mRNA_P-littoralis_Contig117.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.66.1
Unique NamemRNA_P-littoralis_Contig117.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:234954..235540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.4476714-UTR-P-littoralis_Contig117:234953..2349731680789486.4476714-UTR-P-littoralis_Contig117:234953..234973Pylaiella littoralis U1_48UTRP-littoralis_Contig117 234954..234973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.4581876-CDS-P-littoralis_Contig117:234973..2350361680789486.4581876-CDS-P-littoralis_Contig117:234973..235036Pylaiella littoralis U1_48CDSP-littoralis_Contig117 234974..235036 +
1680789486.469073-CDS-P-littoralis_Contig117:235459..2355401680789486.469073-CDS-P-littoralis_Contig117:235459..235540Pylaiella littoralis U1_48CDSP-littoralis_Contig117 235460..235540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.66.1prot_P-littoralis_Contig117.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 234974..235540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.66.1

>prot_P-littoralis_Contig117.66.1 ID=prot_P-littoralis_Contig117.66.1|Name=mRNA_P-littoralis_Contig117.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
MYREAVPVDLTAKQLSQILSAKAVKKKYGVEVDKKGRVQEYSILSCTW
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mRNA from alignment at P-littoralis_Contig117:234954..235540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.66.1 ID=mRNA_P-littoralis_Contig117.66.1|Name=mRNA_P-littoralis_Contig117.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=587bp|location=Sequence derived from alignment at P-littoralis_Contig117:234954..235540+ (Pylaiella littoralis U1_48)
AGTGGTTCGCCGCCTCGTCCATGTACCGCGAAGCGGTTCCGGTGGACTTG
ACGGCTAAGCAGCTGAGCCAGATACTTTCTGCGGTGGGTGAACACACCGG
TGCGAATTAGAGGCTTATTGTTTATACGCTGTGCACCGTAGGTATTGTCT
CGACATATTTGTATCTCAGGTCTTCGCGCCTTTTGGGATCGACCTCGGTG
TACTCGCGGGTAGGACCCATAGATGCCTTGGAGGAACCCGCAGGATATAA
CAATTGGTTTCACCTTTCTATTATCATACTTAGATCCCGTGATATTTGTT
GTGGGAAATCCTAGTATACACGCTTAAAGTGGGCTCCCGACACTTTGCGT
TTCAGTGTATCGGCGTTATGTACATCCTAGTCCTCGGTTGTGTTGTAGCG
TGTATAGTATGAGGTAGTTATGGCATCCATTCCTCCCAGGTCTGACATAC
ATACATACCTCGCGTGCGCTCCGATATATCATATATATATATGGCCCGGC
ACACAGAAAGCCGTAAAGAAAAAGTACGGGGTCGAGGTAGACAAGAAGGG
AAGGGTCCAGGAGTACTCCATTCTTTCCTGTACATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:234954..235540+

>mRNA_P-littoralis_Contig117.66.1 ID=mRNA_P-littoralis_Contig117.66.1|Name=mRNA_P-littoralis_Contig117.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig117:234954..235540+ (Pylaiella littoralis U1_48)
ATGTACCGCGAAGCGGTTCCGGTGGACTTGACGGCTAAGCAGCTGAGCCA
GATACTTTCTGCGAAAGCCGTAAAGAAAAAGTACGGGGTCGAGGTAGACA
AGAAGGGAAGGGTCCAGGAGTACTCCATTCTTTCCTGTACATGG
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