mRNA_P-littoralis_Contig66.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig66.39.1
Unique NamemRNA_P-littoralis_Contig66.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig66.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig66contigP-littoralis_Contig66:96644..97421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size355
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.2352314-CDS-P-littoralis_Contig66:96643..967311680791373.2352314-CDS-P-littoralis_Contig66:96643..96731Pylaiella littoralis U1_48CDSP-littoralis_Contig66 96644..96731 +
1680791373.2466526-CDS-P-littoralis_Contig66:96968..971381680791373.2466526-CDS-P-littoralis_Contig66:96968..97138Pylaiella littoralis U1_48CDSP-littoralis_Contig66 96969..97138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791373.2603853-UTR-P-littoralis_Contig66:97138..971571680791373.2603853-UTR-P-littoralis_Contig66:97138..97157Pylaiella littoralis U1_48UTRP-littoralis_Contig66 97139..97157 +
1680791373.2702513-UTR-P-littoralis_Contig66:97343..974211680791373.2702513-UTR-P-littoralis_Contig66:97343..97421Pylaiella littoralis U1_48UTRP-littoralis_Contig66 97344..97421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig66.39.1prot_P-littoralis_Contig66.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig66 96644..97138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig66.39.1

>prot_P-littoralis_Contig66.39.1 ID=prot_P-littoralis_Contig66.39.1|Name=mRNA_P-littoralis_Contig66.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MASHLGVCRNSGIRHDALLDWTHIRPPSEAQELLLSGRGWYAEESEGVFH
LVMRVGRYVHRPLQVVALTMVRDGATGYLDGLLKR*
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mRNA from alignment at P-littoralis_Contig66:96644..97421+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig66.39.1 ID=mRNA_P-littoralis_Contig66.39.1|Name=mRNA_P-littoralis_Contig66.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=778bp|location=Sequence derived from alignment at P-littoralis_Contig66:96644..97421+ (Pylaiella littoralis U1_48)
ATGGCTAGCCACCTCGGAGTATGCCGGAATAGTGGGATTCGACACGACGC
CCTACTCGATTGGACACATATTCGTCCGCCTTCTGAAGGTACGGGATAAT
TGTGTCGTTGACGTTTGGCCCGAGTGGGTCTACGTGCATCTGATTTTTTA
TTTGGAAAGACAGCTGTGATCACAAGTGTATCGCACCCTAAACCGAAGCT
TCGCGACTGTTGGATCGATATTTGAGTACGAGAGCTTTCCATTTGATGTC
TTATGTTTCTACCTGCGCACCTCTCCGCCCGTTCCCCTGTGTTCTCCTCG
GCTACCGTTGTACTTCGCCCGAAAGCACAAGAACTACTTCTGTCTGGACG
TGGCTGGTATGCAGAAGAAAGCGAAGGTGTATTCCATCTAGTCATGCGAG
TGGGGCGATACGTACATCGACCTCTACAAGTCGTTGCCCTCACAATGGTC
CGCGACGGGGCTACCGGATACCTCGATGGTCTTCTCAAGAGATGACCAAG
GAGCAATCGTGAAGGTCAGGGTCGCCTCAATCTTGCGTGTCAGTGGTCGA
CGATTGTGTTTGTCCCCGTCGGCGCCTAATATTGAAGCCGAAGTATGTAG
AGGATAATATACTGTATGCTTGAATCGATTTTCGGGCAGGGGCTCGTATT
GATTATTGTTTTGCGCTTTCCGGTGTTTCCGATGCTGCGGTATGGTCCAG
GTCACCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAATCCAT
AACGTTGAACGGCATCGATGTGATGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig66:96644..97421+

>mRNA_P-littoralis_Contig66.39.1 ID=mRNA_P-littoralis_Contig66.39.1|Name=mRNA_P-littoralis_Contig66.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig66:96644..97421+ (Pylaiella littoralis U1_48)
ATGGCTAGCCACCTCGGAGTATGCCGGAATAGTGGGATTCGACACGACGC
CCTACTCGATTGGACACATATTCGTCCGCCTTCTGAAGCACAAGAACTAC
TTCTGTCTGGACGTGGCTGGTATGCAGAAGAAAGCGAAGGTGTATTCCAT
CTAGTCATGCGAGTGGGGCGATACGTACATCGACCTCTACAAGTCGTTGC
CCTCACAATGGTCCGCGACGGGGCTACCGGATACCTCGATGGTCTTCTCA
AGAGATGA
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