mRNA_P-littoralis_Contig660.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig660.34.1
Unique NamemRNA_P-littoralis_Contig660.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 7.590e-35
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 2 
Query:  158 GAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESL +GDKKFPIFV+
Sbjct:  152 GAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 288
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.260e-34
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 2 
Query:  158 GAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESL +GDKKFPIFV+
Sbjct:  255 GAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 391
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.420e-32
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 2 
Query:  188 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +  + +  +TGV++K+DLNITC RNTVK+ A GI  LDG++L +A+L+APFLL+AGDESL +GDKKFP+FV+
Sbjct:  119 KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQSTVFHATGVKLKQDLNITCARNTVKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVA 245
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5L160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L160_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.760e-29
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  254 KSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            K++LKP G  GE +A+ FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+  +GI  LD  +L  AILKAPFLL+AGDESL +GDKKFPIFV+
Sbjct:  216 KNRLKPGGKIGETAAKLFQSFVQGGVSLNMTQQLLQSTLFHTTGVRLKQDLNITCARNTVKVLGLGITQLDEKELVKAILKAPFLLIAGDESLLNGDKKFPIFVA 320
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.240e-28
Identity = 61/129 (47.29%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:  188 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIY--SAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +   ++ +  +TGV++K+DLNITC RNTVK+ A+GI  LDG++L  A+L+APFLL+A DESL + DKKFP+FV+
Sbjct:  170 KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQPTSTVFHATGVQLKQDLNITCARNTVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVA 298
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.820e-26
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 2 
Query:  188 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            + EGG      ED  + L   +K +LKP G  GE +AR  +  ++ G SL +   +  + +  +TGV++K+ LNITC RNTVK+ A+GI  LDG++L  A+++APFLL+ GDESL + DKKFP+FV+
Sbjct:   51 KGEGGGELLSAEDEKKVLMRVIKKRLKPGGKNGETAARLSKSFVEGGVSLNTTPQLLQSTVFHATGVKLKQYLNITCPRNTVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVA 177
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.060e-20
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 2 
Query:  158 GAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFP 556
            GA  E  E  + +GG      ED  + L+  +K++LKP G                G SL     +    +  +TGVR+K+DLNITC RNTVK+  +GI  LDG++L  AIL+APFLL+A DESL +GDKKFP
Sbjct:  229 GAEQEEPEQEKGKGGGELLSAEDEKKVLERVIKNRLKPGG----------------GVSLSMTPQLLQFIMFHTTGVRLKQDLNITCARNTVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFP 345
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.100e-12
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 2 
Query:  281 FGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            +G   AR  Q+ L+ G     VG +  + +  +TGV +      +  H  TVK  A+GI  LD  +L   ILKAP+LL+AGDESL  GDKKFPIFV+
Sbjct:  306 YGLNLARLCQEYLEAGTPRCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 402
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BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.210e-11
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:  278 SFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLHHGDKKFPIFVS 568
            S+G   A   Q+ L+ G  L  VG +  + +  +TGV +      +  H  TVK  A+GI  L+  +L   ILKAP+LL+AGDESL  GDKKFPIFV+
Sbjct:  165 SYGLNLAGLCQEYLEAGTPLCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig660.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FJJ7_ECTSI7.590e-3553.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI3.260e-3453.28Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JND1_9PHAE5.420e-3249.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L160_9PHAE8.760e-2956.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK4_9PHAE6.240e-2847.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE1.820e-2644.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL8_9PHAE3.060e-2043.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNC8_9PHAE9.100e-1244.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P4_9PHAE1.210e-1143.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig660contigP-littoralis_Contig660:99816..101032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size568
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.2956524-CDS-P-littoralis_Contig660:99815..1002081680791381.2956524-CDS-P-littoralis_Contig660:99815..100208Pylaiella littoralis U1_48CDSP-littoralis_Contig660 99816..100208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791381.3067493-UTR-P-littoralis_Contig660:100208..1002981680791381.3067493-UTR-P-littoralis_Contig660:100208..100298Pylaiella littoralis U1_48UTRP-littoralis_Contig660 100209..100298 -
1680791381.3157902-UTR-P-littoralis_Contig660:100947..1010321680791381.3157902-UTR-P-littoralis_Contig660:100947..101032Pylaiella littoralis U1_48UTRP-littoralis_Contig660 100948..101032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig660.34.1prot_P-littoralis_Contig660.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig660 99816..100208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig660.34.1

>prot_P-littoralis_Contig660.34.1 ID=prot_P-littoralis_Contig660.34.1|Name=mRNA_P-littoralis_Contig660.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQH
GNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDK
LRDAILKAPFLLVAGDESLHHGDKKFPIFVS
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mRNA from alignment at P-littoralis_Contig660:99816..101032-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig660.34.1 ID=mRNA_P-littoralis_Contig660.34.1|Name=mRNA_P-littoralis_Contig660.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1217bp|location=Sequence derived from alignment at P-littoralis_Contig660:99816..101032- (Pylaiella littoralis U1_48)
GGGTGACGCGGCTGGAGAGGAGGGTGGCTGTTCTTCAGCCGCAAGTGGAC
AAGCTGAAGAAGGCTAACACTACAGCGAAGAAAAGGTGTGCTGCGTGTCG
TGCGTTGTGTGGTTCGGTTGTGCTTTTTTTTCCAGTTTTAGTTTCGCTTT
TTTTCAGTTCTTTCTATTGCCGTTATCTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTGTCTATCTATCTATCTATCTATATGTATGTAT
GTATTCATATATGTAGTCATATATATTTTTGGTTGACTCCTACTGCTGTA
TACCAAGTATCATATATACATGTTATATATGTACATAAATGTTTTGTTGA
GACTCCTGCTGCTGCTGCTGCTGCTTACTGCTGCTTCTGTTGCTCTCGAC
TGCTGCGGCCCCCTCTGCTGTTTTACTGATTCCTTGTTGGTTTTCTCTCG
CGTATCTCATGTGGTTCGTGTGTAGCTGCTGCTGGTCCTGCTCTTGACTG
CTGTACTCTTCGCCTCTCTCAAATCCGACTGACGATACTGAACATATTAT
TTGTGTCAGTCAGTTGGTTCGATCAGAAGCGACGCGGCGGTGCTGCTGCT
GCTGCTGTACGAGTAGTTGTTTCGGTGTGTCAGTCTTGAGAAATACCAGG
TACAATGTTTTTTTCGTTTTTTTGCTGTGGATGACGAATTACTCTCTCCC
ACCCCCTCCCCTGCTGTCTTTTCGAATTACGTAGGCTGCACGACACCAAC
GAGCCGCTGCGTTGTTGAAAGAGAAGGTGAAAGGCAGCAGCGATGGAGAT
GGAGATGGTGCGGCACCTGAGGGGATGGAAGGTTCGAGGTCAGAAGGGGG
CAGTGCAGCCGAAGTTGGGGAGGATTTTTTCGAGCAGTTGAAAGCCCATG
TCAAGAGCAAACTCAAGCCAGACGGTAGTTTTGGTGAGGGTTCAGCACGC
TTTTTTCAGAAGTGTTTGCAGCATGGCAACTCCCTCAAGTCAGTGGGTCC
CATCTACTCAGCTGCAATTGAGTTCTCGACCGGGGTGCGGATGAAGGAGG
ATCTCAACATCACATGCCATCGCAACACGGTCAAGCTCTACGCTGTGGGC
ATCAACACGCTGGATGGAGACAAGCTTCGCGATGCGATTCTCAAGGCACC
TTTCCTGCTTGTAGCGGGAGACGAATCCCTTCATCATGGAGATAAAAAAT
TCCCGATTTTCGTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig660:99816..101032-

>mRNA_P-littoralis_Contig660.34.1 ID=mRNA_P-littoralis_Contig660.34.1|Name=mRNA_P-littoralis_Contig660.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig660:99816..101032- (Pylaiella littoralis U1_48)
ATGGAAGGTTCGAGGTCAGAAGGGGGCAGTGCAGCCGAAGTTGGGGAGGA
TTTTTTCGAGCAGTTGAAAGCCCATGTCAAGAGCAAACTCAAGCCAGACG
GTAGTTTTGGTGAGGGTTCAGCACGCTTTTTTCAGAAGTGTTTGCAGCAT
GGCAACTCCCTCAAGTCAGTGGGTCCCATCTACTCAGCTGCAATTGAGTT
CTCGACCGGGGTGCGGATGAAGGAGGATCTCAACATCACATGCCATCGCA
ACACGGTCAAGCTCTACGCTGTGGGCATCAACACGCTGGATGGAGACAAG
CTTCGCGATGCGATTCTCAAGGCACCTTTCCTGCTTGTAGCGGGAGACGA
ATCCCTTCATCATGGAGATAAAAAATTCCCGATTTTCGTGTCG
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