCAAGCTTATGGTGCG
GGCGTTCACTGCTGTCCCTCTATCGCTTGTCGTTCAATTTCTTCTGCATC
GCGCCACTTCTTCGTGGGACTTGTTGTTGTTGATGTTGTTGTTGTTGTTG
CTGTCTTTGCTATCGATGGTGTTGGCGTCTTGGCTATCGATGTTGTTGGC
GCTGGTGGTGTTTTCTCCGCGTGATTCACAACAGCGCTGCTGCTTGTCTA
CTTTGGTACGCGGCTATTGGTCGCCCATTTTCACTTTGAACGGTGCCCGA
GGTGACCATATTTCATGTGCTAAACCCCGAGGAGGTAGTATTGATACTTC
GTTCTTCGGACCTTTCAGGTATGAATTTTCCTTGACTTAGGAAGTGCGCG
TCTCTGCCTTTCGGCGACGCCCCTCCATATTTAAAACAAACCAACGAACT
CGAATACGAATCAATCAATATGGAAGGTGGGCTCAGTGCGCGGGCTGATT
TCAGTCTACGGGGTTGATCTTCCGCACCGGAAAAGGCCGAGATATATTCT
GATGGGTCATGCCAATCACTGCAGGTCTGCCAGCATTCCCGTTGACCTGC
TGTTGACGGTATATCTTATTGCGTTCAGGTACCCGTCGGGAGCGGAGGTG
CCAAAGCCGGAACACCACTTCGGAGCGAAAACCTCAAGACTGTCAAGGTG
AAACGACGAGATATCATACAGACAAACGTTTGGGCGGCCATTCTCTCACA
AGGGGTTCTCGCTCTGCTGTGGAACGTCAATCTCCGTTGCTTCGAGGAGT
AACATATCCGAAAATGTCATGTCGTTGGTTGTTTTGAGCAGGGTACGGTA
ACGGACCTGGACGATGTTCGCAAGGTTTTCGCGGATGGCGATGTCACTGG
GGTTGTCGTGGCGCTGGGTGGGAAGACCAAGGACGTCGGCAAGACAATGC
TCACGGACGGTGAGAGGGTGAGAGGCAGAGAGAACGACGGAGGGAGGCAG
AGAGGAGAGAAACGAGATATGAGAGAGCGATACACGCATGTTTTTCGCCT
TGTGCTGGTGGGTATCCCCGGCAACCCTCCCCCGTTCGAGAAAAAATACC
GGGCACACGAACTTTGCAACTACGACGAAAACATTTGGCGCAAAAAGTAA
CGGGCGGGGCTCTCAAACGTGACACACGAAGGCCGGTGCGCTTGCCTCGA
AAATGTACAAAGCGGGGCCCGTAGTCAACCTAGTGACTCCAGGGAAGCAA
CCGAAGATGGCACGTTTGCCCCCCCCCGCCTTTACCTCGCCCTCCCACAC
CATGCACGCGCGCTCAAGGTACGAGCAACGTCATCACGGCGATGAAGGAG
AAGGGGGTAAAGAGGGTGGCGGCCGTGACCAGCATCGGCGCGGGGGACAG
CGAGCAGCAGGCACCTTTTTTCTTTAAGGTGACAGTCGGGTTGTCAGGTG
TTGTCACATATACTGAACACGTTCACGCACACACAAGCTCGCATGCACGC
ACGCAGGCGCACACAGGCCGCCGCGCGCTTTTTTTCGATGCTGGCCAAGC
GCTCGTTTGTTTCACGCGGTGCAAGCCGTGCGTTTTGCTGTTGCTGTTGT
TGTTGTTGTTGTTGTTGTCGTTGTTGTAATCTTCGTTCTAACAATCTCTC
CGTTCCGTGCGACCTTCTCGTCGTGAGAAAATCCGCCGTCCAAACTTGCC
CCCCTTCCAGTCGCGATGGGTTTTACGGTTTCATCTGTATACCCCCAACC
GCTTTGCTGACTTCCGCGCGCCTTCGTCCGGGGTGGATACGTTGTTTCAG
CCTTCACCCGGGCTATTTGTGGAACGTTTAGGAATTTGAGCTCATTTTTC
GTGACAACACGCAATGTCAATACGATCGTCATCATATCGTCTGTCGCGAA
CGCCCTCGACCCGAGACTTCGACTTTGAATGTCCCGTGTCCGGCCGCCTT
TTGGTGTTGTTTTGGGCGAACAACCTGCACAGGTTTTGATGTACACGGCG
ATGAAGAGCATTTTTGAGGACAAGAACAGGCAGGAGGACCTGTTTTTCAA
AGGCCCTGGCAACGACCTCGAAGTGCGTTTTTGTTTGAGTTTCATAGACC
ATGTGCACGGCAGCTCTTGCATCACCACAAGTGCCGTAGACCTCGCGAAG
CGTCAAATTTGGAACAAATGCTGTATATGAAATGCCGCAATTTTAAAGCT
CGACCATGCTGCCATTAAAAAAAAATCTCCAGATGAGAGAAAAGCCGGCC
ACACACGGCAGCCTCGTTCATTGCTGCCTCTGTCTCGTATTATTGCCAGC
ACCCACGTTTTCCGTTTTTTTTTTTGCGCTTCCGCTTGTTTCACCTCGCT
CGTTGACGCCCTTGCCCCGTTCTGGCCTCGTTTTGGTTGTCGTTGTCGCG
ATAGTTCACGGTGGTGCGCCCGGGTGGCTTGACCGTGGAACCCCCCACGG
GGACGATCAACGTCATAAAGGGAGAGGTCAGTTTTCAGGCCCTTTATCAT
GGACAAACAGATCGGTTTCATGAAAAGTTGAAACTACCTGAGCTGCACCG
AGCAGGTTATCTTTTTTCCCGAATAACCTCCTGTTCTCGCCGCTATCGTG
CACGTTGGGGCGTGTTAGTTCCTTTTGTCTGGTGTAGTAACCACGTCCAC
GTGGTACGACAACAGGAACCGCGCGTCGCCCCGCCCCCAATTCGCCTTCT
AGATATGAGGTTTTCCCGGCCAAGACCCTCGCACAAACAAAGGAGTGCAC
GCCAGCTTTGCTCGTTTACTACCACTGTAGGGCGATGGGACGGTGACATC
TAGAGACGCCCCTGCCCCCACCCCCGACACGCATGACCACGAGAAACCTC
TCTCGAATCCCCTCCCCCATCATCGTTTTCGTTTTTTTTTATCCAAAGGC
GGGCTCAATCAGCCGCGCTGACGTGGCGGACTTCATCCTTGGAGCCGTCT
CGGAGAATGACTTCCCGTACCTCAAGCAAGCGCCGTGCATCAGCTCCGTG
GGTGGGACGAGCTGGGTCAAGGACCGCAGCGGGGCGGCTCGCGGCGAGAT
GGCTTGAAAAAGAGATCGATTTGACATCCAAAGATGAATCGAGACTCCAA
ATCGGCACTTCCTCTTCGTGACCACTTGGGAAACAATGCGTTTTGTGTGG
CCCGCCACAGGGCACTCATTCTTGGGCCCACCTGACTGGATCCCACCCTG
TTCCTGACTGTACATTTTAGAGTACTCCAAGGTGGTGTCGTATCTTTCCT
TAGAGTTCCTGGCAAGGCCAGTCCTGATAACATTTAACTTGGCTTGACGT
GCATGATTGTTAACGTTCGACTCACTCCCGAGTCGAATAACTCCCCCCCC
CCCACCCCCACCCCCCCCACCCACTCACCCACCCACGCTGATGAGACCGT
TTTGGCGAGATATTTCATGACCTTACCCTGTCGCGAGCTCGGAAAATGTT
TCGCTTTGAGTAACTGCGTGAGATGATTGCTTGCGATAGGTAACGTTGTG
CCCTGGGTGAGTGACGAGCGCGGCCGTTGTCTTCGGTTCGTGTTGAGGGG
ATATCGGACCGATCATGTGTGTGAGGGAAGCCCGCAGTGTCTCGACGCGA
CGATCTATCCCCTTCAGGGCGAGTTGCCGAGGGTCACGGTCCCAACCAGG
GGGGGGGGGGGTGCGGGTTGGTTGGACGTGCGATAGAGAATAGATGGCGG
GCGGATGTAACGTGTGGCATGTGCGGAGGTGGGGTGGAAGAAGATTTTAC
ACTGGTTTCGCTGTGGTTGTACCCGACCAGCCGGCCGTCCCTGTTTTGCG
ATATACTGACTGTGTACACTAGAAGCTATCAGAGAGACACCACCAAGTGC
GGGATGTGGTTGCAGATTGCAGAGACCAAAAATATAGTATCAAAGCCGTG
GTGTACGGTGTCATTTTTTTGCTACCTTGCGCCTTCTGTGCTCTATTACA
GTTCGTTTCATTCGAAAAGGGTGTTAGTGCGCTGTGCAGTACAATCCCGG
GCCCTGTTCGATTTGTTCGTGTTTGCGTCCGACGATATGGAGAAAAATAC
GAACAATGGAAGGAAGAGTCCGCGTCGTACTGGTGAGGTTCTGGAAACGT
GTATTCGTCAGTCAGGTTTGTTTAGGATTTTTGATTTGATCTTGAAGTTT
TGTCATAAGGTTTGGGTGCGTTTATCAAACCTCTACTATTAATACGTGTA
GGGTTTTCTTAGACCTGCCAGGCAAGAGTTGGAACTCCAAAGCAATGATT
CTGTCTACAGTATAGAAGCGTATTTCTTGTTTCTGCGCGTGTTGTGGTCG
GTCGGGTACGCCCGTGTGTTGAAACAACGGGTGGGCCTTGATGTGTGTGT
TGTCATCCCATTTTCTCTGGCACACTAGTCTGCACCTCGCGGTTCAAACT
ACAGGCGAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCGACACAGGA
GGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCG
CGAGCAGGGATCCGCGGTCCCTACCCTGGTCGGCGAAGCCGAATCTGCTT
TTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACACATTCTCCGG
GAATCGAACCCCCGTTCCTCTGCATCTAGTGGGTAACGAGGGGACCACTA
GTCCACCGGGCCTTGATCGAAAAGCCCTCGACCGTGGTCCTGCTTGCTGG
T
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:49032..56782-

>mRNA_P-littoralis_Contig117.19.3 ID=mRNA_P-littoralis_Contig117.19.3|Name=mRNA_P-littoralis_Contig117.19.3|organism=Pylaiella littoralis U1_48|type=CDS|length=855bp|location=Sequence derived from alignment at P-littoralis_Contig117:49032..56782- (Pylaiella littoralis U1_48)
ATGGTGACTCGCGGACTAGTTTCACTGCTGTGCCTGGGATCGGCCACGGG
CTTCATGTCTCCCTTTATTGGGAGGATGCACTCAGCGCGAAACACCGGGT
CTTGCGTGAGCATGATGGCGGGCAAAATTGCCGTGTTTGGCGGCAATGGT
CTCACGGGGTCGGAGGTGGTTTACCAAGCGCTGGAGCGAGGTGACAAGGT
CACTGCCTTCTGCCGCGACCCTTCCAAGCTTATGGTACCCGTCGGGAGCG
GAGGTGCCAAAGCCGGAACACCACTTCGGAGCGAAAACCTCAAGACTGTC
AAGCAGGGTACGGTAACGGACCTGGACGATGTTCGCAAGGTTTTCGCGGA
TGGCGATGTCACTGGGGTTGTCGTGGCGCTGGGTGGGAAGACCAAGGACG
TCGGCAAGACAATGCTCACGGACGGTACGAGCAACGTCATCACGGCGATG
AAGGAGAAGGGGGTAAAGAGGGTGGCGGCCGTGACCAGCATCGGCGCGGG
GGACAGCGAGCAGCAGGCACCTTTTTTCTTTAAGGTTTTGATGTACACGG
CGATGAAGAGCATTTTTGAGGACAAGAACAGGCAGGAGGACCTGTTTTTC
AAAGGCCCTGGCAACGACCTCGAATTCACGGTGGTGCGCCCGGGTGGCTT
GACCGTGGAACCCCCCACGGGGACGATCAACGTCATAAAGGGAGAGGCGG
GCTCAATCAGCCGCGCTGACGTGGCGGACTTCATCCTTGGAGCCGTCTCG
GAGAATGACTTCCCGTACCTCAAGCAAGCGCCGTGCATCAGCTCCGTGGG
TGGGACGAGCTGGGTCAAGGACCGCAGCGGGGCGGCTCGCGGCGAGATGG
CTTGA
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