mRNA_P-littoralis_Contig664.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig664.3.1
Unique NamemRNA_P-littoralis_Contig664.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig664.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig664contigP-littoralis_Contig664:9884..10252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size217
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.3808744-UTR-P-littoralis_Contig664:9883..99241680791384.3808744-UTR-P-littoralis_Contig664:9883..9924Pylaiella littoralis U1_48UTRP-littoralis_Contig664 9884..9924 +
1680791384.4131007-UTR-P-littoralis_Contig664:10214..102521680791384.4131007-UTR-P-littoralis_Contig664:10214..10252Pylaiella littoralis U1_48UTRP-littoralis_Contig664 10215..10252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.3914065-CDS-P-littoralis_Contig664:9924..99541680791384.3914065-CDS-P-littoralis_Contig664:9924..9954Pylaiella littoralis U1_48CDSP-littoralis_Contig664 9925..9954 +
1680791384.4018447-CDS-P-littoralis_Contig664:10106..102141680791384.4018447-CDS-P-littoralis_Contig664:10106..10214Pylaiella littoralis U1_48CDSP-littoralis_Contig664 10107..10214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig664.3.1prot_P-littoralis_Contig664.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig664 9925..10214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig664.3.1

>prot_P-littoralis_Contig664.3.1 ID=prot_P-littoralis_Contig664.3.1|Name=mRNA_P-littoralis_Contig664.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
MEVILQRQSKICSKIRDNIEEPIIRSRIHHYRKSGLGAHAFNCSI*
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mRNA from alignment at P-littoralis_Contig664:9884..10252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig664.3.1 ID=mRNA_P-littoralis_Contig664.3.1|Name=mRNA_P-littoralis_Contig664.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig664:9884..10252+ (Pylaiella littoralis U1_48)
GGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTG
ATTCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAACACACT
ACGGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACAT
GCTAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATC
GCGGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATAATATT
GAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCT
TGGAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCGGATGA
ATTGGACGATGACAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig664:9884..10252+

>mRNA_P-littoralis_Contig664.3.1 ID=mRNA_P-littoralis_Contig664.3.1|Name=mRNA_P-littoralis_Contig664.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig664:9884..10252+ (Pylaiella littoralis U1_48)
ATGGAGGTGATTCTCCAACGCCAATCCAAGATTTGTTCAAAGATTCGTGA
TAATATTGAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAAT
CAGGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGA
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