mRNA_P-littoralis_Contig660.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig660.40.1
Unique NamemRNA_P-littoralis_Contig660.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig660.40.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-16
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query: 1072 EVVEVLANLDIAPGTHAHPGAIKVMEEWVGLEEQPEFADSLCEDAKEVFMEKVNNTYEE 1248
            E+VEVLANL+IAPG  AHP AIK +E W GLEEQPEFA++L EDAKE+FMEKVNNT++E
Sbjct:  556 ELVEVLANLNIAPGAPAHPTAIKAVEAWAGLEEQPEFAETLSEDAKEIFMEKVNNTFKE 614
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BLAST of mRNA_P-littoralis_Contig660.40.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.900e-16
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 1 
Query: 1072 EVVEVLANLDIAPGTHAHPGAIKVMEEWVGLEEQPEFADSLCEDAKEVFMEKVNNTYEE 1248
            E+VEVLANLD+APG  AHP AIK +E W GLEEQPEFA++  ED+KE+FMEKVNNT++E
Sbjct:  500 ELVEVLANLDVAPGAPAHPKAIKAVEAWAGLEEQPEFAETRSEDSKEIFMEKVNNTFKE 558
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BLAST of mRNA_P-littoralis_Contig660.40.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.570e-5
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 
Query: 1153 WVGLEEQPEFADSLCEDAKEVFMEKVNNTYEE 1248
            W GLEEQPEFA++L EDAKE+FMEKVNNT++E
Sbjct:  208 WAGLEEQPEFAETLSEDAKEIFMEKVNNTFKE 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig660.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNH6_9PHAE1.240e-1674.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE4.900e-1671.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Y6_9PHAE2.570e-578.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig660contigP-littoralis_Contig660:113126..114505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1291
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.349342-UTR-P-littoralis_Contig660:113125..1133161680791381.349342-UTR-P-littoralis_Contig660:113125..113316Pylaiella littoralis U1_48UTRP-littoralis_Contig660 113126..113316 +
1680791381.3628235-UTR-P-littoralis_Contig660:113406..1141691680791381.3628235-UTR-P-littoralis_Contig660:113406..114169Pylaiella littoralis U1_48UTRP-littoralis_Contig660 113407..114169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.3759794-CDS-P-littoralis_Contig660:114169..1145051680791381.3759794-CDS-P-littoralis_Contig660:114169..114505Pylaiella littoralis U1_48CDSP-littoralis_Contig660 114170..114505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig660.40.1prot_P-littoralis_Contig660.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig660 114170..114505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig660.40.1

>prot_P-littoralis_Contig660.40.1 ID=prot_P-littoralis_Contig660.40.1|Name=mRNA_P-littoralis_Contig660.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MQACGDLELCKLPNKPLGGNHGGHTCRFGCGALLHGICGEVVEVLANLDI
APGTHAHPGAIKVMEEWVGLEEQPEFADSLCEDAKEVFMEKVNNTYEEEA
DSDDEPDNAEDS
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mRNA from alignment at P-littoralis_Contig660:113126..114505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig660.40.1 ID=mRNA_P-littoralis_Contig660.40.1|Name=mRNA_P-littoralis_Contig660.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1380bp|location=Sequence derived from alignment at P-littoralis_Contig660:113126..114505+ (Pylaiella littoralis U1_48)
CGTAGGAGCAAGGAAAGCTCGAGCTTGTAACGACGGTGGCTCTGGCGCAG
GTGGTTATGCCAAAGTAGATCGCACGGTAATCGAATGTGTGAGAGGGTTG
GATGTGGATATCGACATCATCGAGGAGAGCCGAGCATCGGCTGACTTCCG
GTTTCGGAAGGCGGACATGCATCGCCTTTTGGCTGCCTAACCCAAGATAT
GCGCAAAGTGCGGCGGGAGGCCATTTTAATTTTATTTTTCTCACAAAGTT
GGCGTGCCCACTCCCTGCTGGAATCCCGTGGCATGTTTGTTCGGTCTCCC
AGCGGTTTCAACCATCGGCCAATCAATGCCGTTCACCCATTAATTGTCTG
AAAATTCAAACCCGCACTATCGCACGACGGACAGCCTTCATATTCGAAGT
TGTTTCCGGCGAAATTCCCGAAGGCAAAGTTCCCAGAAAAATTCCTTATC
GCAAACACGTCACTTCTGTGTTTGGTGGTTAACAAAGACACACCTATATT
TACCATACTCGTACATACGAAATATACAAAAATTCAACAAAATCAATCAA
ATTATAATAACTAATGTGTTCGTCAAAATAAAAAGACGAGGATGTAGAGG
AGCAATTAGCGACGAACAAAAAAAGCACTTCGGAGTATTATACACTTCGT
ACCCTTCTAGGATACCTACCTATATTTGTATTGTTTCTGCAAACACTCAC
TCATCACGCACTCATCAGTGCGTGCTTGGCTTCTACTCTCTGTATGCATG
AACCTTTCAGCCGCAGTAAAACAATCTTGAGGGAAAAGGCTAATACAGTA
GGTACAGTAGCCCGATATAGTGGTAACCTGAATAGTGACCTGCCCGATAT
AGTGGCATGAAAATCTCTTGGCAAAATCTCAACCCGGTATAGTGCTACTT
TCCCACTATTGAGGACGGGGCCCTCAATAGTGGCATTTCGGGCCTTCCAC
ACACCCAATAGTGGCAGTTCCAAGTAGCGAGCCCCCACCACTGCTGTACC
ACACCTGCCCACACACTTTTGTAGCAGTGGGCGCCACACGTATCATGCAA
GCCTGCGGGGACCTAGAACTGTGTAAACTCCCAAACAAACCACTGGGAGG
GAACCACGGCGGGCACACATGTCGCTTTGGCTGCGGTGCGCTGCTTCATG
GAATATGTGGTGAGGTGGTAGAGGTTCTGGCGAACCTTGACATCGCCCCT
GGCACGCATGCTCACCCCGGCGCCATCAAAGTCATGGAGGAATGGGTCGG
GTTGGAGGAGCAACCCGAGTTTGCTGACTCTCTGTGTGAAGACGCAAAGG
AGGTTTTCATGGAGAAGGTTAACAACACGTACGAGGAGGAGGCGGACAGT
GACGACGAGCCAGACAACGCCGAAGACTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig660:113126..114505+

>mRNA_P-littoralis_Contig660.40.1 ID=mRNA_P-littoralis_Contig660.40.1|Name=mRNA_P-littoralis_Contig660.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig660:113126..114505+ (Pylaiella littoralis U1_48)
ATGCAAGCCTGCGGGGACCTAGAACTGTGTAAACTCCCAAACAAACCACT
GGGAGGGAACCACGGCGGGCACACATGTCGCTTTGGCTGCGGTGCGCTGC
TTCATGGAATATGTGGTGAGGTGGTAGAGGTTCTGGCGAACCTTGACATC
GCCCCTGGCACGCATGCTCACCCCGGCGCCATCAAAGTCATGGAGGAATG
GGTCGGGTTGGAGGAGCAACCCGAGTTTGCTGACTCTCTGTGTGAAGACG
CAAAGGAGGTTTTCATGGAGAAGGTTAACAACACGTACGAGGAGGAGGCG
GACAGTGACGACGAGCCAGACAACGCCGAAGACTCT
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