mRNA_P-littoralis_Contig66.214.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.214.1
Unique NamemRNA_P-littoralis_Contig66.214.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.214.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.950e-5
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   31 SGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKTG 192
            +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G  +G
Sbjct:  270 AGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRPSG 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE4.950e-547.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:669222..671157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1936
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.2614782-UTR-P-littoralis_Contig66:669221..6704651680791380.2614782-UTR-P-littoralis_Contig66:669221..670465Pylaiella littoralis U1_48UTRP-littoralis_Contig66 669222..670465 -
1680791380.2817607-UTR-P-littoralis_Contig66:670996..6711571680791380.2817607-UTR-P-littoralis_Contig66:670996..671157Pylaiella littoralis U1_48UTRP-littoralis_Contig66 670997..671157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791380.2726102-CDS-P-littoralis_Contig66:670465..6709961680791380.2726102-CDS-P-littoralis_Contig66:670465..670996Pylaiella littoralis U1_48CDSP-littoralis_Contig66 670466..670996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.214.1prot_P-littoralis_Contig66.214.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 670466..670996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.214.1

>prot_P-littoralis_Contig66.214.1 ID=prot_P-littoralis_Contig66.214.1|Name=mRNA_P-littoralis_Contig66.214.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MQGVWRRQDRRGSNCRGRTGGAGVGSAAKAHGLGRHDLANLDGAGGGAGG
QQSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPAQSSESSKR
LALSVETLTRTAVLRQRLAEEGAEERRWTFRKGAKESHIAHLEKMGKINT
EQWDRAQEELLEILSNPPAQRRRQLR*
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mRNA from alignment at P-littoralis_Contig66:669222..671157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.214.1 ID=mRNA_P-littoralis_Contig66.214.1|Name=mRNA_P-littoralis_Contig66.214.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1936bp|location=Sequence derived from alignment at P-littoralis_Contig66:669222..671157- (Pylaiella littoralis U1_48)
GACGAAAAGGACGAAGATCAGGACGGGGCAAGTGGAGATGCTCAACGTGC
ACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGACTGGATCAATCCCT
TCAGCCTCGCCTTCGTGTTGTTCGGGCGGCCCGCCGGCGAGCAAGAGGAT
GTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAGC
AACTGCCGCGGTCGAACCGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGC
CCATGGGCTGGGCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCG
GGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATGTC
GCGAACTCAGAGGCAAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAGTT
TAGGGCCGAGGCCTTGAAGGCCATGACTGCCCCCGCCCAATCTTCGGAGA
GCTCGAAGAGACTGGCCCTTAGCGTGGAAACGCTCACCAGGACTGCCGTG
CTGAGGCAGCGTCTCGCTGAAGAGGGGGCCGAGGAGAGACGCTGGACGTT
CCGAAAGGGCGCGAAGGAATCCCATATTGCCCACCTCGAAAAAATGGGAA
AAATAAATACAGAGCAGTGGGATCGAGCACAGGAAGAGCTGCTGGAGATA
TTGAGCAACCCCCCGGCGCAACGACGCAGACAGCTACGTTAGAGTTGTAC
CCTACCACTACCCTTCAGGGCTCAGGTAGTGGTGCCGGAGCCGGTGCCGC
AGTCGATGGCAGTGGTGGCGGGGCAGGGGGGTGCAGCAGGAGACGATGGG
GGTATAGGAGCTGCAGGCGGTACGCTGGAATTTGCTGGTGAATCGGCGAT
ATGAAACAGCCGGGGTGGTGAGGTTTTGATTTTTTTGTTTAGCTGGAGTG
ACAGGCAAAAGAGTGGAGGCGGGGTTAAGGTCTTATTGCGACTGTCACGT
GTACGGTAAACTGGTATTTTCTGATGTGTTCGTGTTATGTCGAACCAACA
TCTGTTTTTTTTTTTTCGTGTGTGACTGCTATCGTGTGAAACAACACCAG
TTGTGAGAAGAGGGTACTGATGCGCCGGGTCGCACCATTTTAATACTTCG
TATATTTTGTTCATGTTTAATGCTGCTAAACTGCGTGCAATAACACCAGT
CGTGATCCATCTATGCCGGCATTGGTATTCCAGAAGGGGTCAGCGACACG
CAGAGTCGAACCGAATTTTTTGTTTTTTAGTGTTTGACTGCTTCTGCGTG
AAAAACAATAGTTGTGTGTTCGTGTTTACTGCTGTCGCCGTGGAGAATAA
CTGGCGGTGGTGGTTGACGCCACGTTCTTTTCGTGAGGAGAGGGATTTGA
TGCGCAGGGTCGAACCGAAGTCTTTAGTGAGAGAGGAGTAGCGGGACGTG
TGGTCGAGGTGAGATCTCGCTAGTTTTTTATTTTCGTGTTCATAGTCGTG
TGAAACAATGCTGTTGGTGTAAGACTTTTGCGCATGTGTTTTTTTGCGCA
GCGCGAGAGGTATTCTGCCAGGTTCCCACCACAAGGTTGTGTATTTGTTA
CCTTTGCGAAGATGAATCACAGTCGAAGCTGACACTGTTTCCGAAGTGTC
TGCGTGTATTTACTTCGGCAAGCTTCTCAACGGAGTTGCGCACGACGAGT
ATGCACACAGATACAACACGACGAAACGTTTCATCAGAGTCCTCTTTCGA
ACTGGGTTTAGTTACGTGTTTGCGAGAGTGAAAAATGTTTCGGCTATGCC
ACCGCAAAAATCAGGGAATTGGACACGATTCAAATACATCTCGGTACGCA
GATAAAAATCGGAGCAGTACATGTGTCGTGCGAAACAAAAACGTTGCATA
CTTGGTACTTCGTGCAACTTCAAGTGTCTTATGTGCACTTTAAGTACAGC
AGTATAGAATACTGTCATGTGAACCAGCATGCCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:669222..671157-

>mRNA_P-littoralis_Contig66.214.1 ID=mRNA_P-littoralis_Contig66.214.1|Name=mRNA_P-littoralis_Contig66.214.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig66:669222..671157- (Pylaiella littoralis U1_48)
ATGCAAGGTGTCTGGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGG
TCGAACCGGGGGTGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGG
GCAGGCACGACCTGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGT
CAGCAAAGTCGCGCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTCAGA
GGCAAAGAGGGCGGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCGAGG
CCTTGAAGGCCATGACTGCCCCCGCCCAATCTTCGGAGAGCTCGAAGAGA
CTGGCCCTTAGCGTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCAGCG
TCTCGCTGAAGAGGGGGCCGAGGAGAGACGCTGGACGTTCCGAAAGGGCG
CGAAGGAATCCCATATTGCCCACCTCGAAAAAATGGGAAAAATAAATACA
GAGCAGTGGGATCGAGCACAGGAAGAGCTGCTGGAGATATTGAGCAACCC
CCCGGCGCAACGACGCAGACAGCTACGTTAG
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