mRNA_P-littoralis_Contig66.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.2.1
Unique NamemRNA_P-littoralis_Contig66.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.2.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 7.500e-5
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 3 
Query:   81 FMTGNLVRSSSHMALECVSTRTGFKVAVGDTVMAYVTADRADLVPCRIAEV 233
            +M G LVRS SHM L+CV+   G +V VGDT+MA V  D     PCR+A +
Sbjct:  201 YMNGKLVRSFSHMGLQCVTAGDGVQVMVGDTIMARVP-DCGTPQPCRLAAI 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LGI1_9PHAE7.500e-550.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:6867..7198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categorymitochondrion
Exons1
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791374.0386257-UTR-P-littoralis_Contig66:6866..69101680791374.0386257-UTR-P-littoralis_Contig66:6866..6910Pylaiella littoralis U1_48UTRP-littoralis_Contig66 6867..6910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791374.051711-CDS-P-littoralis_Contig66:6910..71981680791374.051711-CDS-P-littoralis_Contig66:6910..7198Pylaiella littoralis U1_48CDSP-littoralis_Contig66 6911..7198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.2.1prot_P-littoralis_Contig66.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 6911..7198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.2.1

>prot_P-littoralis_Contig66.2.1 ID=prot_P-littoralis_Contig66.2.1|Name=mRNA_P-littoralis_Contig66.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MRRTFLTFHSGCFMTGNLVRSSSHMALECVSTRTGFKVAVGDTVMAYVTA
DRADLVPCRIAEVYWQKAREKEARRPLKLAGGRGAFWQRLRPSVVE
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mRNA from alignment at P-littoralis_Contig66:6867..7198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.2.1 ID=mRNA_P-littoralis_Contig66.2.1|Name=mRNA_P-littoralis_Contig66.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=332bp|location=Sequence derived from alignment at P-littoralis_Contig66:6867..7198+ (Pylaiella littoralis U1_48)
GCTTCTGAAGGTGTTCGAGCGTCCAATCAAGGACAAATGAGGAAATGAGA
CGTACGTTCTTGACATTCCATTCGGGGTGCTTCATGACTGGCAACCTGGT
CAGGTCGTCTTCGCACATGGCTCTTGAATGCGTTTCTACCCGGACAGGGT
TCAAGGTCGCAGTTGGAGACACGGTCATGGCATACGTTACGGCAGACCGA
GCCGACCTGGTCCCCTGCCGCATAGCAGAAGTTTACTGGCAGAAGGCACG
GGAAAAAGAAGCGCGTCGTCCCTTGAAGCTTGCGGGGGGTCGGGGGGCGT
TTTGGCAACGGCTCCGCCCGAGTGTAGTGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:6867..7198+

>mRNA_P-littoralis_Contig66.2.1 ID=mRNA_P-littoralis_Contig66.2.1|Name=mRNA_P-littoralis_Contig66.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig66:6867..7198+ (Pylaiella littoralis U1_48)
ATGAGACGTACGTTCTTGACATTCCATTCGGGGTGCTTCATGACTGGCAA
CCTGGTCAGGTCGTCTTCGCACATGGCTCTTGAATGCGTTTCTACCCGGA
CAGGGTTCAAGGTCGCAGTTGGAGACACGGTCATGGCATACGTTACGGCA
GACCGAGCCGACCTGGTCCCCTGCCGCATAGCAGAAGTTTACTGGCAGAA
GGCACGGGAAAAAGAAGCGCGTCGTCCCTTGAAGCTTGCGGGGGGTCGGG
GGGCGTTTTGGCAACGGCTCCGCCCGAGTGTAGTGGAA
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