mRNA_P-littoralis_Contig66.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.62.1
Unique NamemRNA_P-littoralis_Contig66.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: D7G2J8_ECTSI (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2J8_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 1.300e-155
Identity = 247/285 (86.67%), Postives = 264/285 (92.63%), Query Frame = 1 
Query:    1 MQSLARATARAAAEHASSCLRPRNVAFLSRQGGALAMKAA--AAAAGDLPLATHGRSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESVVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLATWPTIAAILKREYVEV 849
            MQSLARAT RAA EHA  CLRPRNVA LSR+G A+A+KAA  AAAAGD+PL T GR +GGLASKVD VLAEIPMKEAVRYKKGNLKWTRSD+KSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKL SA AV KILE+SG+AV LVEESVVP+L EAV ELRHYSTDSGLPFRSAKLPSLRLCIHTGL+REAALLHFRSALLYTPPVSPL QVNG++KESAPLHT FSEGTGGTP+KGKTLSHA+V+ LA+WPTIAAILK+EYVEV
Sbjct:    1 MQSLARATGRAA-EHA-GCLRPRNVASLSRRGAAVALKAATAAAAAGDMPLTTQGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLVEESVVPSLIEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALLYTPPVSPLAQVNGQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVSLASWPTIAAILKKEYVEV 283
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BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A7S3XZ81_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ81_HETAK)

HSP 1 Score: 172 bits (436), Expect = 7.220e-45
Identity = 93/238 (39.08%), Postives = 145/238 (60.92%), Query Frame = 1 
Query:  154 HGRSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESVVPA------LTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVS-PLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLATWPTIAAILKREYVE 846
            +GRS+  +AS++++ +AE   KEAVRY   N+KWTR D++  ++ALA GLLE  C  GD++A+WLPECSEKHV QLAAA+ G+V A+ D  + + EA+G  L  SG+ V L+  S + A      L +A+ EL  Y  ++G PF S+  P+L+L IHTG D  A   +F+   +  P     L  +   +K+  PL+  +++ +GG   KG+ ++H   +    W  + +IL ++Y+E
Sbjct:   43 NGRSLASIASQINSAVAENEYKEAVRYTHKNIKWTRKDVQFQTDALANGLLEAACNPGDSIAVWLPECSEKHVTQLAAAKAGLVFADFDLSIDTPEALGDALADSGAKV-LIFNSELDAVNCGRVLFDAIPELSGYYNNTGAPFHSSSFPNLKLMIHTGYDSLAGFHNFKHLPVPHPATGGKLGVILPHLKDDTPLYVKYTKDSGGKATKGEVMTHGTALSSKEWSVVKSILDKQYIE 279
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A835Z6E9_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.810e-44
Identity = 94/234 (40.17%), Postives = 143/234 (61.11%), Query Frame = 1 
Query:  160 RSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESVVPALTEAVSELRHYSTD---SGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVM-RLATWPTIAAILKREYVEV 849
            RS   +A+ ++ +  E+PMK+ VR+ K N  WTR+++K  SEALA G  +LGC+ GD +A+WLP+ +EK   QLAAA  G  +  VDP L   E   K+L ++G+ +A+V E    +L +A+ E+  Y+ +   SG  FRS +   LR C HTG D E+  L FR+ L+Y   +SP+ Q+   + + +PL   +SE   G    G T+SH DV+ + ++W  +A+IL +EYVEV
Sbjct:   24 RSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSE-KNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 256
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A7S2XZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZH5_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.010e-40
Identity = 91/234 (38.89%), Postives = 142/234 (60.68%), Query Frame = 1 
Query:  175 LASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECS-EKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEE-----SVVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLATWPTIAAILKREYVEV*RH 858
            +A+++  V    PMKEAVRY+  N K TR DI ++S AL+ GLLEL     DTM +WLP+ S EKHVA LAAA++G+ VA+V   +   EA+ ++L  +G+ + +++      + + AL +AV EL H++   G+PF S  LP LR+  HTG D      +F+  L++ P  S + ++   +K+  PL+T +++G  G   KG+TL++  V+  + W   +AIL  +YVEV  H
Sbjct:   32 IAAQLKDVTDANPMKEAVRYQDKNFKCTREDIDAYSYALSNGLLELCVAPNDTMVLWLPDDSAEKHVAMLAAAKMGVTVADVSQDVQKPEAIRQVLSDTGARMIMIDTEHPDYNYLHALVKAVPELLHFNDKHGVPFHSHTLPKLRMFFHTGYDVIKGFCNFKHVLMFNPGESQVPKILPFLKDDTPLYTPYTKGPDGMAVKGETLTNGQVLSHSAWKVHSAILGGQYVEVESH 265
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BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A7S2CY20_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY20_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.280e-27
Identity = 73/229 (31.88%), Postives = 125/229 (54.59%), Query Frame = 1 
Query:  172 GLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLP-ECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESV-----VPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLATWPTIAAILKREY 840
            G+  K+  ++   PM E V++ K NLKW+ +D+K +S+A + GL++ G KAGD++A+WLP + +E    + AAARIG+++ E+D  ++ A+A+  IL ++     + +           L E + EL+HY    G  FRS  +PS++  +H  +D    + +F+  ++Y P  + +         SAPL   +   T  T    + LS  DVM    WPT+ AIL +++
Sbjct:   39 GIQEKLATLVDAHPMMETVQFNKQNLKWSMADVKRYSDAFSSGLVDNGWKAGDSLAVWLPADTAESLTVKFAAARIGLLLVEIDMSVSEADAIRSILVENNCKGLIYDLEAGDRHNTDILKEIMPELKHYDDKFGDQFRSRVVPSMKFIMHVNMDLIPGVGNFKYQMVYDPRPALIPPAPDL---SAPLTVNY---TSDTLSGARVLSQEDVMTEQAWPTVGAILDKKF 261
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A7S2WCA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCA9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.550e-25
Identity = 69/218 (31.65%), Postives = 123/218 (56.42%), Query Frame = 1 
Query:  205 EIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLP-ECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESVV------PALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLATWPTIAAILKRE 837
            ++P+KEA+ +K  N+KW+  D+K HS+ALA GLLELG ++GD +A+W+  +C E+ V + A++R G+ + E+D  ++  E++ KIL ++ +A  LV + V+        +  A+ EL  +    G  FRS  +PS+ L  HTG+D    +++ +  L Y  P S  +     +K+      ++  G G T     +L   + ++ A W  ++ IL++E
Sbjct:   41 DLPLKEAIAFKVNNVKWSYQDLKEHSDALAAGLLELGWRSGDVLAVWVESDCQEQIVTRFASSRAGLGLVEIDAGVSDPESLRKILNET-NAKGLVFDPVMGDRYNQDIVEAALPELASFDDRFGGRFRSRAVPSIGLVAHTGMDLVPGVVNLKHLLAYDAPESRFNSTTSGMKQVV----SYGSGGGAT-----SLKEDEALQSAPWNLVSGILRQE 248
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: K3X788_GLOUD (AMP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X788_GLOUD)

HSP 1 Score: 102 bits (255), Expect = 3.210e-20
Identity = 68/224 (30.36%), Postives = 115/224 (51.34%), Query Frame = 1 
Query:  145 LATHGRSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEESVVPA-LTEAVS----ELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLA 801
            LA   R+   +   +D  +  +P KEA+R  K +L+W+  ++ +  + +A G   L  + G+ +A+WLP  +E  + QLAAA+ G+ +A +DPK+++AE +  IL  S ++  L E  +     TE V     EL  Y  +  L FR     +L   I TG +    +  F   ++  P    ++ V   V E  PL  ++S+  G  P+KG+ L+H DV++ A
Sbjct:   20 LALGARAASTVGGALDEAVERLPHKEALRSLKQDLRWSFKELNAIVDEVANGFHSLKFEPGNVLAVWLPNNAESVITQLAAAKAGVTLAVIDPKVSTAEELEYILHDSKASGLLFEPKIAGRNQTEIVQGLFPELATYRENFRL-FRPKNFRNLHTVISTGFEPVEGIAQFHQVMVNAPEKHEVETVKQVVNEKTPLAVSYSKVNGQNPKKGEVLTHGDVLKRA 242
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: G5A2G9_PHYSP (AMP-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A2G9_PHYSP)

HSP 1 Score: 90.9 bits (224), Expect = 3.120e-16
Identity = 63/239 (26.36%), Postives = 116/239 (48.54%), Query Frame = 1 
Query:  109 MKAAAAAAGDLPLATHGRSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEES--------VVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLA 801
            M A A + G +  A   R+   + + +D  +A +P KEA+R  K +++W+  ++ +  + LA G L+L  +AGD +A+WLP  +E  + QLAAAR G+ +A ++P+++ AE +  IL  S +A  + E          +V  L   ++  R         FR  +   L   I T  +    +++    ++       +  V   + +  PL   +S+  G  P+K   L+H D+++ A
Sbjct:    1 MLALARSKGLMRAAMGARAASTVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLPNSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFEPKQAGRNQTEIVQGLFPELATFRERME----VFRPKQFRHLHSVITTSWEPVEGMINLNGMMVNNAEPYAMKAVTKTLSDKTPLAVTYSKVEGQNPKKSAVLTHGDLLKRA 235
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: UPI001FF5FBB5 (AMP-binding protein n=1 Tax=Sphingobium sp. MAH-33 TaxID=2933566 RepID=UPI001FF5FBB5)

HSP 1 Score: 92.4 bits (228), Expect = 8.740e-16
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = 1 
Query:  187 VDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAE---AVGKILEQSGSAVALVEESVVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFR--SALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVMRLA 801
            +D      P K+A+  + GN++++ S++K+ ++  A GLL LG K GD + +W P C+E  +AQLA AR GM++  ++P    AE    +GK+  ++    A  + S   A+TE+   + H+    G    S  LP+ R  I  G +     L F   + L      + L  +   +K   P++  F+ GT G P KG TLSH +++  A
Sbjct:   26 LDRAAQRWPDKDALVARHGNIRYSWSELKAATDDFAAGLLALGVKPGDRVGIWAPNCAEWTIAQLATARAGMILVNINPAYRVAELEYTLGKVEVRALICAASFKNSDYLAMTESF--VTHFGEQPG-EIVSVDLPAFRYAIKIGGEPRPGWLDFSEVAGLRTAASETELASIAATLKADDPINIQFTSGTTGAP-KGVTLSHRNILNNA 231
[Close]
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Match: A0A7X0H2B5_9SPHN (Fatty-acyl-CoA synthase n=2 Tax=unclassified Sphingopyxis TaxID=2614943 RepID=A0A7X0H2B5_9SPHN)

HSP 1 Score: 88.2 bits (217), Expect = 1.910e-14
Identity = 66/206 (32.04%), Postives = 106/206 (51.46%), Query Frame = 1 
Query:  190 DAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVGKILEQSGSAVALVEES-----VVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLCIHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGGTPQKGKTLSHADVM 792
            D  +A  P  EA+  +  +++W+  ++K+  +A+A GLLE G K GD + +W P C+E  V QLA A+ G+++  ++P    AE +   L + G    ++  S      +  L E   EL    T +    R+A+LP LRL I  G    A  L F +  L +    PL  V  ++  + P++  F+ GT G P KG TLSH +++
Sbjct:   24 DRTVARHPDSEALVVRHQSVRWSWRELKARVDAVAAGLLERGLKPGDRVGIWAPNCAEWVVVQLATAKAGLILVNINPAYRVAE-LDYALNKVGCTALILAPSHKSSDYIAMLGELAPEL---PTSTPGMLRAARLPDLRLVIALGGRDHAGCLPFDA--LASADTGPLADV--RLDPAMPVNIQFTSGTTGFP-KGATLSHRNIL 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J8_ECTSI1.300e-15586.67AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3XZ81_HETAK7.220e-4539.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z6E9_9STRA1.810e-4440.17AMP-binding domain-containing protein n=1 Tax=Trib... [more]
A0A7S2XZH5_9STRA2.010e-4038.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CY20_9STRA7.280e-2731.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WCA9_9STRA7.550e-2531.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3X788_GLOUD3.210e-2030.36AMP-binding domain-containing protein n=1 Tax=Glob... [more]
G5A2G9_PHYSP3.120e-1626.36AMP-binding domain-containing protein n=3 Tax=Phyt... [more]
UPI001FF5FBB58.740e-1630.95AMP-binding protein n=1 Tax=Sphingobium sp. MAH-33... [more]
A0A7X0H2B5_9SPHN1.910e-1432.04Fatty-acyl-CoA synthase n=2 Tax=unclassified Sphin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:212723..221825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2J8
PFAMsAMP-binding,AMP-binding_C,NAD_binding_4,PP-binding
Model size2286
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00004,RC00014,RC00017
KEGG koko:K00666,ko:K01897,ko:K14156
KEGG TC4.C.1.1
KEGG ReactionR01021,R01280,R01468
KEGG Pathwayko00061,ko00071,ko00564,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,ko05231,map00061,map00071,map00564,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920,map05231
KEGG ModuleM00086,M00090,M00092
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.69e-163
EggNOG OGsCOG0318@1|root,KOG1177@2759|Eukaryota
Ec32 ortholog descriptionAMP-dependent synthetase/ligase
Ec32 orthologEc-11_002500.1
EC2.7.1.32,2.7.1.82,6.2.1.3
Descriptiono-succinylbenzoate-CoA ligase activity
Cds size852
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.62.1prot_P-littoralis_Contig66.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 214157..221825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791375.9105742-UTR-P-littoralis_Contig66:212722..2141561680791375.9105742-UTR-P-littoralis_Contig66:212722..214156Pylaiella littoralis U1_48UTRP-littoralis_Contig66 212723..214156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791375.9266882-CDS-P-littoralis_Contig66:214156..2143091680791375.9266882-CDS-P-littoralis_Contig66:214156..214309Pylaiella littoralis U1_48CDSP-littoralis_Contig66 214157..214309 -
1680791375.9373012-CDS-P-littoralis_Contig66:215127..2153491680791375.9373012-CDS-P-littoralis_Contig66:215127..215349Pylaiella littoralis U1_48CDSP-littoralis_Contig66 215128..215349 -
1680791375.9538398-CDS-P-littoralis_Contig66:216161..2163171680791375.9538398-CDS-P-littoralis_Contig66:216161..216317Pylaiella littoralis U1_48CDSP-littoralis_Contig66 216162..216317 -
1680791375.9687135-CDS-P-littoralis_Contig66:218003..2181671680791375.9687135-CDS-P-littoralis_Contig66:218003..218167Pylaiella littoralis U1_48CDSP-littoralis_Contig66 218004..218167 -
1680791375.9817643-CDS-P-littoralis_Contig66:221668..2218251680791375.9817643-CDS-P-littoralis_Contig66:221668..221825Pylaiella littoralis U1_48CDSP-littoralis_Contig66 221669..221825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.62.1

>prot_P-littoralis_Contig66.62.1 ID=prot_P-littoralis_Contig66.62.1|Name=mRNA_P-littoralis_Contig66.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=284bp
MQSLARATARAAAEHASSCLRPRNVAFLSRQGGALAMKAAAAAAGDLPLA
THGRSMGGLASKVDAVLAEIPMKEAVRYKKGNLKWTRSDIKSHSEALACG
LLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAEAVG
KILEQSGSAVALVEESVVPALTEAVSELRHYSTDSGLPFRSAKLPSLRLC
IHTGLDREAALLHFRSALLYTPPVSPLDQVNGKVKESAPLHTAFSEGTGG
TPQKGKTLSHADVMRLATWPTIAAILKREYVEV*
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mRNA from alignment at P-littoralis_Contig66:212723..221825-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.62.1 ID=mRNA_P-littoralis_Contig66.62.1|Name=mRNA_P-littoralis_Contig66.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9103bp|location=Sequence derived from alignment at P-littoralis_Contig66:212723..221825- (Pylaiella littoralis U1_48)
ATGCAGTCCTTGGCTAGAGCCACGGCGCGAGCCGCCGCCGAGCATGCTAG
CTCCTGCTTGAGGCCACGAAATGTGGCGTTTCTCAGCAGGCAAGGGGGGG
CGTTGGCGATGAAAGCGGCTGCAGCAGCAGCGGGAGATCTGCCGTTGGCA
ACGCATGGTGCGTTCTCATTTCTAGAGTTTTGTTTTTTTGGGTATGCACG
AGTATAAGGTAAAGGAGAGAGGGAGATTCGGTGACCAAAATCACACTGGA
GAAGAGACGTGCTCTGTTTTTTGCAGTGACTTTATTTCGGGGTTGTCCAT
GTGGACGCAGGACCCGGGCGATGATGCGCAAATACTCCAAAGTGCGATAC
TTCCTCTGTCCAAGCTGTTACAGCACTTGTGTGCTGTTTGCCAGCTTTAT
CCACATTCGCGTGCGGTTAGCGATAACAAGGACGGCAGATGCCCCCTACT
GAGACCCTATCTAATCGTCAGGCTCCTCTATACAGGCACGCCGCTTTGTA
AAACGGCGGGATTCCTATGAAACTAGGACAAGCAGCATATCCTGCTGTAA
GCAATAGCAGAATGATATACCGCCAAGTTCTCACTTCCTGATACAACTGC
TGCCATGCCCTGCCCACGATCCGATGAAGTGGGCATTCTAGATGATACCG
GAATATCTTGAAGCATGCGTCGAACGTGTAGCTGACGTCGCGAGGATTCA
CGAGAGACATTTTGCACCATCTGACGCTGCCGCTGGACTGCAGAAAACGA
TTCAAGTACAGCATGACAAATATGATACGAATGCTACTTCGAAGTATATG
ACAAGTCCGGGCGGTTGTTCTCTTTTTCTATATACACCAGTTCAAGTATG
ATACGTTGGCTCCATCCGCTGATGGGCATAACATTCGTTGTTGTACGAAG
GCCCTACGTAGTATTTCGTAGTTCTTGCATCATATATTTCCTATTTATGA
TTCGTACATATGCTTACAAGCATCATATGCACTTCGTATGTGATATCTCA
TTAGATAGCAGCAGTACGATACAGTATGGTGATCCTGAGACTATTCCGTA
TCCCATGCAACCAACTGGATGGATTTTCCGCTGTTTCTCTCGCGACGGTC
TATGCCCAAAATTGTGTGTGTGACATGCCCAAGAGTTGTACTTCGAGGTA
TGATATGATATCACACAATGCCTGATATTCACAGCAGTACTATGCACGAC
GCCAGAGGTTGAGACCATGCCCACCCTTCAAGTCACGCGGATCTACAACA
ACACCTTGTATTGAGTTCGTATGTATGTTCCTCGCGTCTCGCAGCGGTAA
GCGGCGGCGGGGGGGGGGGGGCGTAACTACAAGACAAGTCCTTGAGTCGA
TGGCATATTCCGGTTGGACGCACGTATCGGTCCAACACGCGTTTGTTGTT
TTCCAAAGGCCGTTTGGCCTGTCCATTCAATTTGGGAACATACACGACCG
CAGCCGAAAATGGCCCTGCTGTGAAACACAAAAATGAGTTGTGGCGCTTG
TTGTTTCGTCTCCGTCCTCTCGCCGCAACGATTGCAAGGTTTGCCTCAAA
ACGCTCTGTGTGCAGCGGTGTGATTCTTTTTTTTTGATAAAAAAAAAAAT
ACTTCGAAGTATGAAGTACGAAGTATCATGCTTTGAATTTCTTCTTCTTA
GGCATTTTATCAATGTCCTGCTTGAACAATCAGCTGGTATATAATATTGC
GTGCGCGTGCAAGTGTCGAATGGCGCGCGTACATGATGGTGCTCCTGCCG
TCGGCGGCTGGTGTTGTGTTGTTCATACTCATCCCGAACACTGCTGCAAC
CGGCGGGGCGTCGATGATGACGAGTGACCTTTATCCCCCCCTCCCCCCCC
CCCCGGGGGCCGGAGTTCTTCGACAGACCCGAGAAACAGACAAAGGTTTC
AGCAGGAGTGGCGGGCTCTCGTCTCTGCTGTTGGGGTCGATGTATATGTG
GGTCCCACCCGATGTGCGCGTGTGATGATCCGTCCCACCGTCAAGTCAAT
CCGTGTTTGCATCAACGCGATCAATTTTCACATCTGACTAGCTTTGTGTT
GTGCCATGTCACGATGGTCCCCGGTGCCGCGGCCGACGGTGAAGCGGCCT
TTTAAATGTTCGATTCATCCTATCCATTATTAGTCGAGATTCGCTTTTTC
TAGCCTATCATAGCCCCGGCTACGACGAAAATATTTACGGGAAAAATGAT
GTGGGCTCAAGCGCGACAAAGGCAAGATTATCGATGCCGTCGCCGCTAGA
TCAGAGCAGCGGTTGGGATGCGGACGTTCATGCCATGAGCACGTTCGACA
CCGGCCACTGCGGCTTTTCGCGTGTTTTTCTTTCCGACCCCCCCCCCCCC
CCCGTTGTAAATCCGCGCGAAAGTGGGCGCAATCCGCGTCCTTGGCCATG
GTTGGGTTGGCCTTTTGCCCTCCCAGTTTTTTTATTCGTGCTATTATGGG
GTCACGTGCGTGTGATCCCAGCCCACCACCGTTCATGCGGAGGCTGGAGC
GAGGTCAGACTACACCAAGACACTTTCTCGTGCCCTACGTACACTACACC
TCTCAACGCGAAACCCTCTGGGCGGCCTCCTCCGTTCGCTGCTCTCCACT
GGTAGGGCTTAATCGACAGAGGACAGCATCGCTGTGCATGGGATATTTTC
CACAATTATTCCTTGAGGCGGGAGAACGAGTAGTCTTTTCTCAAGTTCAA
AGCCAAGAGGCCATATTCTATAGTCTGCCTTTCGGCTGGTATTTCAATTA
TCGAGCGACGCTTCTTTGTCTTTCTGCCGAAAGAATGGGCCCCAGCTCCA
ACCGAAGGTCCCACCGATGGAGAGCAGTGAATGGAGGTGACAGGACAGAG
GGTCTCGCGTTGACATGTGATGTAGGGAGTGAGATCGATTGTGGTGTAGT
CTCGTCCTCTCTGAACTGTCGGGTCCTGGGGGTTCAAACAACGCACGTGC
CACGCAATCCCGTGCTTCAACTGGCAGCTGCTCGAATAACAAAATTTTGA
AAATCTCGCGCGTTCAATCCAAACTAGTGGCCGAAGCATTGGCACGCGGA
TGCTGGGATTGCTCCGAGCCCTGTATGAGCTTCTTTCGTTGAGGTTCCAT
GGCGCAGCAGTGGTTGGTTTAGCGGACTGACGTCTGGCAGTAAATTGTAG
TCTCGCCGCGTCAAACAAGATTTTCAAGACTGCTGCGGTCGGGACCTGTT
TACCGCGTATCACCCGACAACAATGGCCAAACTCGACCAATCTGGGAATG
AAGCTGAGAATTGAGCCGATTTCTTCGGATTTGTTTTCCTCCGTAAACGT
GTCAAGAAAATATCAGACGGCGAATCGAGGACAAGGTCAGGATTTTCACG
ATGTTGTCGTCCGCACAAAAGGTCCGATGCGGCAGCGATATCAAACACAA
CAGAGCACACACTCAAGCGTAACAAAAATGTAATTCTTCTGCTGTAACTA
TGTGACTTGTCTTTCTCCCGTCATATCATATTCTTTCGAAGTGCGAAGTA
GTATTTACGCCCGGGGAGGGGCCAAGCAGCACTTTCCCAGGGCGCTTTCG
TCAGTCAAGTCTATAATCTTGATTTAATTACGCCATTTCGTTTTGGACTG
GTCTTCTTCCTTCCTTGTCATCGATATGTACACATGTAAAACGCGTGTAT
TTTGCTAGGTCGATCTATGGGGGGACTGGCGTCGAAGGTGGACGCGGTGT
TGGCGGAAATTCCGATGAAGGAGGCCGTCCGCTACAAGAAGGGCAATCTC
AAGTGGACCAGGTCCGACATTAAGAGCCACTCAGAGGCGCTCGCATGCGG
CCTTCTCGAATTGGGGTGCAAGGTGAGATGATATATGTGATGGAAAGACT
AGCCGCGTCGGAGATGAGAGAATTTCGGGGGCACGTTTCCAGTCCCCTGG
TGTGCGTGTGTTGTGTGTTTGAGTTTGCTTGTATCGTGTTGTGTTGTTTG
GATTTGGATTTGGGCCGTCCATGTCGGTGTGCCCACAACGCAGATCGTGC
ACACCTCGTTGGTTGTGCGATTCGTTTGTGCCCGTGTGTGTCGATGGAGC
ATTTTAGCTCGGTTCTGGTTTGTGTTGTTGTTGTTGTTGATTCTAAAATT
AGCTTACCCACGAAAGTATAGCCCGTGGTCACAAACCATACACATATCGT
GTTACTGCACACATATATCGTGTTGGAAAAGAAGAAAAAAACAACTGTCG
CCCAGACAAAATCAGACATTAGATAAAGTACCGTTGGGGTACCATATGTG
GTGGCTTAAGTACAGAAATGCACAACAAGCTCGATGTGTGTGTGCGGGTC
AGGTGCATCGTGAAACGCCACGAGGAGGCGCACACGATCGTGCGACCTTT
CTTGAACCGGGTCGCAACGCGGGGACGGATGGTAAAAAAATAAAACCAAA
ACGGAAGATGTGGCTAGTCCGCCGCTTTGGTACCACTTGCGTGGTGGCTT
GGCGTATACCTGGAACTGTACTTACTACGCGGTGTTGTCGCGACTTCCTA
CCATTTTCGGCTTCGGAGGTGTGAAGCGTACGGCTTCTTCTCCCGTCGCA
CATCACGAGCAAGTGTTGCCAAAAAGAGCACCATTACGTAGATCCCAATT
GCTGCAACGCCAGATCCAACGACAGGCCCCCACGCGCGGTCCACGCAACC
TTGATCCCTTCGTTGCGCGGACCGCGCGTCGCGCTTGGCGGAGTGCTGTT
GAATCTGGTGTTGTAGTTGTTGGGATCTATTGGTGGTCCTCTCGGTACGC
TTGCTCGTGACGTGCGACAGAAGAACAAGCCGCACACCACCTCCGAAGAA
AAAACGTTCAAGGGGTCAAGGGGAGATTACCGCCAAAAAACTTCGCAGCT
AATTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATCTCTCATTAG
CTCGATACCCAAGTCTAGCCCGTGGTCACAAACCAGGTACATCTCGTGCC
AGGGTGGATAACATACGAAAAAGGAAATAAGCTACAGTATGTTCGCCCAA
ACAAAAATCAGAGATATTACCGTGGTACCCTTTGTGGTGGCCACCGCACA
AAAAATACAAAAACACAGGCTCGAAAGCAAAATTGGAAACACACAAAACC
ACCGCCACCGCCACCACACAAACGAAAAGCTCGATTTTTTTGCTTTGTCT
TGTTGAAGCCAAACCGTTCCGATCACTTCCCCGGTGACAGACGCCTGGCT
TCCTCCCGTGGTCACCTGTAAGTTTAAGTGCGTGACACAAGCAGGGTCCT
GCTGATTAACGCTGAACACAGACAAGAGAGTCAGTAGAAATCGGTACCTG
TGTTGTTTGGACCTCTCAACATTACAATGGTTGAAAGTGAGAACAAAATA
AGGCGTCCAGATCCTAACAAGCACACAAGACCGTGTTGTTTTTGTTGTTG
TTGCTGCTGCTGCAGTTGTTGGCGTTGTTGCTATTGTCGCTAATTTTGTT
GATGTTTTGATGTTTTGTTGTTTTTATGGTTGCCGTTGCTGTCGGACGCG
ACCAACAGGCCGGGGACACGATGGCGATGTGGCTACCGGAGTGCTCCGAA
AAGCACGTGGCGCAGCTGGCGGCAGCGAGGATAGGGATGGTGGTTGCCGA
GGTCGACCCCAAGCTTGCGTCGGCGGAGGCTGTCGGAAAGATCCTCGAGC
AGTCGGGCTCGGCGGTAAGCGCACCATCTTTTTTATTCTCAAGTGGATGG
AGAAAATCACGTCTTTTTTCGTTCGTTGCTGCTTCGACAAGCCAAGTCAC
ACTTCCGAAACATTAGCACAGCGTGTTTTCATGGACCACGCTCTGCACTG
GGGCCATGTTTTTTTTTACATTCCGGTCCAGATGACCACACTTTGTCCAG
ATGGCACCATACTCGCGTAGATATGCCCTGCCGTGGGCATGTTTTATACT
GGCAATGGCGGAGCAGCGAAAAAATTATACCAGGTACTTCGTAGTATTGG
GGGGGGCGCGCGATACTTTCCGTCGTGGATGGCACTACCTGCTGCCACTG
CGTTGGCTTTCATCCTGAGTGCTCCGATGCGGTGCCTCGTGTCGCTGGGA
GGGGGCCCTTGCCGTGTTTCCCCACGACGGCACCGTACACCACAAAACGT
GATACCAAAACCCCCCGTCGCCACCCTTGTAGCACGGGGTGCTACTTGTT
CATTGCGCTCAAAGAATGACACCGCACCAGAGCTACTTGCACACGGAACC
ATTTTTGGTCAGTAGCCGGTAAAATTGGTCGCGGTTGTGTCGTTGTTTCG
GCTGAGCTTTGCGCTCGCGGCGAAGTCAGACGTATACGAATTCACGAAGG
ATATCCCGTTGTGTCATTATTTATTGTTTGCCTACATGCCACCGAGTACC
AAAGATCCAAACAACTGCACCCATGAAAACGAGCATAGACTTGCAAAAAG
ACACTTCCGCAATACGTGAGATTTTGACCTGTAAAAATGTCTCGTATCTT
TTTTTTTCCTTTCCTCTTTCTGGCAGGTGGCGCTGGTGGAGGAATCGGTC
GTACCCGCTCTAACTGAGGCTGTGTCGGAGCTCCGCCACTACAGCACCGA
CTCGGGCCTCCCCTTCCGGTCGGCCAAGCTTCCGTCCCTCCGTCTGTGCA
TCCACACGGGCCTCGACCGAGAAGCGGCCCTACTGCACTTCCGCAGCGCG
CTCCTCTACACGCCTCCCGTTTCTCCGCTCGACCAGGTCAACGGAAAGGT
GTGTATTTTGTCCGGCGTCTGTAAAAGCGTTCGGTGTTTTTTGTGTGTCT
CTGTGCATTTTGCGTCTTCATTTTTAGTGTGGGGGACCGCGCTCACCGGC
TGACCAACATACAGTGGGTGCTAGCAGGCCTGTCCGATCTGTTGTTCGTC
GGTAACTCAAATTGTGGAGCGCGCTTGCTCTGGTGTGTACACGGTCTTTT
TTTAGGGGGCCTCTCAAAACACTTTCCTGCCAGTTTTTGTAACCGTTTCG
AACCGAAGCGGAACCGGGCCAAACCTCGGGTAGAGCTCTCCCCTTCGGTG
TTGCTGTTGTTCAAAACAGGCCCATGGAAGAATCCCGCTATTAGTCGTAA
TTTGCAACCCCCCCCCCCCCCCCCGTCGTTCATTTCCCTTTTTGGTTGTC
TCCGTGTTATGACGCCTCTGTGTGTGTGTGTTGTCACCCCTTTAATTGGA
TGCCACTCTTACACCTTCGGGTAGGTAGACGCTCCAACCGGGGTGACACA
GTAGGAAGTCAACACAGGAGTTTTTTCATTTTATTTCTTTTCGTTCACTT
GCCACTGCGGTACCTGCCTTCATTTTTTCTCGCGAGAAAGGGTACAGTTA
TCCCTTTCCCTCGTCGACGCTTCGAATTTTGTTTACTCACGAATTAATCG
TTTTCCACCCTCACACATGGCATGAGAAGAAATCCGGATAGTGTTACTGC
ACCAGGATTCGAACTCAAGCGTAAGTGTCAGAAGATTTCGAGAATAATCA
ACTGAACCACCGGGGCGACCTCTGTCCTCCTTTATTTTAACTGTTTTGCT
GCGACGCGACAAACAGGTGAAGGAAAGCGCTCCGCTGCACACGGCCTTCT
CGGAGGGCACCGGCGGAACTCCCCAGAAGGGCAAGACCCTTTCCCACGCG
GACGTGATGCGGCTCGCCACCTGGCCGACGATCGCGGCGATCCTCAAGAG
GGAGTACGTCGAAGTTTAACGGCATTTTGGCGAAATTTATTTCAATCCAT
CTCTCTCGGTCCGTTGACGGAGTCGCCCGACCGGCTGGGTGAGAGTCGTT
TGGTGGAATTAGGTTGATCGATGGAGCTCGGTCGGTTTTCGAGTAGTACG
TGGTGGTTTCGTAAAAGTCAACGCGTGCTGTTCTTCCATCATACTTGTAC
CTGTCTGATGACGGGTCGGATCGGCTTTCGGATCAGGTGGTTTTTTCGTT
CTGTGTGTCATCTTTCTGTCTGATCACGGGTCGAAGCGGCATGCGGAGGA
GGCGATTTTTCCTTCCGGACGAATTCTAGTTGTCAAAGAGAGGGCGAGAA
AAGGTGTCCGCAGTTTTCTGATGGTCAGTTTTTAGAAATCGTCCGGGCAC
CTTTTATCTCTCTCGTAACTTGCGGTTCATTGTTGTGTCGGTTGGTCGGT
TGGTCAGCCTTGCTTCGTGGCGCCGAGATTCGTTCCGTAGATATTCTGGT
GACATTTTGTCGAGAGTTGGATGGATGTTTGATCGACTTGGGTCGGTACA
AGGGCTGCGGTTGATTGTTTTAAGCATGATGACGTTGTTTTATCGAGTGG
ATCAGGTAGTCTCATGACAGGCCCAACTTGGGGTTTCTACTTTTAGCTCA
TCGTTGAGGAGAAAGGCCCGACCGATATCGTCGTTGTGCCTGTTCTGTGT
CTTGTGTTGTGATCTCCACGCAGGCGTTCCACTTTTTTTTTCTCCTGTGC
GCTGTTTTGTCCACGACCCGAAGAAGTAGCTCACGACACCCGGACGTATT
CGACCTGTTACAACATCCGACTGATGAATTAATGTGGAAAACGAATACCC
TGGCATGGACGTTGAAAAGACAGGAAACACGTGAAAAAAGTCGGTTAAAC
TTTACTCGATCACGGGAAATCCTTGGGCGCATTATATGATATGATTGGCT
GCCAACCGTAAGGCACCCTTCATGATCCTGACTGCACATTTCGCGCCACA
AATTTCGACTTCGACTGGCCCCTCACCGGTCGCCCCGGTGGTCTCGTGGT
CCCCTCCTTAACCTGCTTGCTAGTTGTAAGGTCGTAAATTCGATTATCTC
TGAGAGCGTTGTGTGCGACCCCGTGGAAAGCGAGGTCCTGGTGAGTAACA
AGAGGGAAGGGATTGCTGTACCCGACTAGCATTAAAAACCAAAGGCACGT
ACCGCAGAGGAAGGTTTGGGCAATGAAATGAAACAAAATAAAAAGGGTAA
CGAAAGGTGCTGACTGGTTCCCAGAATAAATGGGATAACACACACGAACA
CTTTCACTCGATCATGGTAAATCCTTCGACGCACGATATGATTGGCTGGC
AAGCTTATGGCACCCTTCCATGGTCCTGACTGCACACCTGAATTTAGGCC
GAAGCCGACTCACCGACTTTCCTGAGGTGAATCAAACGCATGTGGGTTTC
CGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:212723..221825-

>mRNA_P-littoralis_Contig66.62.1 ID=mRNA_P-littoralis_Contig66.62.1|Name=mRNA_P-littoralis_Contig66.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig66:212723..221825- (Pylaiella littoralis U1_48)
ATGCAGTCCTTGGCTAGAGCCACGGCGCGAGCCGCCGCCGAGCATGCTAG
CTCCTGCTTGAGGCCACGAAATGTGGCGTTTCTCAGCAGGCAAGGGGGGG
CGTTGGCGATGAAAGCGGCTGCAGCAGCAGCGGGAGATCTGCCGTTGGCA
ACGCATGGTCGATCTATGGGGGGACTGGCGTCGAAGGTGGACGCGGTGTT
GGCGGAAATTCCGATGAAGGAGGCCGTCCGCTACAAGAAGGGCAATCTCA
AGTGGACCAGGTCCGACATTAAGAGCCACTCAGAGGCGCTCGCATGCGGC
CTTCTCGAATTGGGGTGCAAGGCCGGGGACACGATGGCGATGTGGCTACC
GGAGTGCTCCGAAAAGCACGTGGCGCAGCTGGCGGCAGCGAGGATAGGGA
TGGTGGTTGCCGAGGTCGACCCCAAGCTTGCGTCGGCGGAGGCTGTCGGA
AAGATCCTCGAGCAGTCGGGCTCGGCGGTGGCGCTGGTGGAGGAATCGGT
CGTACCCGCTCTAACTGAGGCTGTGTCGGAGCTCCGCCACTACAGCACCG
ACTCGGGCCTCCCCTTCCGGTCGGCCAAGCTTCCGTCCCTCCGTCTGTGC
ATCCACACGGGCCTCGACCGAGAAGCGGCCCTACTGCACTTCCGCAGCGC
GCTCCTCTACACGCCTCCCGTTTCTCCGCTCGACCAGGTCAACGGAAAGG
TGAAGGAAAGCGCTCCGCTGCACACGGCCTTCTCGGAGGGCACCGGCGGA
ACTCCCCAGAAGGGCAAGACCCTTTCCCACGCGGACGTGATGCGGCTCGC
CACCTGGCCGACGATCGCGGCGATCCTCAAGAGGGAGTACGTCGAAGTTT
AA
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