mRNA_P-littoralis_Contig66.156.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig66.156.4 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE) HSP 1 Score: 1463 bits (3787), Expect = 0.000e+0 Identity = 1061/1692 (62.71%), Postives = 1209/1692 (71.45%), Query Frame = 2
Query: 707 PSPDIRRSRADLPSGLARSPPSNSPPHRPSS--------VPYGGLIPAAVPSGAVAGVAGPGGGALSGVYLGALGYGXXXXXXXXXXXXXXXXXXXXXXXXXXSLPPVSPASATSSGRYVVGVSPXXXXSSHQKGMFSMASSATS--GSELMYSPSPSNMGREVQEAQRQRRMRVGAREVLAPSVGSAGSTKGFTRHTAGRNNGSGRHRHGGGSGPVDTGAGRGIDRTREANEGGEVGTEVEENSDHSGEGVEDDGVSTVSRSSLLVGEPRPDVTKHRSPATIFPTGGXXXXXXXXXXXSTSEGLEDYKLGEGKDNLSDDSRHMGSDDGDADGLVGSTFLGNFGDQGAVATAAGVRVGAVGGGA--DGWARVRGLRSHPLSYRYHHPKIRPTHASPKVAPTEACHKTH-ADDHGLGGMEFVCSPGGTGVLNAFCSPLSEATAAAAGSEMTQAAKLATSVRFGGVSDIQANLDRAEKSHLIGRDGEGASLLMHAAQRGETEVFRVVLDFLGDKLTHQE---VLAEFCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRVLKEQLLMGSQDRDKGCILEAVALAGWLS-SPQLQPAVLDVLDAAWDELEY---ERIMVSADQQAFQHAVRQRDLLGLSCILSHGFGLSPALIEGLVESCGPRCVQDCFMEAVASARNPLVPSLGLLSSLSTAKEEAACPLHASWFLFMQRMLEKLVLQVLNNLPVSARAFNKRGIGGWSSNV-SRMNSFARMNNGAS-TGAAFIXXXXXXXXXGVGSNRHRR-LRGGSFXXXXXXXXXXXXXXXX-----VNGNGTMGPNNGSIAV-GSGHEGGSGKATDSGGSHAVVYNARAKESLLVAKWVFEPEAEAVGMRGAAFEGPLAVALRIGWEQFVCSPIVLDLLRAKLTAGVELGMFSSAAKPAQW-YAKQAGPAASG----SCVTAAAMVAAPVHSTXXXXXXXXXXXX------ATG-RAEGGDARRSSPGCLEKVAAGDWDITVAPSLQAVLVAVATRPGVFYRVPAARLALDGVIYLCMLVVYTVVLYRAKAGNVDPCEVLLYVWVIGTC---VSRGAGGGFGDDATELDDEDPTAKRVEQQRQRQEDSPQGEGQDRGRSCCCPPFVEGRLATVVLVAAMLCRIGDYSQASFLFFLDLDEFLHVDGEFGFFEVSLVLLAAAAPFLLLGLLRAAAAFLPELGPTVKAISLLAREAFKVLPTMACLLFGTALALHVLFGEGSSLLEGEDYPEAFVEAFRTFGVSCGTVTRAGLGDVYVPDDDLPYGEALQAFLYLFAAAGALGLVSILVAVLANTKAAGPDEMEKRFQLTRARVIIRAAEASRGDTLPPPFNLAQGALTLLVSATQCCRRTPERRKRVSRACSRLGRFVFWLVMGSLALISAVLLYFASLPWFWWISLKRVVETPGETPGTLLAVARTTVWCFFGVPVRLFVSWILAATQVVGGDKAGRRARMAVRRSVLRGREGGDYDLSRMLRRTRWGAGGGSNSLAQGCSVRDIVAAMEDPLQRGCCFRNVSSCFADEGPGTVAQMKALARRNQEHQTRISDRLKGLEVAVLSTLARMDAVSDETARVQQQYLTSQS 5650
P RRSRAD+PSG RS PSNSPP RP S + Y GL+PA +PSGAVAGVAGPGGGALSGVYLGALGYGXXXXXXXXXXXXXXXXXXXXX SLPPVSPASA+SS R+V GV XXXXSSHQ+GMFSM SS T+ GSEL YSPSPS G ++QEAQRQ+R+R+G+RE+ A S SAG+ K FTRH A N+ S GGSG V G G R EG +VG+EV G+S V G V A I G E L DYK G+G D LSDD RHMGS+DGD DGLVGS+FL NFGD GAVATAAGV VG VGGG +GWA VR LR+ P SYR++HP+I+PTH SP+V P+ K ADD GLGG++ + SPGGTG L+AFCSPLSEATAAAAGSEMT AAKL TSVRFGGV DI+ANL RA+K L+ RDGEG SLLMHAAQRGET+VFRVVLD L +KL+ QE +L EFC Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSR+LKEQLL GS+DR+KG ILE+VA+AGWLS PQLQPAVL++LD+AWDELE +R++VSA+Q+AFQHAVRQRDLLGLSC+LSHGF LSP LIEGLVESCGPRCV+DCF+EAVASARNPLVPSLGLLSS+STA++EA+CPLHASWFL MQ LEKLV+QVL NLPVSARAFNKRGIGG SN+ SRMNSFA MN+G+S GA XXXXXXXXX HRR ++G SF XXXXXXXXXXXXXXX NG T GP+ G++ + G G E GSGKA DS V++NARAKESLLVA+WVFEPE+EAVGMRGAAFEGPLA+AL++GW + VCSP+VLDLL AKLTAGVEL + S A PAQ K+A G S A A PVH+T XXXXXXXXXX AT R E D RSSPG K AA WDIT+APSLQAVLV VA+RP VFYRVPAARLALD V+YL ML +YTV LYR + G++ P EVLLY+WV+ C V+ GAGG GD TE + A+ + Q+R+ DY + VDGE+ F+ + L A+AAP LL LLR AAFLP LGP VKAISLLAREA KVLP++ACLL GTALALHV++G+GS LLEG + FV+ FRTFGVSC TV RAG GD+ VPD+D+PYGE L LY+FAAAGAL LVSI V VL+N K A P EMEK FQL RAR+I+RAAEASR + LPPPFNLAQG L L+VSATQC R ERR+ VS ACS GRFVFWLV+G LA+ SA+LL A+L +FWW S+KR+ E P P L + RTT+ C P+RL W+ A + V+ GDKAG+RAR R++VL+GREGGDY LS +LRRTRWGAGGGS+SLAQG SVRDIVAAM+DPLQRG FRNV+SCFADEGP TVAQMKALA+RN E++ RISDRLKGLEVAVL TLARMDAVS+ETA+VQQ+YL SQS
Sbjct: 103 PGQSARRSRADVPSGPIRSSPSNSPPLRPLSGSFGPGAGLSYSGLVPAVLPSGAVAGVAGPGGGALSGVYLGALGYGXXXXXXXXXXXXXXXXXXXXXI----SLPPVSPASASSSVRFVAGVXXXXXXSSHQRGMFSMISSGTTPHGSELAYSPSPS-AGDKLQEAQRQQRVRLGSRELQATSAASAGAAKSFTRHRASSNSTSDSISRAGGSGRVGVVVGSG--RAERTAEGNDVGSEVGSIG----------GISEVG-----AGXXXXSVHSGEGAAAIGDGAGD------------GERLGDYKAGDGNDTLSDDGRHMGSEDGDTDGLVGSSFLTNFGDHGAVATAAGVSVGVVGGGGAVEGWAPVRALRAPPRSYRHNHPRIQPTHVSPRVGPSNPPQKPPPADDSGLGGVQLLSSPGGTGALDAFCSPLSEATAAAAGSEMTHAAKLKTSVRFGGVGDIRANLGRADKQQLVSRDGEGVSLLMHAAQRGETDVFRVVLDILAEKLSEQEASCMLEEFCGQDEDGQTPLLFAARSGSGAVFRQALKALNARAPPEKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSRLLKEQLLAGSEDREKGSILESVAMAGWLSRGPQLQPAVLELLDSAWDELERSVDDRLLVSAEQEAFQHAVRQRDLLGLSCVLSHGFRLSPVLIEGLVESCGPRCVRDCFLEAVASARNPLVPSLGLLSSVSTARKEASCPLHASWFLLMQNTLEKLVIQVLTNLPVSARAFNKRGIGGGRSNIFSRMNSFAPMNSGSSMVGAGXXXXXXXXXXXXXXXXXHRRFVKGNSFNXXXXXXXXXXXXXXXXXXXXTNGTVTTGPHCGTVLLPGLGQEAGSGKAGDSR-CGTVIFNARAKESLLVAEWVFEPESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQVPVEKRAREGRRGMLARSAPAPAVTAATPVHNTAAXXXXXXXXXXXXXXXXATATRVERMDPARSSPG-NSKHAAASWDITIAPSLQAVLVGVASRPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSIGPWEVLLYIWVLSMCFSEVTTGAGGVVGDADTERREGGTPAEPLRQRRR-----------------------------------------DYRGDA------------VDGEWMCFQGFVALFASAAPLLLFRLLRGVAAFLPVLGPAVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELSGGFVDGFRTFGVSCRTVARAGFGDIQVPDEDVPYGEPLYVLLYVFAAAGALALVSIYVGVLSNVKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLAVASAMLLNLAALFYFWWFSVKRLFEDPRRAPRMLYVLLRTTLRCGVCAPLRLLGWWVAAVSCVLKGDKAGQRARTVARKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIVAAMDDPLQRGGPFRNVTSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQS 1705
BLAST of mRNA_P-littoralis_Contig66.156.4 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI) HSP 1 Score: 934 bits (2413), Expect = 1.230e-306 Identity = 618/1043 (59.25%), Postives = 712/1043 (68.26%), Query Frame = 2
Query: 2600 GSRVLKEQLLMGSQDRDKGCILEAVALAGWLS-SPQLQPAVLDVLDAAWDELEY---ERIMVSADQQAFQHAVRQRDLLGLSCILSHGFGLSPALIEGLVESCGPRCVQDCFMEAVASARNPLVPSLGLLSSLSTAKEEAACPLHASWFLFMQRMLEKLVLQVLNNLPVSARAFNKRGIGGWSSNV-SRMNSFARMNNGASTGAA----------FIXXXXXXXXXGVGSNRHRRLRGGSFXXXXXXXXXXXXXXXXVNGNGTMGPNNGSIAV-GSGHEGGSGKATDSGGSHAVVYNARAKESLLVAKWVFEPEAEAVGMRGAAFEGPLAVALRIGWEQFVCSPIVLDLLRAKLTAGVELGMFSSAAKPAQWYAKQAGPAASGSCVTAAAMVAAPVHSTXXXXXXXXXXXX-------ATGRAEGGDARRSSPGCLEKVAAGDWDITVAPSLQAVLVAVATRPGVFYRVPAARLALDGVIYLCMLVVYTVVLYRAKAGNVDPCEVLLYVWVIGTCVSRGAGGGFG--DDATELDDEDPTAKRVEQQRQRQEDSPQGEGQDRGRSCCCP-PFVEGRLATVVLVAAMLCRIGDYSQASFLFFLDLDEFLHVDGEFGFFEVSLVLLAAAAPFLLLGLLRAAAAFLPELGPTVKAISLLAREAFKVLPTMACLLFGTALALHVLFGEGSSLLEGEDYPEAFVEAFRTFGVSCGTVTRAGLGDVYVPDDDLPYGEALQAFLYLFAAAGALGLVSILVAVLANTKAAGPDEMEKRFQLTRARVIIRAAEASRGDTLPPPFNLAQGALTLLVSATQCCRRTPERRKRVSRACSRLGRFVFWLVMGSLALISAVLLYFASLPWFWWISLKRVVETPGETPGTLLAVARTTVWCFFGVPVRLFVSWILAATQVVGGDKAGRRARMAVRRSVLRGREGGDYDLSRMLRRTRWGAGGGSNSLAQGCSVRDIVAAMEDPLQRGCCFRNVSSCFADEGPGTVAQMKALARRNQEHQTRISDRLKGLEVAVLSTLARMDAVSDETARVQQQYLTSQS 5650
GSR+LKEQLL GS+DR+KG ILE+VA+AGWLS PQLQPAVL++LD+AWDELE +R++VS + + A+R+ GL P SCG F Q+ LEKLVLQVL NLPVSARAFNKRGIGG SN+ SRM GAS A XXXXXXXXX XXXXXXXXXXXXXXXX NG TMGP+ G++ + G G E GSGKA DS AV++NARAKESLLVA+WVFEPE+EAVGMRGAAFEGPLA+AL++GW + VCSP+VLDLL AKLTAGVEL + S A PAQWYA+ GP+A GS A A PVH+T XXXXXXXXXXX AT R EG D RRSSPG L K AA WDIT+APSLQAVLV VAT P VFYRVPAARLALD V+YL ML +YTV LYR + G+VDP EVLLY+WV+ C S A G +G DA E TA QR R + S + RG C C PF G+ +TVVL+AAM+CR+GDY Q S D VDGE+ F+ + LLA+AAP LL LL AAFLP LGPTVKAISLLAREA KVLP++ACLL GTALALHV++G+GS LLEG + P V+ FRTFGVSC TV RAG GD+ V D+D+PYGE L LY+FAAAGALGLVSILV VL+N K A P EMEK FQL RAR+I+RAAEASR + LPPPFNLAQG L L+VSATQC R ERR+ VS ACS GRFVFWLV+G LAL SA+LL A+L FWW S+KR+ E P P L + TT+ C P+RL W+ A + V+ GDK G+RAR AVR++VL+GREGGDY LS +LRRTRWGAGGGS+SLAQG SVRDI AAM+DPLQRG FRNVSSCFADEGP TVAQMKALA+RN E++ RISDRLKGLEVAVL TLARMDAVS+ETA+VQQ+YL SQS
Sbjct: 41 GSRLLKEQLLAGSEDREKGSILESVAMAGWLSRGPQLQPAVLELLDSAWDELERSLDDRLLVSGARGVLRAALRE--------------GLLPG-------SCG----------------------------------------------FGQKTLEKLVLQVLTNLPVSARAFNKRGIGGGRSNIFSRMXXXXXXXXGASMVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGMVTMGPHCGTVLLAGLGQEAGSGKAGDSRRG-AVIFNARAKESLLVAEWVFEPESEAVGMRGAAFEGPLALALQMGWTELVCSPLVLDLLWAKLTAGVELDVHSCGANPAQWYARLPGPSA-GSAPAPAVTAATPVHNTAXXXXXXXXXXXXXXXXXXAT-RVEGVDPRRSSPGHL-KNAAASWDITIAPSLQAVLVGVATGPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSVDPWEVLLYIWVLSMCFSEVATGVWGVVGDADTDPREGGTAAEPLGQRHRVKRS-----RKRGSLCSCSSPFFGGKFSTVVLMAAMMCRLGDYVQDS-----GGDA---VDGEWRCFQGFVALLASAAPLLLFRLLGGVAAFLPVLGPTVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELPGGSVDGFRTFGVSCRTVARAGFGDIQVLDEDVPYGEPLYVLLYVFAAAGALGLVSILVGVLSNLKEASPVEMEKNFQLARARLIVRAAEASRRNVLPPPFNLAQGGLALVVSATQCHRHVSERRQAVSGACSVHGRFVFWLVLGPLALASAMLLNLAALFCFWWFSVKRLFEDPRRAPRMLYVLLCTTLCCGVCAPLRLLGWWVAAVSCVLKGDKVGQRARTAVRKAVLKGREGGDYHLSHLLRRTRWGAGGGSSSLAQGFSVRDIAAAMDDPLQRGGPFRNVSSCFADEGPSTVAQMKALAKRNHENEARISDRLKGLEVAVLGTLARMDAVSEETAKVQQEYLASQS 999
BLAST of mRNA_P-littoralis_Contig66.156.4 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI) HSP 1 Score: 339 bits (870), Expect = 8.540e-92 Identity = 219/390 (56.15%), Postives = 255/390 (65.38%), Query Frame = 2
Query: 1088 MFSMASSATS--GSELMYSPSPSNMGREVQEAQRQRRMRVGAREVLAPSVGSAGSTKGFTRHTAGRNNGSGRHRHGGGSGPVDTGAGRGIDRTREANEGGEVGTEVEENSDHSGEGVEDDGVSTVSRSSLLVGEPRPDVTKHRSPATIFPTGGXXXXXXXXXXXSTSEGLEDYKLGEGKDNLSDDSRHMGSDDGDADGLVGSTFLGNFGDQGAVATAAGVRVGAVGGGA--DGWARVRGLRSHPLSYRYHHPKIRPTHASPKVAPTEACHKTH-ADDHGLGGMEFVCSPGGTGVLNAFCSPLSEATAAAAGSEMTQAAKLATSVRFGGVSDIQANLDRAEKSHLIGRDGEGASLLMHAAQRGETEVFRVVLDFLGDKLTHQEVLAEFCAQ 2242
MFSM SS T+ GSEL YSPSPS G ++QEAQRQ+R+R+G+RE+ A S SAGS K FTRH A N+ S GG SG V G G R +EG ++ +EV S S + V A I GG E L DYK G+G D LSDD RHMGS+DGD DGLVGS+FL NFGD GAVATAAGV VG VGGG +GWA +R LR+ P SYR++HP+I+PTH SP+V P+ K ADD GLG ++ + SPGGTG L+AFCSPLSEATAAAAGSEMTQAAKL TSVRFGGV DI+ANL RA+K L+ RDGEG SLLMHAAQRGET+VFRVVLD L +KL+ QEVL EFC Q
Sbjct: 1 MFSMISSGTTPYGSELAYSPSPS-AGDKLQEAQRQQRVRLGSRELQAASAASAGSAKSFTRHRASSNSTSDSISRGG-SGRVGVVVGSG--RAERTSEGNDMSSEVG---------------SIGGISEVXXXXXXXXVHSGEGAAAIGDGGGD------------GERLGDYKAGDGNDALSDDGRHMGSEDGDTDGLVGSSFLTNFGDHGAVATAAGVSVGVVGGGGAVEGWAPIRALRAPPRSYRHNHPRIQPTHVSPRVGPSNPPQKPPPADDSGLGRVQILSSPGGTGALDAFCSPLSEATAAAAGSEMTQAAKLKTSVRFGGVGDIRANLGRADKPQLVSRDGEGVSLLMHAAQRGETDVFRVVLDILAEKLSEQEVLEEFCGQ 359 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.156.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig66.156.4 >prot_P-littoralis_Contig66.156.4 ID=prot_P-littoralis_Contig66.156.4|Name=mRNA_P-littoralis_Contig66.156.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1793bp MSDAKPAPAPEPPSARVAPPPQTQGVAPLLAPAPAPQPPPPRSPPIASGDback to top mRNA from alignment at P-littoralis_Contig66:536537..571257- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig66.156.4 ID=mRNA_P-littoralis_Contig66.156.4|Name=mRNA_P-littoralis_Contig66.156.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=34721bp|location=Sequence derived from alignment at P-littoralis_Contig66:536537..571257- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig66:536537..571257- >mRNA_P-littoralis_Contig66.156.4 ID=mRNA_P-littoralis_Contig66.156.4|Name=mRNA_P-littoralis_Contig66.156.4|organism=Pylaiella littoralis U1_48|type=CDS|length=5379bp|location=Sequence derived from alignment at P-littoralis_Contig66:536537..571257- (Pylaiella littoralis U1_48)back to top |