mRNA_P-littoralis_Contig663.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig663.20.1
Unique NamemRNA_P-littoralis_Contig663.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.490e-37
Identity = 90/187 (48.13%), Postives = 117/187 (62.57%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKKAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V  LK+  +  KKK  R +     LK      +D    GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESLR+GDKKFPIFV+
Sbjct:  108 RLQRKVDYLTPIVAGLKRQVSNEKKKTKRAKLNLGNLK------ADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 288          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.210e-36
Identity = 90/187 (48.13%), Postives = 117/187 (62.57%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKKAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V  LK+  +  KKK  R +     LK      +D    GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESLR+GDKKFPIFV+
Sbjct:  211 RLQRKVDYLTPIVAGLKRQVSNEKKKTKRAKLNLGNLK------ADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 391          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.050e-32
Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  187 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +  + +  +TGV++K+DLNITC RNTVK+ A GI  LDG++L +A+L+APFLL+AGDESLR+GDKKFP+FV+
Sbjct:  119 KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQSTVFHATGVKLKQDLNITCARNTVKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVA 245          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.280e-30
Identity = 82/189 (43.39%), Postives = 120/189 (63.49%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKKAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIY--SAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V+ LK+  ++ KKK    +RA A ++       + + + AAP G E  + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +   ++ +  +TGV++K+DLNITC RNTVK+ A+GI  LDG++L  A+L+APFLL+A DESLR+ DKKFP+FV+
Sbjct:  116 RLQRKVDYLGPLVEGLKRQVSSEKKKT---KRAKARVENLKANEPEEEPEQAAP-GEE--KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQPTSTVFHATGVQLKQDLNITCARNTVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVA 298          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5L160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L160_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.260e-29
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  253 KSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            K++LKP G  GE +A+ FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+  +GI  LD  +L  AILKAPFLL+AGDESL +GDKKFPIFV+
Sbjct:  216 KNRLKPGGKIGETAAKLFQSFVQGGVSLNMTQQLLQSTLFHTTGVRLKQDLNITCARNTVKVLGLGITQLDEKELVKAILKAPFLLIAGDESLLNGDKKFPIFVA 320          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.550e-27
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  187 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            + EGG      ED  + L   +K +LKP G  GE +AR  +  ++ G SL +   +  + +  +TGV++K+ LNITC RNTVK+ A+GI  LDG++L  A+++APFLL+ GDESLR+ DKKFP+FV+
Sbjct:   51 KGEGGGELLSAEDEKKVLMRVIKKRLKPGGKNGETAARLSKSFVEGGVSLNTTPQLLQSTVFHATGVKLKQYLNITCPRNTVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVA 177          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.170e-23
Identity = 76/183 (41.53%), Postives = 104/183 (56.83%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKKAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFP 555
            RL+R+V  L P VD LK+  +  KKK    +RA   L+++     +G   GA  E  E  + +GG      ED  + L+  +K++LKP G                G SL     +    +  +TGVR+K+DLNITC RNTVK+  +GI  LDG++L  AIL+APFLL+A DESLR+GDKKFP
Sbjct:  185 RLQRKVDYLAPIVDGLKRQVSYEKKKT---KRAKLNLEDRKAHEPEG---GAEQEEPEQEKGKGGGELLSAEDEKKVLERVIKNRLKPGG----------------GVSLSMTPQLLQFIMFHTTGVRLKQDLNITCARNTVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFP 345          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-12
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  280 FGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            +G   AR  Q+ L+ G     VG +  + +  +TGV +      +  H  TVK  A+GI  LD  +L   ILKAP+LL+AGDESLR GDKKFPIFV+
Sbjct:  306 YGLNLARLCQEYLEAGTPRCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 402          
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.530e-12
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  277 SFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            S+G   A   Q+ L+ G  L  VG +  + +  +TGV +      +  H  TVK  A+GI  L+  +L   ILKAP+LL+AGDESLR GDKKFPIFV+
Sbjct:  165 SYGLNLAGLCQEYLEAGTPLCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig663.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FJJ7_ECTSI2.490e-3748.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI1.210e-3648.13Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JND1_9PHAE1.050e-3250.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK4_9PHAE1.280e-3043.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L160_9PHAE6.260e-2956.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE3.550e-2745.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL8_9PHAE1.170e-2341.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNC8_9PHAE1.970e-1245.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P4_9PHAE2.530e-1244.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig663contigP-littoralis_Contig663:42975..44198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size569
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791384.0435884-CDS-P-littoralis_Contig663:42974..430581680791384.0435884-CDS-P-littoralis_Contig663:42974..43058Pylaiella littoralis U1_48CDSP-littoralis_Contig663 42975..43058 +
1680791384.054037-CDS-P-littoralis_Contig663:43715..441981680791384.054037-CDS-P-littoralis_Contig663:43715..44198Pylaiella littoralis U1_48CDSP-littoralis_Contig663 43716..44198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig663.20.1prot_P-littoralis_Contig663.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig663 42975..44198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig663.20.1

>prot_P-littoralis_Contig663.20.1 ID=prot_P-littoralis_Contig663.20.1|Name=mRNA_P-littoralis_Contig663.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
VTRLERRVAVLQPQVDKLKKANTTAKKKAARHQRAAALLKEKVKGSSDGD
GDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSAR
FFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVG
INTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS
back to top

mRNA from alignment at P-littoralis_Contig663:42975..44198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig663.20.1 ID=mRNA_P-littoralis_Contig663.20.1|Name=mRNA_P-littoralis_Contig663.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1224bp|location=Sequence derived from alignment at P-littoralis_Contig663:42975..44198+ (Pylaiella littoralis U1_48)
GTGACGCGGCTGGAGAGGAGGGTGGCTGTTCTTCAGCCGCAAGTGGACAA GCTGAAGAAGGCTAACACTACAGCGAAGAAAAAGGTGTGCTGCGTGTCGT GCGTTGTGTGGTTCGGTTGTGCTTTTTTTTCCAGTTTTAGTTTCGCTTTT TTTCAGTTCTTTCTATTGCCGTTATCTATGTATGTATGTATGTATGTACG TATGTATCTATCTATCTATCTATCTATCTATCTATCTATATGTAGTGTGT ATTCATATATGTAGTCATATATATTTTTGGTTGACTCCTACTGCTGTATA CCAAGTATCATATATACATATTTAATATGTTATGTATGTACATACATGTT TTGTTGAGACTCCTGCTGCTGCTGCTGCTGCTTACTGCTGCTTCTGTTGC TCTCGACTGCTGCGGCCCCCTCTGCTGTTTTACTGATTCCTTCTTGGTTT TCTCTCGCGTATCTCATGTGGTTCGTGTGTAGCTGCTGCTGGTCCTGCTC TTGACTGCTGTACTCTTCGCCTCTCTCAAATCCGACTGACGGTACTGAAC ATATTATTTGTGTCAGTCAGTTGGTTCGATCAGAAGCGACGCGGCTGTGC TGCTGCTGCTGCTGTACGAGTATTTGTTTCGGTGTGTCAGTCTTGAGAAA TACCAGGTATAATGTTTTTTTTTTTTTTTTGCTGTGGATGACGAATTACT CTCTCCCACCCCCTCCCCTGCTGTCTTTTCGAATTACGTAGGCTGCACGA CACCAACGAGCCGCTGCGTTGTTGAAAGAGAAGGTGAAAGGCAGCAGCGA TGGAGATGGAGATGGTGCGGCACCTGAGGGGATGGAAGGTTCGAGGTCAG AAGGGGGCAGTGCAGCCGAAGTTGGGGAGGATTTTTTCGAGCAGTTGAAA GCCCATGTCAAGAGCAAACTCAAACCAGACGGTAGTTTTGGTGAGGGTTC AGCACGCTTTTTTCAGAAGTGTTTGCAGCATGGCAACTCCCTCAAGTCAG TGGGTCCCATCTACTCAGCTGCAATTGAGTTCTCGACCGGGGTGCGGATG AAGGAGGATCTCAACATCACATGCCATCGCAACACGGTCAAGCTCTACGC TGTGGGCATCAACACGCTGGATGGAGACAAGCTTCGCGATGCGATTCTCA AGGCACCTTTCCTGCTTGTAGCGGGAGACGAATCCCTTCGTCATGGAGAT AAAAAATTCCCGATTTTCGTGTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig663:42975..44198+

>mRNA_P-littoralis_Contig663.20.1 ID=mRNA_P-littoralis_Contig663.20.1|Name=mRNA_P-littoralis_Contig663.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig663:42975..44198+ (Pylaiella littoralis U1_48)
GTGACGCGGCTGGAGAGGAGGGTGGCTGTTCTTCAGCCGCAAGTGGACAA
GCTGAAGAAGGCTAACACTACAGCGAAGAAAAAGGCTGCACGACACCAAC
GAGCCGCTGCGTTGTTGAAAGAGAAGGTGAAAGGCAGCAGCGATGGAGAT
GGAGATGGTGCGGCACCTGAGGGGATGGAAGGTTCGAGGTCAGAAGGGGG
CAGTGCAGCCGAAGTTGGGGAGGATTTTTTCGAGCAGTTGAAAGCCCATG
TCAAGAGCAAACTCAAACCAGACGGTAGTTTTGGTGAGGGTTCAGCACGC
TTTTTTCAGAAGTGTTTGCAGCATGGCAACTCCCTCAAGTCAGTGGGTCC
CATCTACTCAGCTGCAATTGAGTTCTCGACCGGGGTGCGGATGAAGGAGG
ATCTCAACATCACATGCCATCGCAACACGGTCAAGCTCTACGCTGTGGGC
ATCAACACGCTGGATGGAGACAAGCTTCGCGATGCGATTCTCAAGGCACC
TTTCCTGCTTGTAGCGGGAGACGAATCCCTTCGTCATGGAGATAAAAAAT
TCCCGATTTTCGTGTCG
back to top