mRNA_P-littoralis_Contig117.89.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.89.1
Unique NamemRNA_P-littoralis_Contig117.89.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:313360..315157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1075
Hectar predicted targeting categoryother localisation
Exons2
Cds size618
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.5570261-CDS-P-littoralis_Contig117:313359..3134051680789486.5570261-CDS-P-littoralis_Contig117:313359..313405Pylaiella littoralis U1_48CDSP-littoralis_Contig117 313360..313405 -
1680789486.5669541-CDS-P-littoralis_Contig117:314130..3147021680789486.5669541-CDS-P-littoralis_Contig117:314130..314702Pylaiella littoralis U1_48CDSP-littoralis_Contig117 314131..314702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.5771759-UTR-P-littoralis_Contig117:314702..3151571680789486.5771759-UTR-P-littoralis_Contig117:314702..315157Pylaiella littoralis U1_48UTRP-littoralis_Contig117 314703..315157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.89.1prot_P-littoralis_Contig117.89.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 313360..314702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.89.1

>prot_P-littoralis_Contig117.89.1 ID=prot_P-littoralis_Contig117.89.1|Name=mRNA_P-littoralis_Contig117.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MTEVEVAAAAAAAHHEGWRWHRMWRRRQISSGINKSSINRNSNVGYGKDI
AASKQQQQLQQQQQPSVRFLRPVSTAAAVAVGCLALLLGRPAVATAAASA
TITAATATSELRSVGGDGGGGPVFLSAAAPAAQAELAAAQQDPAPVRQAR
RRLLLGGEIPANENDGVEVAYSSSSSSSGGEAEARQEDDKGSVEVLPNLE
EDKEEE
back to top

mRNA from alignment at P-littoralis_Contig117:313360..315157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.89.1 ID=mRNA_P-littoralis_Contig117.89.1|Name=mRNA_P-littoralis_Contig117.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1798bp|location=Sequence derived from alignment at P-littoralis_Contig117:313360..315157- (Pylaiella littoralis U1_48)
AACTCATCGTCTCCTCTTAATCTCGACATGCTGGTGGATGCGTGTGCGGT
GTGTGGTGTATTTGTATAGCAGCAGGCAGGTAGCAGGACTGCAGGCACGC
CTTCGTGGGGCAACGCAGTTTTTAAAATCAGGTGCAAAGAGTCACACCCA
CGTCCACCGGGTTCGAAACTTCCTTCCCGCAGCGGAGCGACCAACACTGC
ACAGGCCAGGCAGCCAGGCAGGGCTGACGCTTTATACTGGGCGATACTGC
CTTGTTTTAGAGCCGTACTACTGCTGTACACGATCAACATCCCATCCCTC
CACGGTGACGTTCGCTTCGGCTTCGGCTTACCTGATACGCGCGGTCGTTG
TCATCCTGCTTGGCAATCGTGTTATTGGCCCCCACCGTAAACAGCAGTCT
ACTCCTGTTACCAAAAACAAGGATTCTATCCGCCGACACAAATACAGCCG
TCGGGATGACCGAGGTCGAGGTAGCAGCGGCAGCAGCAGCAGCACACCAC
GAGGGTTGGCGGTGGCACCGGATGTGGCGGCGGAGGCAAATTTCAAGCGG
CATCAACAAGAGCAGCATCAACAGAAACAGTAACGTGGGCTATGGGAAAG
ATATCGCTGCGTCGAAACAGCAGCAACAGCTCCAGCAGCAACAGCAACCT
TCTGTGAGGTTTCTCCGACCGGTGTCTACTGCTGCTGCTGTCGCCGTCGG
ATGCCTCGCCCTGCTTCTCGGTCGCCCTGCCGTTGCCACCGCCGCCGCTT
CCGCTACTATTACTGCTGCTACTGCAACAAGCGAGCTCAGGTCGGTTGGT
GGTGATGGTGGTGGTGGGCCTGTTTTCCTCTCCGCCGCAGCCCCAGCAGC
GCAGGCGGAGCTGGCAGCAGCACAACAAGATCCTGCGCCAGTGCGGCAAG
CGCGGAGGAGGCTGTTGCTGGGTGGAGAGATACCGGCAAATGAGAACGAC
GGAGTGGAGGTAGCTTACAGCAGCAGCAGCAGTAGCAGTGGCGGGGAGGC
AGAGGCCAGGCAGGAAGATGATAAGGGGTGAGCGAGTCCGTACCGTTATG
GATTGGTGTACGTTTGGTGAACGGGATGAATTTACCAGAACACTACACCG
GTCGCCCCCGTGGTTCAGTTGGTAATCCACGTAACCTTCTGACATTCACG
CGTGAGTCCGAATCCCAGTGCAGTAACACGATCTGGGTTTCCTTCTCACA
ATGCGCGTGAAAGTGGAAATCGATTAATTCGTGAGTAAACAAAATTTGAT
CGTACCATCGACGAGGGAAAGGGAATGCTGTCCCCTTTCTCGCGATAAAA
GCTCAACCAAAAACAAGGTAAGCACCGCAGAGGGAAGTGGAGAAAAAAAA
AAAAAATCCTGTGTTGACTTCCCCCTGTGTGACCCCAGTTGGAGCGTTGA
CCTACCCGAAAGGTGCAGAGTGGCACCCAATTAAAGGGATGACAACACAC
ACACACTACATACCCAGGTGTGCAGCAGACTGTTGCTGGACCAAGAAGTC
GGGCTAATTTTAGCTTCTTTTCTATGGAAGGGTGCGGTAAAGGTAAACCG
ACCGATTGCCCCCTTTTTTTTGTCTGCGCCACTCCATCAGAGCAGCTTTG
TCTACAAACATGCCTATCGACCAGAACACGAGCGGCCAAAAAAAAATAAT
TCTTACACCTGCTTGCTGCTGATGATGCATGCGTCTCTTGCATGAACAAA
CGACGCCCCTGCAATCATATCCTGGAAATTTGTATTCTTGATTGTCGAGA
AGGTCCGTGGAAGTTCTACCGAATCTAGAGGAAGACAAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig117:313360..315157-

>mRNA_P-littoralis_Contig117.89.1 ID=mRNA_P-littoralis_Contig117.89.1|Name=mRNA_P-littoralis_Contig117.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig117:313360..315157- (Pylaiella littoralis U1_48)
ATGACCGAGGTCGAGGTAGCAGCGGCAGCAGCAGCAGCACACCACGAGGG
TTGGCGGTGGCACCGGATGTGGCGGCGGAGGCAAATTTCAAGCGGCATCA
ACAAGAGCAGCATCAACAGAAACAGTAACGTGGGCTATGGGAAAGATATC
GCTGCGTCGAAACAGCAGCAACAGCTCCAGCAGCAACAGCAACCTTCTGT
GAGGTTTCTCCGACCGGTGTCTACTGCTGCTGCTGTCGCCGTCGGATGCC
TCGCCCTGCTTCTCGGTCGCCCTGCCGTTGCCACCGCCGCCGCTTCCGCT
ACTATTACTGCTGCTACTGCAACAAGCGAGCTCAGGTCGGTTGGTGGTGA
TGGTGGTGGTGGGCCTGTTTTCCTCTCCGCCGCAGCCCCAGCAGCGCAGG
CGGAGCTGGCAGCAGCACAACAAGATCCTGCGCCAGTGCGGCAAGCGCGG
AGGAGGCTGTTGCTGGGTGGAGAGATACCGGCAAATGAGAACGACGGAGT
GGAGGTAGCTTACAGCAGCAGCAGCAGTAGCAGTGGCGGGGAGGCAGAGG
CCAGGCAGGAAGATGATAAGGGGTCCGTGGAAGTTCTACCGAATCTAGAG
GAAGACAAGGAGGAGGAG
back to top