mRNA_P-littoralis_Contig117.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig117.28.1
Unique NamemRNA_P-littoralis_Contig117.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig117.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig117contigP-littoralis_Contig117:76767..79088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size293
Hectar predicted targeting categorysignal peptide
Exons3
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.3123121-UTR-P-littoralis_Contig117:76766..767901680789486.3123121-UTR-P-littoralis_Contig117:76766..76790Pylaiella littoralis U1_48UTRP-littoralis_Contig117 76767..76790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789486.3246439-CDS-P-littoralis_Contig117:76790..768181680789486.3246439-CDS-P-littoralis_Contig117:76790..76818Pylaiella littoralis U1_48CDSP-littoralis_Contig117 76791..76818 +
1680789486.3341236-CDS-P-littoralis_Contig117:76991..771151680789486.3341236-CDS-P-littoralis_Contig117:76991..77115Pylaiella littoralis U1_48CDSP-littoralis_Contig117 76992..77115 +
1680789486.3447585-CDS-P-littoralis_Contig117:78973..790881680789486.3447585-CDS-P-littoralis_Contig117:78973..79088Pylaiella littoralis U1_48CDSP-littoralis_Contig117 78974..79088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig117.28.1prot_P-littoralis_Contig117.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig117 76791..79088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig117.28.1

>prot_P-littoralis_Contig117.28.1 ID=prot_P-littoralis_Contig117.28.1|Name=mRNA_P-littoralis_Contig117.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MWRDGSELTAPAIVISSLGGLVYGTDILTPKDARRVRMLRQALKAQLGRP
RGPRPRGQACIDHGFSSEILHRRVLSPEGGNLNARRTSS
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mRNA from alignment at P-littoralis_Contig117:76767..79088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig117.28.1 ID=mRNA_P-littoralis_Contig117.28.1|Name=mRNA_P-littoralis_Contig117.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2322bp|location=Sequence derived from alignment at P-littoralis_Contig117:76767..79088+ (Pylaiella littoralis U1_48)
CGACGAAGTACCAATGGTCAGGCCATGTGGCGAGACGGCAGCGAGCTTAC
AGGTGTGTTGAGCGTGTGGGGGCTGCCCTTCAGTGATTGGCCGCGGTTGG
TCCATCTTGTTGTCGCGAATTCAAAGAGAGGTGAAAAGAGAGGTACTGCA
GTCCGCCTGTCAACCAATGTCAATGAATGCAGCCGGCTCGGCTGTTGTTC
CCCCCGTTCACCACCGGAACAACAGCGCCAGCTATCGTGATCAGCTCGCT
CGGTGGACTTGTCTATGGAACGGATATTCTGACGCCGAAGGATGCACGTC
GAGTGCGCATGCTTCGCCAGGCGCTCAAGGCCCAGCTGGGCCGTCCAAGG
TAAAACATGCGGCGAGATTTCTGCGCCGAACAGGCAGGTCTGTTGTCGTA
GTATGATAGGTGATCAGAGATCTGTAATCTGTGAAGATACCAAACCCTCC
TGCGGAACGATTTTTGAGGCTCGATTCCTGTACTCCATAACGAAGAGGGT
ATCAACACAAGGCAATAAGTTTTTCAGAAAGTAATCGACGAGATGATTCC
AACGCCACGCTTTTCAGCACCGACATTCTTTCTGATACTGCCCGAAGGTT
GGGTATCATCTAATTGTTACTTTGCTGTGAGGTTTAGGCAGACGGTCTGC
CTTGCAGGAATAATCAGCTATCGTTTTCAGGCCCTCAGCTCTTGTCGTCT
GGCGGATGGACTCCATGCTATATGCAAAAATACTGGTACAGAGTACAGAT
GAAGGCCTCGCATTTTACCGTGAAGCAAGGCCCCTTGAGGTGGTACAACC
CACCCGTCACCGCCGTAGGTAGGCAAACGATTTATCTCGTTATTCTGATG
AAACGAGGAATGCCAAGCGATGGTCGAGTGATGTCAGACAGGGCTAGGTA
AGAGAGAGCAGGCCACCATCGACCATTTTCCCCGACCCCACGAATCCTTT
CACGGTCGCAACAATTCATTTCCGGGTTCTTTGTGTCCAGGTTAATGAGA
TCACAGGACATTACTCGTATTTGTCTGGTAGATGTCCTGATCTGTTCGTT
GTGTATGTGTTCCTGAGTATTTCCTAGAAATATGCGCATCCATGGTTCTC
ATACACCCACTGTGGATCACTGTATCATAGGTGTACCTTGTTCCTAGGTG
TGACCGTCAATATATTTGTGTTGGAAACTGTACGTAAGCGTTGAGAATCT
GTATTATGATCGACTGGGGGCACGATTTGTCAAAATAAAAAATATATACT
TCGAAGTATATCATCCCGATGTCTTGACCACATTGTGCTCGTTGGATGGA
CTCATCTACTTGACTACTCAGTCAACGACTGACTGAGTGGTCGAGTGGAT
AAGCTGATAGAGTGGTCAAATGGACAAGTCCATCTAACGAAAATAATGTT
TTCTTGTGGGATTCAATCCCATTTCATCAGGTGCAGTGATCTCCAAGGGA
TCGCGGTCTTTCCCGTCTTCACCCCCCCCTTCACCAAATGCTCCGCACTG
AATAGGCTTTGCAGTGGTTTGCGGGCCGAACCCTGGCCTGCCATCTATCT
AACAACGCGGGCATGTTTTCCCTTACGCCGAAAGGCGCGACATCTGATGA
CGTAGGATCGAATCCTCAAAGTATATTTTTTGTTTGTCAGATGAACTCAT
CTACGAGACCACCCAGTCAGCTATTGAGAAGTGCGTCTAACAAACAAAAT
ACACGCCAAGGAGGTCGAATCTCATCATTTGTCGCTCCTTTTAATGGGGA
AGGGGGAAAATGTGTGCGTTTGATGGCAGGTGTGGGTCGGGCCCGCAAAC
CACTTCGTGTGAGCTTACTCAGCAGCGTTTGGCGAGGGGGTAACAAAGGC
GGGGAAGACCCGCGAGCCCTGGGAGATCACCACACCTGGTGTGACCGGTC
GAACCCCCAAATCGTATTTTTTGTTCGTTAGAGAGCCGTTGATAGAGGTC
GACTGGGCAAATTCATCTAACGAAGATGTTGTTCGAATGGCAGACCAGTT
CTTGTGGATGGGCCTGTGAATGGGCCTGTACTACAACAGTACCAGGTACG
TCGTGGTCACAAAACGTACTCTGAGATCCTCCAATATTGTTGCTCCCATT
CAGATCGCAATGTATCGTTTCTCAACCACCCATCGACTTCTTCAATTCTC
TGCCGACTCCCCTTTCATTTTCATGCACGTCCTCACTGGTGCCATGTCAT
ACATCAGAGGACCACGCCCACGAGGACAAGCCTGCATAGATCACGGTTTC
TCCAGCGAAATCCTTCACCGCCGCGTGCTCTCTCCAGAAGGCGGAAACCT
CAACGCCCGCAGGACCAGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig117:76767..79088+

>mRNA_P-littoralis_Contig117.28.1 ID=mRNA_P-littoralis_Contig117.28.1|Name=mRNA_P-littoralis_Contig117.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig117:76767..79088+ (Pylaiella littoralis U1_48)
ATGTGGCGAGACGGCAGCGAGCTTACAGCGCCAGCTATCGTGATCAGCTC
GCTCGGTGGACTTGTCTATGGAACGGATATTCTGACGCCGAAGGATGCAC
GTCGAGTGCGCATGCTTCGCCAGGCGCTCAAGGCCCAGCTGGGCCGTCCA
AGAGGACCACGCCCACGAGGACAAGCCTGCATAGATCACGGTTTCTCCAG
CGAAATCCTTCACCGCCGCGTGCTCTCTCCAGAAGGCGGAAACCTCAACG
CCCGCAGGACCAGCAGC
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