mRNA_P-littoralis_Contig117.42.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.42.3
Unique NamemRNA_P-littoralis_Contig117.42.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.42.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:131379..137045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1817
Hectar predicted targeting categoryother localisation
Exons2
Cds size1254
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.3738844-UTR-P-littoralis_Contig117:131378..1318301680789486.3738844-UTR-P-littoralis_Contig117:131378..131830Pylaiella littoralis U1_48UTRP-littoralis_Contig117 131379..131830 -
1680789486.4143484-UTR-P-littoralis_Contig117:136934..1370451680789486.4143484-UTR-P-littoralis_Contig117:136934..137045Pylaiella littoralis U1_48UTRP-littoralis_Contig117 136935..137045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.3875432-CDS-P-littoralis_Contig117:131830..1326071680789486.3875432-CDS-P-littoralis_Contig117:131830..132607Pylaiella littoralis U1_48CDSP-littoralis_Contig117 131831..132607 -
1680789486.405669-CDS-P-littoralis_Contig117:136457..1369341680789486.405669-CDS-P-littoralis_Contig117:136457..136934Pylaiella littoralis U1_48CDSP-littoralis_Contig117 136458..136934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.42.3prot_P-littoralis_Contig117.42.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 131831..136934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.42.3

>prot_P-littoralis_Contig117.42.3 ID=prot_P-littoralis_Contig117.42.3|Name=mRNA_P-littoralis_Contig117.42.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=418bp
MAIKQIKRVPLPQDYTLSPMASEEGTKESKSTIASQARAETNQEQMACQP
HQDGTTTAEALPISPADSAARGGYGTPATNSVDMPNKGHPQPASDARSSS
YPAALEENATGESAYGDNASQEEGGADGNDEGNESDEWSDVEGDEVHQLP
KAVKAQFGNAAAAAASTVAAAAAAAAAAAADVAAALGIVQGARVVAAATV
EAAALVVAAVARVAVVATAEAAAAAAAADVAAADVAATITVVRADVLVAN
NSLHEKQRPTEDHSSNPGTIDTAGLVRGASSWNLLFGRAVSGLCCRGCCN
AVYTSPVAASTTTPHGTQGPASRSSLTDWSAATMRLPCLETTVEVQTPHH
QHPAQRARRIAPPVPNSHYASAAGGLDVRHAPPARLDPHAVRLRLLLPRS
PQHAWWPVIRRLEALNI*
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mRNA from alignment at P-littoralis_Contig117:131379..137045-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.42.3 ID=mRNA_P-littoralis_Contig117.42.3|Name=mRNA_P-littoralis_Contig117.42.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5667bp|location=Sequence derived from alignment at P-littoralis_Contig117:131379..137045- (Pylaiella littoralis U1_48)
GGCACTGCCCCACAACCGGAGTACAATTTGGTGTGCCTCGTCAAGTAGAC
AGCAGTGTAGACCAAATGTACACCGGTACTAAACGCCAACCACCACGCTA
CTTCAGCTACTATGGCAATCAAGCAAATCAAACGTGTCCCCTTACCTCAG
GACTACACCCTTTCGCCCATGGCGTCTGAGGAGGGGACAAAGGAAAGCAA
GAGCACGATCGCCTCCCAGGCCCGTGCTGAAACAAACCAAGAACAGATGG
CCTGCCAACCACACCAGGACGGAACAACGACAGCAGAGGCACTGCCAATA
TCGCCAGCTGATTCAGCTGCCAGGGGCGGTTATGGTACCCCCGCAACGAA
CTCGGTTGATATGCCAAACAAGGGACATCCACAGCCAGCCAGCGATGCTC
GCAGCAGCAGCTACCCCGCCGCTCTTGAGGAAAATGCCACTGGAGAGAGT
GCCTACGGGGACAACGCATCACAGGAGGAGGGAGGTGCTGATGGCAATGA
TGAAGGCAACGAGTCGGACGAGTGGTCAGATGTGGAGGGCGACGAAGTTC
ATCAACTCCCCAAGGCGGTCAAGGCGCAGTTCGGAAATGTGAGCCTACAT
CGTGGGTCACAACACAAAACAGAGTAGGTTCTGAAAAGTAGGAAGACAAA
AGTAATACTTCCTGACACTTTGATAATTGCCTCAAAAACAAAAAACGCAA
ACCCAATTCGTTCAACGTGGACAGCATCTATGATACGTGTTGTGTCAACC
TTTCCCTGTTGGAGGTTACAAATATACGAAGAACTTCGTAAAGAAATGCG
TGCCCACCGTGATTACGCTGGCACAGCACTCTCGTGAGCGAGGGTAAATA
TGTAAAAGGTGACTCCGATTCATTTCTGTACTTGACAGGAATTTTCACGT
ATGATACCTACCTGTCAAGTGAGGGTTCGTAGAAAAAAAAAGAACTGGAA
CCTAGATTCGTCCCTCCCTTCCATCCTACCATGCGTTGTGTCTTGGAAAA
AACAAAAAATATCCCGAAACGTGTCATATGGTAGAACGTGGAACGGAGCG
CGAGCTAAAAGCCGGGCGCTGCTGTGGTTCTTCGCTGATGTATTTATGTA
CAGCAGTACGTTTAGAAGTTTCAATACCACACACACGTACACGAACATCC
GTCCATCTCCCATCTCTCGCCCACAGCAGACACACACAGTCCACACAGCA
CAGCACATCATGGTTTGAGAGATGGTCATTTCTCGGTCGGTGGCAGTCGT
CCGGGCCCGTTTGAAGAAAAGCGCGTGAACAAACAGACGGAGAGGTGTGA
CATGGTGCTTTGATCATTCGTTTTCTGCTGCTCTTCTTGCTGCTGCGCTG
CGCGATGAGTTTGTTCATCAGAGAGAGGGCTTACGGTGTTCGGCGCGTGG
CGCTAGTCGGGGTGGGGGAGCTGCTGTGTCTCTGTGGTGTGCGTATGTGT
TGTTATCCCATATTCTCTGGCATACTAGTCTGCACCTTGCGGTTCAAACT
ACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGA
GGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCG
CGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTAATAGCATA
GCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCG
TTCCTCTGCATCTAGTGGTCAACGAGGGGACCACTAGTCCACCGGGGCGA
CCGGTATGTATGTGTGTGTGGTACAGATTTGTGGTCAGAGAGGGAAAAAG
CTGCCAGAAACGTCTTGCCTCCCAGCAGCCCGTTCCACATGAACTTTTGG
ACAATTTTAAGGAACGAGACTCTGAAAATAATATTTTTGGAGGAGGCAAC
GAAAAATGAGAAACCACGGTGGCCGGGGAATTCTTTCCAAGAATGCTTTT
TCCTGAGGTTGGCCAATCAGAAAATTATTATAGGTTTTACGTTTCACGTT
CCACACCTCGGTTTTGTTCGACGAACCGCGGAGGAGCGTACAGGACACGA
TCCGCGTGCTCCCTCCCCGTTCCTCCCGTACCGTGTGCCACCGCATATCA
CACAACCCCCCCAAATCCCCGTGAATCATAATAGCCACAAGCACCTGTAG
TCAAGAAATACCAGGAAATAAAACCTCACGCCATAACCCATTTTAATTCC
TTCAAATCAAACATAAACCTCCCGAATGTCCCGATCTCTCACGAAGTATC
AACAACGAGCGTTCAAGCTGAAATACAACCAGCCCCTCCAAAGAAGGTTG
AGGTCAAACCTCTAAATTTCTTGCGCCAAATTCTCAATCCGCCAAAAAAC
AAAAAGATTCTCGAAAAAATACCCCAAAAGAACGACGTCGATTACAGAAG
TGGTGCTGCTGCTGTAGTGTGGATTTCTACTCCGGAAAATGCGCCAAATA
CCGAGACAAAATCTTCAAATAGTATAATTTCAACTTTATTCAACAACCCT
ATTACTGTAAGACTTCGGAGGCACTGAAGGCTCAACAAGGACTCACCAAA
ACACTCCAAAAGTAGTACGAAGTATCATCCAATACACCAGAAAAAGCAAA
AACCCTTGTTGTAAACAGGAAAACAGGAAAGAGCTTCGCCAGTACTACTG
TGATTAAATACCAAACACTCTCAACAAAAACCGACAGCCCCCTGCTGCAA
TGTTACTCTCGAATTTACAATAAAAGACCATGAAGTCCACTCTGCGCTGT
GACGGCAGGTGAAGCAAACGCCAGACTCGTTGATCAACATCGAAAATATT
GAATCGACCAAACGAACTAAAATGAGACCCCCCCTCTCAGTGATGGCATG
GGAATCAAATGCCAGGAGTTGCATTATCATGAAAACAGTTCAAGTCGCCA
ACATCTGCTGATATTGCAAACAGAATCACGATACCTTATTCCCACCCTTA
TTCCTCGAAGCAGGAAGCAGCAGCATTCGATATCAGTGCCAAGTAACAAC
GATCAAGATTTAAAGCATATCGAAGATCAAACCAAGCAAAAACTACACAA
AAAACGAGGTATAATACAAAACGCACATGTTCAAGCTCATCAAACAAACC
CAGAGATGAAATGAGATTTGCCGCTTCAAGATTTATCTTCAAAGTCTCAA
TCCAATCAAAACTGAAAGCGACATATCAAACTTCAAAAGGAACACACAAA
GAAAAACGAAACAAAACATTAACGAAACCAAGCAGAAACCTAAACCCCAG
AGCACCCGAAAATGGCGGTTGCCTTTCGCACGGAGAATGAAATATTGCCG
TCCACCACGTTTGAAAAATTGTCACAAACAATCGCAAATGGCTCCGACGT
TATCAACGCAATTTCATTTTTGAAAGCCCTTCCAACGGACGATTCATGAG
AAATAGAAAACGCTTATTGGAAAGGAACGGACGTGCATCAACGTCAGCAT
CACAATTTCAACACCATGCACATTGTTTCCGAGTAGAGTCACGCCAACTC
CCCGTGATTCTACATACAGAAGTGCAATACTCATTTATCGATCATGAATT
CCATGACGAATGCCAAATGACTCGCCCCCACCGCAACGTAGTTGTCAGTC
ATGCCATGCAGGAAAGTAAAAGTAAGAAAAACGAAAATGGAGATCGCATT
TATTCACATCTCAGTTCCATTTTCACACGCTTGCTGTTTTCATGATCACA
CTCGTCGAACGTTCCAAACAACAAAGCCGTATAACCGTTGTGTTGCGCAA
TTGCTTCTACTTGCACAGCAGATTGCTGTAGTGACCAGAGGATAAGTTCG
TATCTGTACGTATCTCATCACTATTCCAAGCGCCTGATTGTCAGATGGGA
TGGTCTTTCCTTTCTCTCAAAACGCAAACAAGAATACAAACTGCGATCAT
TAACGGCACATTCCAATTTTCGGTGCTTTAACACACTAGCGGTTCCAACA
CTATTTTTGGGCACAAGAACGAATCGAAAGAAAAGAAAGATCTCAACGCA
TGTCCCTGTTTTTTCGACCCCTCTCAACAAAACGGCAGAACGATACAAAA
CAGAACACAAACCCAAGCTCAGATTTTCAAATAGCATGCTCTCTTCTGTC
ATTACGTGCCTGGTCGGGTGTGAACGAAACCTCTTCTCGTTGGTCGAGGA
CGTGTCTCGCCAGCACTCCTATCGTTGGTGGTGTCGCTGCTGCCACTGCT
GCTGCTGCTATTGCTGCTGCTGCTGCACCCACGGTCACTCTAAACACTGC
CCCCCAGCACAAAGCCCGTCACTCTTCGTGCTGCAATTGCCGAAGCCCTT
GCCCCGGTCAAACGACCGTGTGACCCCGAAATTGTCCTCCCCGCGTCCAG
CGCTTCGTACAGACCGTTTTACCCCGTCGAACGAGAATGCCGACATCCCT
GTCTCCGTCTCGTCTGCCCCCTCGTTTCCCTGCTGCAGGCTGCTGCCGCC
GCCGCCTCCACCGTTGCCGCAGCTGCTGCTGCTGCTGCTGCCGCCGCCGC
CGACGTTGCTGCTGCTCTCGGCATCGTCCAAGGTGCCCGTGTCGTGGCAG
CTGCTACCGTTGAAGCTGCTGCTCTCGTCGTCGCCGCCGTCGCCCGTGTC
GCTGTAGTTGCTACCGCTGAAGCTGCTGCTGCTGCTGCTGCCGCCGACGT
TGCTGCCGCTGACGTTGCTGCTACCATTACTGTTGTCCGTGCTGATGTTC
TCGTCGCAAACAACAGTCTTCACGAAAAACAGAGGCCAACTGAAGACCAC
TCCTCCAACCCAGGCACAATTGATACAGCTGGCCTCGTCAGAGGTGCTTC
TTCCTGGAACCTGCTGTTTGGTCGTGCTGTCTCCGGTCTCTGTTGTCGCG
GCTGCTGTAATGCGGTGTATACGTCCCCGGTTGCGGCTTCCACGACCACT
CCACACGGAACCCAGGGCCCGGCGTCCAGGTCCAGCTTGACTGATTGGTC
GGCTGCGACGATGCGACTGCCATGTCTGGAGACGACGGTCGAGGTTCAGA
CCCCGCATCACCAACATCCGGCTCAGCGAGCTCGGCGGATAGCGCCGCCG
GTGCCAAATTCACATTATGCCTCTGCCGCAGGAGGCCTCGATGTGCGACA
TGCTCCGCCCGCGCGGCTCGATCCGCATGCCGTGCGGCTGCGACTTCTGC
TGCCGAGATCACCACAGCACGCATGGTGGCCCGTAATAAGAAGGCTGGAG
GCCTTGAACATCTGATGCTCTCTGGTGCCGTCAATCAAATTGTGATCGCA
AAACACCACCAGCGCGGGTTGGGAGCGCCTCACCAGCGCACACCCTCTTC
TCGCTACCTTCGTTTAGCGTCACACGAGCTTTTGACAACCGCGTAGCGGT
AATGACACCGAGAGTCACGATCATGTAGACAATATGTTCGAGAGAATCAG
GACTTGGGAGATTTGCAACCTCGGTCGCTGTCTGCTGAAACGCGGACAAC
ATTGTGTTGTGTACTTGATTCGATTTTACAGCGAAAACAGCGAAAAGCAC
CCACCGCATCTTGGACTAACACGGAGGTATTTCATGTTCTGAGTTCCATG
GAACCAATAGTTGTAGACAAAACACAAGAATTTTGCCCGATGACCAAGAG
GACCCTCGCTCACCGAACAACGCGTGATTGGGAGCAAGCCTTCGGAAAAT
TCACACCAAGTACTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:131379..137045-

>mRNA_P-littoralis_Contig117.42.3 ID=mRNA_P-littoralis_Contig117.42.3|Name=mRNA_P-littoralis_Contig117.42.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1254bp|location=Sequence derived from alignment at P-littoralis_Contig117:131379..137045- (Pylaiella littoralis U1_48)
ATGGCAATCAAGCAAATCAAACGTGTCCCCTTACCTCAGGACTACACCCT
TTCGCCCATGGCGTCTGAGGAGGGGACAAAGGAAAGCAAGAGCACGATCG
CCTCCCAGGCCCGTGCTGAAACAAACCAAGAACAGATGGCCTGCCAACCA
CACCAGGACGGAACAACGACAGCAGAGGCACTGCCAATATCGCCAGCTGA
TTCAGCTGCCAGGGGCGGTTATGGTACCCCCGCAACGAACTCGGTTGATA
TGCCAAACAAGGGACATCCACAGCCAGCCAGCGATGCTCGCAGCAGCAGC
TACCCCGCCGCTCTTGAGGAAAATGCCACTGGAGAGAGTGCCTACGGGGA
CAACGCATCACAGGAGGAGGGAGGTGCTGATGGCAATGATGAAGGCAACG
AGTCGGACGAGTGGTCAGATGTGGAGGGCGACGAAGTTCATCAACTCCCC
AAGGCGGTCAAGGCGCAGTTCGGAAATGCTGCTGCCGCCGCCGCCTCCAC
CGTTGCCGCAGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGACGTTGCTG
CTGCTCTCGGCATCGTCCAAGGTGCCCGTGTCGTGGCAGCTGCTACCGTT
GAAGCTGCTGCTCTCGTCGTCGCCGCCGTCGCCCGTGTCGCTGTAGTTGC
TACCGCTGAAGCTGCTGCTGCTGCTGCTGCCGCCGACGTTGCTGCCGCTG
ACGTTGCTGCTACCATTACTGTTGTCCGTGCTGATGTTCTCGTCGCAAAC
AACAGTCTTCACGAAAAACAGAGGCCAACTGAAGACCACTCCTCCAACCC
AGGCACAATTGATACAGCTGGCCTCGTCAGAGGTGCTTCTTCCTGGAACC
TGCTGTTTGGTCGTGCTGTCTCCGGTCTCTGTTGTCGCGGCTGCTGTAAT
GCGGTGTATACGTCCCCGGTTGCGGCTTCCACGACCACTCCACACGGAAC
CCAGGGCCCGGCGTCCAGGTCCAGCTTGACTGATTGGTCGGCTGCGACGA
TGCGACTGCCATGTCTGGAGACGACGGTCGAGGTTCAGACCCCGCATCAC
CAACATCCGGCTCAGCGAGCTCGGCGGATAGCGCCGCCGGTGCCAAATTC
ACATTATGCCTCTGCCGCAGGAGGCCTCGATGTGCGACATGCTCCGCCCG
CGCGGCTCGATCCGCATGCCGTGCGGCTGCGACTTCTGCTGCCGAGATCA
CCACAGCACGCATGGTGGCCCGTAATAAGAAGGCTGGAGGCCTTGAACAT
CTGA
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