mRNA_P-littoralis_Contig66.174.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.174.1
Unique NamemRNA_P-littoralis_Contig66.174.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.174.1 vs. uniprot
Match: D8LFC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.160e-25
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 3 
Query:  477 GLLARTDADMSSASEDLGLIVCPECVEPGCDKAGNLGMVNCITCNGDLHRSCGLTGGDDGDDDDTSGFQGKRCSPCAAANKGKKRIMS-PY 746
            G L R +AD S+AS +L +I CP C+EP C+ +GN+ MV+C  CNG++HR CG+ GG   DD +T+ F+G RCSPCAAANKGKKR +  PY
Sbjct:  215 GDLGRAEADTSAASANLPVIYCPACIEPECNMSGNMSMVSCNICNGNIHRFCGVLGGTRNDDGETNDFEGTRCSPCAAANKGKKRALPMPY 305
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BLAST of mRNA_P-littoralis_Contig66.174.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.260e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3 
Query:  483 LARTDADMSSASEDLGLIVCPECVEPGCDKAGNLGMVNCITCNGDLHRSCGLTGGDDGDDDDTSGFQGKRCSPCAAANKGKKR 731
            + RT  D SSASEDL LIVCP+CVEP C KAGN+ MV C  C+GDLHRSCG+ GG++  D D   FQG +CS C+  + GK++
Sbjct:  316 IGRTAEDTSSASEDLPLIVCPKCVEPRCTKAGNIAMVACNLCDGDLHRSCGVRGGEEDADADVVEFQGIQCSRCSTTSHGKRK 398
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BLAST of mRNA_P-littoralis_Contig66.174.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.950e-21
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 3 
Query:  483 LARTDADMSSASEDLGLIVCPECVEPGCDKAGNLGMVNCITCNGDLHRSCGLTGGDDGDDDDTSGFQGKRCSPCAAANKGKKRIMS 740
            + RT  D S A+E L LIV P+C+EPGC  AGN+GM++C  C+GDLHR CG++GG + DD+  S F G+RC+PCA   +GKKR  S
Sbjct:  299 IGRTSNDFSEANEPLPLIVSPKCIEPGCTNAGNMGMISCGRCHGDLHRGCGVSGGGNHDDECDS-FVGQRCTPCAYPRRGKKRARS 383
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BLAST of mRNA_P-littoralis_Contig66.174.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.260e-16
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:  483 LARTDADMSSASEDLGLIVCPECVEPGCDKAGNLGMVNCITCNGDLHRSCGLTGGDD 653
            + RT AD SSASE+L LI+CP+CVEPGC KAGN+ MV C  C+GDLHRSCG+ GG++
Sbjct:  647 IGRTAADTSSASEELPLIICPKCVEPGCTKAGNIAMVACNLCDGDLHRSCGVRGGEE 703
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LFC4_ECTSI1.160e-2556.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI1.260e-2157.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI1.950e-2154.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPH8_ECTSI7.260e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:607662..608607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005780.1
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791379.6059096-UTR-P-littoralis_Contig66:607661..6078131680791379.6059096-UTR-P-littoralis_Contig66:607661..607813Pylaiella littoralis U1_48UTRP-littoralis_Contig66 607662..607813 -
1680791379.6306355-UTR-P-littoralis_Contig66:608107..6081831680791379.6306355-UTR-P-littoralis_Contig66:608107..608183Pylaiella littoralis U1_48UTRP-littoralis_Contig66 608108..608183 -
1680791379.642938-UTR-P-littoralis_Contig66:608383..6086071680791379.642938-UTR-P-littoralis_Contig66:608383..608607Pylaiella littoralis U1_48UTRP-littoralis_Contig66 608384..608607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791379.6177146-CDS-P-littoralis_Contig66:607813..6081071680791379.6177146-CDS-P-littoralis_Contig66:607813..608107Pylaiella littoralis U1_48CDSP-littoralis_Contig66 607814..608107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.174.1prot_P-littoralis_Contig66.174.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 607814..608107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.174.1

>prot_P-littoralis_Contig66.174.1 ID=prot_P-littoralis_Contig66.174.1|Name=mRNA_P-littoralis_Contig66.174.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MDKAREKVVRDLASSSTAPPCVVRFAISRDSDDASCDSSAASDSDNSPST
PSPTALHQRGFWRGPTPTCRQLRRTSASLSAPSALSPAATRRATSAW*
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mRNA from alignment at P-littoralis_Contig66:607662..608607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.174.1 ID=mRNA_P-littoralis_Contig66.174.1|Name=mRNA_P-littoralis_Contig66.174.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=946bp|location=Sequence derived from alignment at P-littoralis_Contig66:607662..608607- (Pylaiella littoralis U1_48)
CAGGTTTCGCTTCTCAGCGTTACGGACGTCGGCCCTCAAGCGTTCAGGAA
GGCAGGCATCTTCGGCGCTCCCAACACCCAGGAAAAGAAGAATTGCACAG
AAGTCCTCGACTCCGACAACGAAAGCGAAGACTCGGCCGACGACGACTTG
GAGTACGAAGACGGCCCCATTGAGTACATCGAGGGCGCGGGCAGCAACGA
AGAAGACGACTACGCGAAGAACGAGTCCTTCATAGACGACGACGAAGACG
ATCACGGCGACGACGACTACTGGGTTTCGAATACTGGCACCTGATTCGAT
GTAGTCGTCGTCGCCGTGATCGTCTTCGTCGTCGTCTATGAAGGACTCGT
TCTTCACGTGGTCGTTTTCTTCGTTGCTGCCCGCGCCCTCGATGTACTCA
ATGGGGCCGTCTTCGTACTCCAAGTCGTCGAGAGTTCTCCGATCTGTCCG
TAGATCAGGCGAAGGCGTGCTCGCACAACCGTCTTACGCTCGAGGGAGAG
ATGGATAAGGCTCGCGAGAAGGTCGTACGTGACCTGGCGTCATCAAGCAC
GGCTCCTCCGTGCGTCGTACGATTCGCCATCTCCCGGGACTCAGACGACG
CCAGCTGCGACAGCTCTGCCGCCTCCGACAGCGACAACAGCCCTTCTACT
CCATCGCCGACCGCTCTTCACCAACGGGGCTTTTGGCGCGGACCGACGCC
GACATGTCGTCAGCTTCGGAGGACCTCGGCCTCATTGTCTGCCCCGAGTG
CGTTGAGCCCGGCTGCGACAAGGCGGGCAACCTCGGCATGGTAAACTGCA
TCACGTGCAACGGAGACCTCCACCGTTCGTGTGGTCTCACCGGTGGCGAC
GACGGTGACGACGACGACACGTCCGGCTTTCAGGGAAAGCGCTGCTCCCC
CTGCGCCGCCGCAAACAAGGGCAAGAAGAGGATAATGTCGCCGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:607662..608607-

>mRNA_P-littoralis_Contig66.174.1 ID=mRNA_P-littoralis_Contig66.174.1|Name=mRNA_P-littoralis_Contig66.174.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig66:607662..608607- (Pylaiella littoralis U1_48)
ATGGATAAGGCTCGCGAGAAGGTCGTACGTGACCTGGCGTCATCAAGCAC
GGCTCCTCCGTGCGTCGTACGATTCGCCATCTCCCGGGACTCAGACGACG
CCAGCTGCGACAGCTCTGCCGCCTCCGACAGCGACAACAGCCCTTCTACT
CCATCGCCGACCGCTCTTCACCAACGGGGCTTTTGGCGCGGACCGACGCC
GACATGTCGTCAGCTTCGGAGGACCTCGGCCTCATTGTCTGCCCCGAGTG
CGTTGAGCCCGGCTGCGACAAGGCGGGCAACCTCGGCATGGTAA
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