mRNA_P-littoralis_Contig117.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.13.1
Unique NamemRNA_P-littoralis_Contig117.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:39995..40953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size960
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.6834495-CDS-P-littoralis_Contig117:39994..405041680789486.6834495-CDS-P-littoralis_Contig117:39994..40504Pylaiella littoralis U1_48CDSP-littoralis_Contig117 39995..40504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.693293-UTR-P-littoralis_Contig117:40504..409531680789486.693293-UTR-P-littoralis_Contig117:40504..40953Pylaiella littoralis U1_48UTRP-littoralis_Contig117 40505..40953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.13.1prot_P-littoralis_Contig117.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 39995..40504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.13.1

>prot_P-littoralis_Contig117.13.1 ID=prot_P-littoralis_Contig117.13.1|Name=mRNA_P-littoralis_Contig117.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
QATGDWQPRERDVSGRSGSNSPRHRKYQLRLNTLYSNPESDLPALTKYRG
ADSARVSSVKNGPYRRRLTRWTKQHLLLAPMETTYTKCQPVTDCCCLQKQ
PNIVYHSLLQHVEQRYSFTPARETYRRSRPTHLTRKLYARQTCVKYESGV
FVYPFHMPDFGGGRPLFSA*
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mRNA from alignment at P-littoralis_Contig117:39995..40953+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.13.1 ID=mRNA_P-littoralis_Contig117.13.1|Name=mRNA_P-littoralis_Contig117.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=959bp|location=Sequence derived from alignment at P-littoralis_Contig117:39995..40953+ (Pylaiella littoralis U1_48)
CAGGCTACTGGTGACTGGCAACCACGTGAGAGGGATGTGAGCGGCAGGAG
CGGCAGCAATAGCCCTAGGCACCGGAAATACCAGTTGAGACTAAACACAC
TGTATTCCAACCCGGAATCGGATCTTCCCGCTCTCACGAAGTATCGTGGA
GCTGACTCAGCACGAGTTTCTTCGGTCAAGAACGGACCTTACAGAAGACG
TCTTACGCGTTGGACAAAACAACACCTTCTTCTGGCTCCTATGGAAACAA
CCTACACTAAATGTCAACCAGTTACTGATTGTTGCTGCTTGCAAAAACAA
CCAAACATTGTTTACCATTCCCTGTTGCAGCACGTAGAGCAGCGATACTC
TTTTACTCCTGCGCGGGAAACATACAGGCGCAGCAGACCGACTCATTTGA
CAAGAAAGTTGTACGCGCGACAAACTTGCGTCAAATACGAAAGTGGTGTC
TTTGTCTATCCGTTTCATATGCCGGATTTCGGTGGTGGGCGCCCGCTTTT
TTCCGCTTGAAATTTCCGTGTATGAAAACGGGGCCACGGCCAAGGAGCAG
CACCTCGACTATGCGGAGAGCATATTCGTACAGTATCCGTTTTGTGCAGA
CCGTGAACCTCTCTTCGTCGATTACCCCAGAAATATCCAAGGAGCTAACA
TTTCGACTTTGCGGAGAGCATTTTAGTATCCGTTTTGTGCAGATGGTGAA
TCCCTTTTGTCGATTACCCCAGAAACATCCTTTCGACCGGACCCTTGGTG
AAGACGTTCCCCAACATTCCTTTTTGCGGAGGAGACGACAAACGTTGAAC
CCCGGTGGCCGAAAACCTCTGAATTTTTTTTCCTGTGGTTAGCAACGATC
ACACAAGTACCGTTGGGTTCCACGTTTCACGCGCAGTTTTTTCACCGAAG
ATGCGCTCTTCAAGTACGAGGTGTTCAACGTTGAACGTGAAACCATAATT
CCTGGCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:39995..40953+

>mRNA_P-littoralis_Contig117.13.1 ID=mRNA_P-littoralis_Contig117.13.1|Name=mRNA_P-littoralis_Contig117.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig117:39995..40953+ (Pylaiella littoralis U1_48)
CAGGCTACTGGTGACTGGCAACCACGTGAGAGGGATGTGAGCGGCAGGAG
CGGCAGCAATAGCCCTAGGCACCGGAAATACCAGTTGAGACTAAACACAC
TGTATTCCAACCCGGAATCGGATCTTCCCGCTCTCACGAAGTATCGTGGA
GCTGACTCAGCACGAGTTTCTTCGGTCAAGAACGGACCTTACAGAAGACG
TCTTACGCGTTGGACAAAACAACACCTTCTTCTGGCTCCTATGGAAACAA
CCTACACTAAATGTCAACCAGTTACTGATTGTTGCTGCTTGCAAAAACAA
CCAAACATTGTTTACCATTCCCTGTTGCAGCACGTAGAGCAGCGATACTC
TTTTACTCCTGCGCGGGAAACATACAGGCGCAGCAGACCGACTCATTTGA
CAAGAAAGTTGTACGCGCGACAAACTTGCGTCAAATACGAAAGTGGTGTC
TTTGTCTATCCGTTTCATATGCCGGATTTCGGTGGTGGGCGCCCGCTTTT
TTCCGCTTGA
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