mRNA_P-littoralis_Contig66.222.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.222.1
Unique NamemRNA_P-littoralis_Contig66.222.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.222.1 vs. uniprot
Match: Q8QN61_ESV1K (EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN61_ESV1K)

HSP 1 Score: 75.1 bits (183), Expect = 2.440e-13
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  307 MATSP--FRSIEFLPEVQTILQDTTCFDIVEQDSLKVEIVDTIWGRPWWLFDKVAEILDEKFSK 492
            MAT P  +     LPEV+ +LQ+ TC  IVE+D+L V+IVD +WGRP+WLF+KV E+LDE  S+
Sbjct:  183 MATHPLAYSLSGVLPEVEHVLQNDTCVRIVEEDALLVQIVDLVWGRPFWLFEKVKEVLDEVLSE 246
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN61_ESV1K2.440e-1354.69EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:684592..685083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.4312584-CDS-P-littoralis_Contig66:684591..6847771680791380.4312584-CDS-P-littoralis_Contig66:684591..684777Pylaiella littoralis U1_48CDSP-littoralis_Contig66 684592..684777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.4434583-UTR-P-littoralis_Contig66:684777..6850831680791380.4434583-UTR-P-littoralis_Contig66:684777..685083Pylaiella littoralis U1_48UTRP-littoralis_Contig66 684778..685083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.222.1prot_P-littoralis_Contig66.222.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 684592..684777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.222.1

>prot_P-littoralis_Contig66.222.1 ID=prot_P-littoralis_Contig66.222.1|Name=mRNA_P-littoralis_Contig66.222.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=62bp
MATSPFRSIEFLPEVQTILQDTTCFDIVEQDSLKVEIVDTIWGRPWWLFD
KVAEILDEKFSK
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mRNA from alignment at P-littoralis_Contig66:684592..685083-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.222.1 ID=mRNA_P-littoralis_Contig66.222.1|Name=mRNA_P-littoralis_Contig66.222.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig66:684592..685083- (Pylaiella littoralis U1_48)
CAACTGTCTCCCCTGCAGGCTTTTGGAAAACTGTGCTCCCTTGCAATGCT
CACCACCGCGCGCGTTGGGGATGTCGAGGAAGATCCGTCGATGAGCCAGG
CGAGACCACGCCTGGCCGCCATCAACGAAAGGGGTCTTGTGACAACAGAT
TCGCAGATGGGACTTAAAACAACTTTTCAAGATGTGAAATATGGATCAGA
AGTGCTGCACTAGCAAAGTTTGAAGAACGCCGAATGTTGTTGATGGTATA
TCGTTTTTCATTGGTGTACCCAGACCCTCCCCCCCACATGAACAGATATA
TCACAAATGGCAACGAGCCCCTTCCGATCCATCGAATTTTTACCAGAAGT
TCAAACAATCTTGCAAGACACAACCTGCTTCGATATCGTCGAACAAGATT
CTCTCAAAGTTGAAATTGTGGACACCATCTGGGGAAGGCCCTGGTGGTTG
TTTGATAAAGTTGCCGAGATCCTTGACGAGAAGTTCTCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:684592..685083-

>mRNA_P-littoralis_Contig66.222.1 ID=mRNA_P-littoralis_Contig66.222.1|Name=mRNA_P-littoralis_Contig66.222.1|organism=Pylaiella littoralis U1_48|type=CDS|length=186bp|location=Sequence derived from alignment at P-littoralis_Contig66:684592..685083- (Pylaiella littoralis U1_48)
ATGGCAACGAGCCCCTTCCGATCCATCGAATTTTTACCAGAAGTTCAAAC
AATCTTGCAAGACACAACCTGCTTCGATATCGTCGAACAAGATTCTCTCA
AAGTTGAAATTGTGGACACCATCTGGGGAAGGCCCTGGTGGTTGTTTGAT
AAAGTTGCCGAGATCCTTGACGAGAAGTTCTCCAAG
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