mRNA_P-littoralis_Contig661.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig661.66.1
Unique NamemRNA_P-littoralis_Contig661.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig661.66.1 vs. uniprot
Match: A0A6H5L8B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.190e-15
Identity = 34/72 (47.22%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   25 VRKWVDRELDLIAASTPIGRSAATCVQDCRKHPALLYPYIHNMHQVGSIVANLNEAVEKEQLKVRKLEEEVA 240
            + +WV++EL+ I+  TPIGRS AT ++D R +P L+YPYIH+M Q+GS+V NL+  +E  + +VR+L+ ++A
Sbjct:   34 ISRWVEQELNNISEITPIGRSTATFIEDNRTNPVLVYPYIHSMAQIGSLVGNLHADIETARAEVRRLKRDLA 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig661.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8B8_9PHAE1.190e-1547.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig661contigP-littoralis_Contig661:132400..132652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791382.6754675-CDS-P-littoralis_Contig661:132399..1326511680791382.6754675-CDS-P-littoralis_Contig661:132399..132651Pylaiella littoralis U1_48CDSP-littoralis_Contig661 132400..132651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig661.66.1prot_P-littoralis_Contig661.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig661 132400..132651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig661.66.1

>prot_P-littoralis_Contig661.66.1 ID=prot_P-littoralis_Contig661.66.1|Name=mRNA_P-littoralis_Contig661.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
GTATPAEKVRKWVDRELDLIAASTPIGRSAATCVQDCRKHPALLYPYIHN
MHQVGSIVANLNEAVEKEQLKVRKLEEEVALLKT
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mRNA from alignment at P-littoralis_Contig661:132400..132652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig661.66.1 ID=mRNA_P-littoralis_Contig661.66.1|Name=mRNA_P-littoralis_Contig661.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=253bp|location=Sequence derived from alignment at P-littoralis_Contig661:132400..132652+ (Pylaiella littoralis U1_48)
GGGACCGCGACTCCAGCGGAAAAAGTCCGGAAATGGGTTGACAGGGAGTT
GGATTTAATCGCAGCCAGCACTCCTATCGGCAGAAGTGCCGCTACTTGCG
TCCAGGATTGCCGAAAACATCCGGCGTTGCTTTACCCGTACATTCACAAC
ATGCATCAAGTGGGGTCGATCGTTGCAAACTTGAACGAGGCGGTGGAGAA
GGAACAACTGAAAGTGCGCAAGTTGGAGGAGGAGGTAGCCCTCTTGAAAA
CGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig661:132400..132652+

>mRNA_P-littoralis_Contig661.66.1 ID=mRNA_P-littoralis_Contig661.66.1|Name=mRNA_P-littoralis_Contig661.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig661:132400..132652+ (Pylaiella littoralis U1_48)
GGGACCGCGACTCCAGCGGAAAAAGTCCGGAAATGGGTTGACAGGGAGTT
GGATTTAATCGCAGCCAGCACTCCTATCGGCAGAAGTGCCGCTACTTGCG
TCCAGGATTGCCGAAAACATCCGGCGTTGCTTTACCCGTACATTCACAAC
ATGCATCAAGTGGGGTCGATCGTTGCAAACTTGAACGAGGCGGTGGAGAA
GGAACAACTGAAAGTGCGCAAGTTGGAGGAGGAGGTAGCCCTCTTGAAAA
CG
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