mRNA_P-littoralis_Contig66.218.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.218.1
Unique NamemRNA_P-littoralis_Contig66.218.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig66.218.1 vs. uniprot
Match: D7FN50_ECTSI (Death domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN50_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 4.280e-44
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    7 ILPSYSCIGERAAAIRGVERCLSEFCTVWSTTRLLDSHASEKTKRDFIFHLRPLLKHSPARERHEAVLVLCRRLFTPRNDVTESKSKHYVFAAAFEPEAGGYPLAGAFEE 336
            ILPSY C  ERAAAIRGVERCLSEFC VWST RLLDSHA   TK DF+FHL+PLL+H+ AR+RHEAVLVLCR +FTP+NDV ESK +H+VFAA F+P++GG  LA AF E
Sbjct:   62 ILPSYDCTRERAAAIRGVERCLSEFCIVWSTARLLDSHAESATKSDFVFHLKPLLEHTAARDRHEAVLVLCRGIFTPQNDVVESKWEHHVFAAVFQPKSGGSSLASAFAE 171
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BLAST of mRNA_P-littoralis_Contig66.218.1 vs. uniprot
Match: A0A6H5LCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCB0_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.690e-29
Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 QGILPSYSCIGERAAAIRGVERCLSEFCTVWSTTRLLDSHASEKTKRDFIFHLRPLLKHSPARERHEAVLVLCRRLFTPRNDVTESKSKHYVFAAAFEPEAGGYPLAGAFEE 336
            QG +P +    E+   IRGVERCL+EF  VWST RLL++ A  KTKRDF+FHLRPLL+H+PAR+RHE+VLVLCR LFTP ++   S+    V   A   E GG PL  AF E
Sbjct:  126 QGFVPKFESSYEKLVVIRGVERCLAEFTLVWSTARLLETCAPPKTKRDFLFHLRPLLEHAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSE 237
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BLAST of mRNA_P-littoralis_Contig66.218.1 vs. uniprot
Match: D7FXL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.600e-28
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:    1 QGILPSYSCIGERAAAIRGVERCLSEFCTVWSTTRLLDSHASEKTKRDFIFHLRPLLKHSPARERHEAVLVLCRRLFTPRNDVTESKSKHYVFAAAFEPEAGGYPLAGAFEE 336
            QG++P +    E+   IRGVERCL+EF  VWST RLL++ A  +TKRDF+FHLRPLL+++PAR+RHE+VLVLCR LFTP ++   S+    V   A   E GG PL  AF E
Sbjct:  105 QGLVPKFESSYEKLVVIRGVERCLAEFSLVWSTARLLETCAPPETKRDFLFHLRPLLEYAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSE 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN50_ECTSI4.280e-4472.73Death domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5LCB0_9PHAE6.690e-2956.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXL8_ECTSI7.600e-2854.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:675885..677153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FN50
Model size934
Max annot lvl2880.D7FN50|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.98e-46
EggNOG OGs2ES5T@1|root,2SUTI@2759|Eukaryota
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.6849637-CDS-P-littoralis_Contig66:675884..6760851680791373.6849637-CDS-P-littoralis_Contig66:675884..676085Pylaiella littoralis U1_48CDSP-littoralis_Contig66 675885..676085 +
1680791373.7034373-CDS-P-littoralis_Contig66:676422..6769021680791373.7034373-CDS-P-littoralis_Contig66:676422..676902Pylaiella littoralis U1_48CDSP-littoralis_Contig66 676423..676902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.7180107-UTR-P-littoralis_Contig66:676902..6771531680791373.7180107-UTR-P-littoralis_Contig66:676902..677153Pylaiella littoralis U1_48UTRP-littoralis_Contig66 676903..677153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.218.1prot_P-littoralis_Contig66.218.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 675885..676902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.218.1

>prot_P-littoralis_Contig66.218.1 ID=prot_P-littoralis_Contig66.218.1|Name=mRNA_P-littoralis_Contig66.218.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
QGILPSYSCIGERAAAIRGVERCLSEFCTVWSTTRLLDSHASEKTKRDFI
FHLRPLLKHSPARERHEAVLVLCRRLFTPRNDVTESKSKHYVFAAAFEPE
AGGYPLAGAFEEASVFPSIFRVCIPLPCLFAAYLSFLPSSLCFPLEGENA
HQLPGMSSDWRSRSSIVSDGFELLLNYCWCAGSRLWFTAVPDVVWCLILP
SRTSQPFLPSATMRNPIRKSCRDPNL*
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mRNA from alignment at P-littoralis_Contig66:675885..677153+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.218.1 ID=mRNA_P-littoralis_Contig66.218.1|Name=mRNA_P-littoralis_Contig66.218.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-littoralis_Contig66:675885..677153+ (Pylaiella littoralis U1_48)
CAGGGCATTCTCCCATCCTACAGCTGCATCGGGGAGAGGGCGGCGGCCAT
CCGAGGTGTGGAGCGCTGCCTGAGCGAGTTCTGCACGGTCTGGTCCACGA
CCAGGCTGCTAGACTCGCACGCCAGCGAGAAGACGAAGCGCGACTTCATC
TTCCACCTCAGGCCTCTTCTCAAGCACTCCCCAGCCCGCGAACGCCATGA
GGTGGGTTTGTACCATGTACCCAAGGCGTGCATGTGTGTTTGTGGGGGGG
GAGGGGTATTGCTTGCCTTTGACGTCCGACGTCCATTTGGCACGGAGAGT
GATGCGACGAGCAGGGCGGTACTAGAGGATATCGTGTTTCTTATCGGTGG
GAGGGGTGCTACGTGTAGCGACCGAGGAGAGGACTCGACGTCGTGCGCAC
TGCGGGTCTTCTCTGATTTTGACGTACCTCTGTGTGAGTGGTTTGGTACG
GCGGTGACGCGACGCTGACTTTCTGTTTGGTGCTGCAACCCCCGCTTGTT
GTTTGTTGTCTGGGCTGGCGATTGGTTGGTTGGCCCAGGCTGTGCTGGTG
CTGTGCAGAAGGCTGTTTACCCCGCGAAACGACGTCACGGAGTCCAAGTC
GAAGCACTACGTGTTCGCGGCGGCGTTTGAGCCGGAGGCGGGCGGTTATC
CGCTTGCTGGCGCTTTCGAGGAGGCGAGTGTTTTCCCTTCTATTTTTCGC
GTCTGCATACCTTTGCCCTGCCTGTTCGCTGCGTATCTCTCTTTCCTTCC
GTCTTCTCTCTGTTTCCCTCTAGAGGGAGAGAATGCTCACCAGCTGCCGG
GCATGTCCTCCGATTGGCGAAGCCGTTCCAGCATTGTGAGTGATGGTTTC
GAGCTACTGCTAAACTACTGCTGGTGTGCCGGAAGTCGGTTGTGGTTCAC
TGCTGTTCCTGATGTTGTGTGGTGTCTTATTCTTCCATCACGAACAAGCC
AACCATTTTTGCCCTCGGCCACGATGAGAAATCCCATTCGCAAATCTTGC
AGAGACCCAAACTTATAACCGTTGTGGCCGTCGTCTGAAATATGTCGTGC
TTTTTTATCTGCAGCACGCATCGTTTTATGGAGTCGTCCGGGCAGTAAAG
CACATAGCTGATCAACTACACATCGCCTTCCCTTTCCCCCCATCGAGTGC
CTGCCTCTCCCTTTCGCAAATGTCAAACACCGTAGCCACGCAGGGAGATT
TCCAAGACGAGGTGGAGCGTATCCCCAGGGTGCTGCCTCGCCTCACCAGG
GATCAAGCGACGATGATCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:675885..677153+

>mRNA_P-littoralis_Contig66.218.1 ID=mRNA_P-littoralis_Contig66.218.1|Name=mRNA_P-littoralis_Contig66.218.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig66:675885..677153+ (Pylaiella littoralis U1_48)
CAGGGCATTCTCCCATCCTACAGCTGCATCGGGGAGAGGGCGGCGGCCAT
CCGAGGTGTGGAGCGCTGCCTGAGCGAGTTCTGCACGGTCTGGTCCACGA
CCAGGCTGCTAGACTCGCACGCCAGCGAGAAGACGAAGCGCGACTTCATC
TTCCACCTCAGGCCTCTTCTCAAGCACTCCCCAGCCCGCGAACGCCATGA
GGCTGTGCTGGTGCTGTGCAGAAGGCTGTTTACCCCGCGAAACGACGTCA
CGGAGTCCAAGTCGAAGCACTACGTGTTCGCGGCGGCGTTTGAGCCGGAG
GCGGGCGGTTATCCGCTTGCTGGCGCTTTCGAGGAGGCGAGTGTTTTCCC
TTCTATTTTTCGCGTCTGCATACCTTTGCCCTGCCTGTTCGCTGCGTATC
TCTCTTTCCTTCCGTCTTCTCTCTGTTTCCCTCTAGAGGGAGAGAATGCT
CACCAGCTGCCGGGCATGTCCTCCGATTGGCGAAGCCGTTCCAGCATTGT
GAGTGATGGTTTCGAGCTACTGCTAAACTACTGCTGGTGTGCCGGAAGTC
GGTTGTGGTTCACTGCTGTTCCTGATGTTGTGTGGTGTCTTATTCTTCCA
TCACGAACAAGCCAACCATTTTTGCCCTCGGCCACGATGAGAAATCCCAT
TCGCAAATCTTGCAGAGACCCAAACTTATAA
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