mRNA_P-littoralis_Contig664.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig664.8.1
Unique NamemRNA_P-littoralis_Contig664.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Match: A0A6H5JU85_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU85_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.680e-13
Identity = 35/47 (74.47%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHLVCALAPSQARLAAKEGGPIVN 154
            I TGPSP ALHRTPIR LE LL SH  CALA SQA L AKEGG I+N
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIIN 51
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BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Match: A0A6H5K8U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.100e-13
Identity = 35/47 (74.47%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHLVCALAPSQARLAAKEGGPIVN 154
            I TGPSP ALHRTPIR LE LL SH  CALA SQA L AKEGG I+N
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIIN 51
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BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-11
Identity = 35/47 (74.47%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHLVCALAPSQARLAAKEGGPIVN 154
            I TGPSP ALHRTPIR LE LL SH  CALA SQA L AKEGG I+N
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIIN 51
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BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.810e-11
Identity = 34/47 (72.34%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHLVCALAPSQARLAAKEGGPIVN 154
            I TGPSP ALHRTPIR  E LL SH  CALA SQA L  KEGGPI+N
Sbjct:    5 IRTGPSPQALHRTPIRLPERLLDSHSACALAASQAGLVVKEGGPIIN 51
[Close]
BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-6
Identity = 28/39 (71.79%), Postives = 29/39 (74.36%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHLVCALAPSQARLAA 130
            I TGPSP ALHRTPIR LE LL SH  CALA SQA L +
Sbjct:   37 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAWLGS 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig664.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JU85_9PHAE1.680e-1374.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8U0_9PHAE2.100e-1374.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE2.050e-1174.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.810e-1172.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF8_9PHAE1.450e-671.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig664contigP-littoralis_Contig664:14786..15745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.4534695-CDS-P-littoralis_Contig664:14785..149211680791384.4534695-CDS-P-littoralis_Contig664:14785..14921Pylaiella littoralis U1_48CDSP-littoralis_Contig664 14786..14921 -
1680791384.4730852-CDS-P-littoralis_Contig664:15590..157451680791384.4730852-CDS-P-littoralis_Contig664:15590..15745Pylaiella littoralis U1_48CDSP-littoralis_Contig664 15591..15745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig664.8.1prot_P-littoralis_Contig664.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig664 14786..15745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig664.8.1

>prot_P-littoralis_Contig664.8.1 ID=prot_P-littoralis_Contig664.8.1|Name=mRNA_P-littoralis_Contig664.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MVQDHRDRALSTRPSPYTHPIARASTGLAPGVRSSTITGPAGGEGRRPNR
QRTLCTSPLPYTHPIARASTGLALGVRSSTITGPAGGEGRRPNRQR*
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mRNA from alignment at P-littoralis_Contig664:14786..15745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig664.8.1 ID=mRNA_P-littoralis_Contig664.8.1|Name=mRNA_P-littoralis_Contig664.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=960bp|location=Sequence derived from alignment at P-littoralis_Contig664:14786..15745- (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACCTGGTGTGCGCT
CTAGCACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGTGAGTCGAGAAAAAGGAAAACATGACCAAACATGACCATAGGAG
ATCCGGGGGGTCGGACAAAACTGGCGAACATGCTCGCCACGCAGCCCTCA
CGCTCGTCTCTGAGCGCACGGGTTGCTGCGCAACAAGGTTAGGAGCATAG
AGTGTGTAAATCTGGCTTTCTCGGACAGAAATCCGATTGTCAAACGGTGT
AGTGTACGCAGAGCAATGTCCAAACTTCGGACCCATAACCGTCACAGTGC
CGTATCTCTCCGCTTGGGCACACTAAAATGGACTGGTTTGTCAAGGAGTT
TGTTTGCACAATCAGAACGCTGTCCTCCTGCTGCAACAGCTGAACCCCGC
AGCATAACCTCCCCAACATGTTGCACAGCACCACCTCAGTAGAAGCTGGG
GGAGTGCTGCACACCCTGTCATGTAGCATAGCCGCGTCAGACGCCTTTTT
TGTCACTTGTGTCTCAATATTGTCACGGACCCAACCCCGTGTACGACTCA
AGGTAACACACCCCCTAGACCGACAATCAAAGCACGATTATCGACAACTA
TGGTACATGACTATTAAAAGAACAACTTGGACGGTAACTGTACGAGATCT
CCGAAAGTGCGCTCGATTGAGGGTTCTCATTCTAAGAAGGCGTGCACGGC
ACATGCGGGGACACATGAGGACAGGACCCTCTGCACCAGCCCTTTACCGT
ACACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGC
TCTAGCACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCG
TCAACGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig664:14786..15745-

>mRNA_P-littoralis_Contig664.8.1 ID=mRNA_P-littoralis_Contig664.8.1|Name=mRNA_P-littoralis_Contig664.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig664:14786..15745- (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACCTGGTGTGCGCT
CTAGCACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGACCCTCTGCACCAGCCCTTTACCGTACACCCATCCGATAGCTCG
AGCATCTACTGGTCTCGCACTCGGTGTGCGCTCTAGCACCATCACAGGCC
CGGCTGGCGGCGAAGGAAGGAGGCCCAATCGTCAACGGTGA
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