mRNA_P-littoralis_Contig66.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.92.1
Unique NamemRNA_P-littoralis_Contig66.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.110e-56
Identity = 84/123 (68.29%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            QA+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AI QT+GILVRRWGILW+P+E+R+     +V ++VRLHNFC
Sbjct:  211 QAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 333          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.250e-56
Identity = 82/123 (66.67%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            QA+CDAQYRI AWTM+CPGSQNDRTAF  + F KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AI QT+GILVRRWGILW+P+E+R+     +V ++VRLHNFC
Sbjct:   59 QAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 181          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.560e-52
Identity = 78/122 (63.93%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPGT ++ SQD+ N+Y SQ RI I Q FG +V+ WGILW+PL+++LG V+ ++ ++VRLHNF
Sbjct:  152 QAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNF 273          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 5.770e-50
Identity = 79/122 (64.75%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            Q +C+A+Y I AWTMNCPGS NDRTAFK S F  +L+ LP G YIVGDAAYP SD VLVPYPGT ++ SQDA N+Y SQ RI+I Q FGI+V+ WGILW+PL++RL  V+ ++ S+VRLHNF
Sbjct:  218 QGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNF 339          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.510e-46
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            Q IC+A Y I  WTMNCPGSQNDRTAFK SGF  LL  +P   +IVGDAAYP S+ VLVP PGT ++ SQDA N+Y SQ RI+I Q FGILV+ W ILWKPL +RL  V  ++ ++VRLHNF
Sbjct:  222 QGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNF 343          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 9.820e-44
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    4 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369
            A+CDAQYRI AW MNCPGSQNDRTAF  SGF KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AI QT+GILV   G+    +E        +V ++VRLHNFC
Sbjct:  141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFC 255          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.460e-33
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C   YR  A     PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ I Q+FGILV  WGILW PL ++LG    L+ +L+ LHNF
Sbjct:   61 QAMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWTPLRMQLGGRGDLITALLHLHNF 182          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.080e-32
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG ++   +D+ N++LSQ R+ I Q+FGILV  WGILW+PL ++LG  A L+ +L  LHNF
Sbjct:  252 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNF 373          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.370e-32
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ I Q+FGILV  WGILW+PL ++    A L+ +L  LHNF
Sbjct:   95 QAMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNF 216          
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.700e-31
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366
            QA+C A YR  A +   PGS ND  A+  S   K +  LP G++I+GDAAYP  + +L PYPG  +   +D+ N++LSQ R+ I Q+FGILV  WGILW+PL ++ G  A L+ +L  LHNF
Sbjct:  289 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDSFNFHLSQVRVMIEQSFGILVATWGILWRPLHVQYGGRADLITALFHLHNF 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B6_9PHAE1.110e-5668.29DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE1.250e-5666.67DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE5.560e-5263.93DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE5.770e-5064.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE9.510e-4663.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE9.820e-4461.48DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6X9_9PHAE9.460e-3346.72DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE1.080e-3248.36DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KQF5_9PHAE1.370e-3246.72DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5L3C4_9PHAE1.700e-3147.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:306552..307167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size369
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-24
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791376.4709616-CDS-P-littoralis_Contig66:306551..3066471680791376.4709616-CDS-P-littoralis_Contig66:306551..306647Pylaiella littoralis U1_48CDSP-littoralis_Contig66 306552..306647 -
1680791376.4846857-CDS-P-littoralis_Contig66:306894..3071671680791376.4846857-CDS-P-littoralis_Contig66:306894..307167Pylaiella littoralis U1_48CDSP-littoralis_Contig66 306895..307167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.92.1prot_P-littoralis_Contig66.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 306552..307167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.92.1

>prot_P-littoralis_Contig66.92.1 ID=prot_P-littoralis_Contig66.92.1|Name=mRNA_P-littoralis_Contig66.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAA
YPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILVRRWGILWK
PLELRLGNVAPLVESLVRLHNFC
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mRNA from alignment at P-littoralis_Contig66:306552..307167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.92.1 ID=mRNA_P-littoralis_Contig66.92.1|Name=mRNA_P-littoralis_Contig66.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig66:306552..307167- (Pylaiella littoralis U1_48)
CAGGCTATCTGCGACGCGCAATACAGGATTAGGGCATGGACTATGAACTG CCCGGGAAGCCAAAACGACCGCACGGCCTTTAAGGTTTCCGGCTTCCCCA AGCTCCTCGAAGCTTTGCCGAAAGGTTACTACATCGTGGGGGACGCGGCG TACCCGGGTTCGGACGTCGTTCTCGTTCCGTACCCGGGAACGAAGGTGTC GGATAGCCAGGATGCGTTGAACTACTACCTGTCTCAGTGCAGGATTGCCA TCGGGCAGACGTTCGGGATCCTGGTGAGTATCAAGTGTCAACTTCTGTGT TCGCATAGAACGGGTGCTGTTGTTGTCGGATACTATTTTGTTCTCGTGCA CGTAAAACTTAGGTTTTACGTGTGGGTCTGCACGGGGTGATTTTTTTTCG GAACAGTCTTGTTGCGTGAGTTTTGCTGAACCTTATAGATCACGAGCACA CGAGCAGGTTTCTATATCATTCATTCTTGACTGTCCACCTATTTTTGGCG TTTCTCTTGATGATATGTAGGTCAGGAGGTGGGGCATCCTCTGGAAGCCG TTGGAGCTCCGGCTGGGCAACGTTGCCCCGCTTGTCGAGAGTCTCGTTCG CCTGCACAACTTCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:306552..307167-

>mRNA_P-littoralis_Contig66.92.1 ID=mRNA_P-littoralis_Contig66.92.1|Name=mRNA_P-littoralis_Contig66.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig66:306552..307167- (Pylaiella littoralis U1_48)
CAGGCTATCTGCGACGCGCAATACAGGATTAGGGCATGGACTATGAACTG
CCCGGGAAGCCAAAACGACCGCACGGCCTTTAAGGTTTCCGGCTTCCCCA
AGCTCCTCGAAGCTTTGCCGAAAGGTTACTACATCGTGGGGGACGCGGCG
TACCCGGGTTCGGACGTCGTTCTCGTTCCGTACCCGGGAACGAAGGTGTC
GGATAGCCAGGATGCGTTGAACTACTACCTGTCTCAGTGCAGGATTGCCA
TCGGGCAGACGTTCGGGATCCTGGTCAGGAGGTGGGGCATCCTCTGGAAG
CCGTTGGAGCTCCGGCTGGGCAACGTTGCCCCGCTTGTCGAGAGTCTCGT
TCGCCTGCACAACTTCTGC
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